Variable chunk size on the go?

Hi, I am new to hdf5. For my patching algorithm, I need to find the max matching subsequence between a portion of the old file and the new file. Then I need to encode the difference vector to a file with Gzip compressor. However, since the length of the difference vector is not fixed, is it suitable to use HDF5 API? I had a quick look at h5-cmprss.c and it seems to require fixed chunking.

HDF5 has fixed sized chunks. (Although we’ve thought about changing that)

  Quincey

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On May 19, 2017, at 9:48 AM, 武鹏程 <wuwuengr@qq.com> wrote:

Hi, I am new to hdf5. For my patching algorithm, I need to find the max matching subsequence between a portion of the old file and the new file. Then I need to encode the difference vector to a file with Gzip compressor. However, since the length of the difference vector is not fixed, is it suitable to use HDF5 API? I had a quick look at h5-cmprss.c and it seems to require fixed chunking.
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