i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-I/home/mafunk/CODE/RSET/externalPackages/src/hdf5-1.8.4-patch1/hdf5/include
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-I/home/mafunk/CODE/RSET/externalPackages/src/hdf5-1.8.4-patch1/hdf5/include
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
so wait though, do i need to point the configure to the hdf4 or hdf5
library?
Currently i am pointing it to the hdf5 library (in fact i haven't even
build the hdf4 library)
thanks
matt
···
On 5/13/2010 2:20 PM, H. Joe Lee wrote:
Hi, Matt!
You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and see if
it works.
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-I/home/mafunk/CODE/RSET/externalPackages/src/hdf5-1.8.4-patch1/hdf5/include
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
so wait though, do i need to point the configure to the hdf4 or hdf5
library?
Currently i am pointing it to the hdf5 library (in fact i haven't even
build the hdf4 library)
thanks
matt
On 5/13/2010 2:20 PM, H. Joe Lee wrote:
Hi, Matt!
You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and see
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:12 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] trying to build h4toh5 tools
Hi,
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
so wait though, do i need to point the configure to the hdf4 or hdf5
library?
Currently i am pointing it to the hdf5 library (in fact i haven't even
build the hdf4 library)
thanks
matt
On 5/13/2010 2:20 PM, H. Joe Lee wrote:
Hi, Matt!
You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and see
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:12 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] trying to build h4toh5 tools
Hi,
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:35 PM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] trying to build h4toh5 tools
Thanks for the reply.
so wait though, do i need to point the configure to the hdf4 or hdf5
library?
Currently i am pointing it to the hdf5 library (in fact i haven't even
build the hdf4 library)
thanks
matt
On 5/13/2010 2:20 PM, H. Joe Lee wrote:
Hi, Matt!
You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and see
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:12 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] trying to build h4toh5 tools
Hi,
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
well, the configure command below is exactly what i am using (i also
tried passing CPPFLAGS=-DH5_USE_16_AP since i link against
hdf5-1.8.4-patch1, but it makes no difference).
However, the configure always fails with this:
checking how make searches directories... VPATH=DIR1 DIR2 ...
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5open in -lhdf5... no
configure: error: cannot find HDF5 library.
I guess i build the hdf5 library somehow wrong? What do i need to pass
to it for linker to find H5open?
thanks
matt
···
On 5/13/2010 5:53 PM, H. Joe Lee wrote:
Hi, Matt!
Building HDF-EOS2 is an option, not a requirement. However, having HDF4
library is a must.
Here's the simplest way to configure and build h4toh5 tool if you want to
skip building HDF-EOS2.
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:35 PM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] trying to build h4toh5 tools
Thanks for the reply.
so wait though, do i need to point the configure to the hdf4 or hdf5
library?
Currently i am pointing it to the hdf5 library (in fact i haven't even
build the hdf4 library)
thanks
matt
On 5/13/2010 2:20 PM, H. Joe Lee wrote:
Hi, Matt!
You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and see
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:12 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] trying to build h4toh5 tools
Hi,
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
well, the configure command below is exactly what i am using (i also
tried passing CPPFLAGS=-DH5_USE_16_AP since i link against
hdf5-1.8.4-patch1, but it makes no difference).
However, the configure always fails with this:
checking how make searches directories... VPATH=DIR1 DIR2 ...
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5open in -lhdf5... no
configure: error: cannot find HDF5 library.
I guess i build the hdf5 library somehow wrong? What do i need to pass
to it for linker to find H5open?
thanks
matt
On 5/13/2010 5:53 PM, H. Joe Lee wrote:
Hi, Matt!
Building HDF-EOS2 is an option, not a requirement. However, having HDF4
library is a must.
Here's the simplest way to configure and build h4toh5 tool if you want
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:35 PM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] trying to build h4toh5 tools
Thanks for the reply.
so wait though, do i need to point the configure to the hdf4 or hdf5
library?
Currently i am pointing it to the hdf5 library (in fact i haven't even
build the hdf4 library)
thanks
matt
On 5/13/2010 2:20 PM, H. Joe Lee wrote:
Hi, Matt!
You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:12 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] trying to build h4toh5 tools
Hi,
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
The error indicates that configure for h4toh5 cannot find hdf5 library. I think if you set your LD_LIBRARY_PATH to point to the directory where libhdf5.so is installed, the error will go away. You may also try the following
1.) use --disable-shared flag to build HDF5 library. If you need HDF5 just for purpose of h4toh5, then also use --with-default-api-version=v16 flag, i.e.,
./configure --disable-shared --with-default-api-version=v16
Then run
make
make check
make install
to make sure HDF5 builds fine on your system
2) build HDF4
./configure --with-zlib=/.... --with-jpeg=/....
make
make check
make install
3) Use h4cc to configure h4toh5 as you did before. Use -DH5_USE_16_API with h4cc if you DID NOT use --with-default-api-version=v16.
Elena
···
On May 14, 2010, at 9:33 AM, Matt Funk wrote:
Hi ,
well, the configure command below is exactly what i am using (i also
tried passing CPPFLAGS=-DH5_USE_16_AP since i link against
hdf5-1.8.4-patch1, but it makes no difference).
However, the configure always fails with this:
checking how make searches directories... VPATH=DIR1 DIR2 ...
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5open in -lhdf5... no
configure: error: cannot find HDF5 library.
I guess i build the hdf5 library somehow wrong? What do i need to pass
to it for linker to find H5open?
thanks
matt
On 5/13/2010 5:53 PM, H. Joe Lee wrote:
Hi, Matt!
Building HDF-EOS2 is an option, not a requirement. However, having HDF4
library is a must.
Here's the simplest way to configure and build h4toh5 tool if you want to
skip building HDF-EOS2.
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:35 PM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] trying to build h4toh5 tools
Thanks for the reply.
so wait though, do i need to point the configure to the hdf4 or hdf5
library?
Currently i am pointing it to the hdf5 library (in fact i haven't even
build the hdf4 library)
thanks
matt
On 5/13/2010 2:20 PM, H. Joe Lee wrote:
Hi, Matt!
You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and see
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:12 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] trying to build h4toh5 tools
Hi,
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
i tried it and same thing. No luck. I wonder if it is linker problem?
The following is how i configured it and the results before making the
hdf5 libs.
Features:
---------
Parallel HDF5: no
High Level library: yes
Threadsafety: no
Default API Mapping: v16
With Deprecated Public Symbols: yes
I/O filters (external): deflate(zlib)
I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
MPE: no
Direct VFD: no
dmalloc: no
Clear file buffers before write: yes
Using memory checker: no
Function Stack Tracing: no
GPFS: no
Strict File Format Checks: no
Optimization Instrumentation: no
Linux Large File Support (LFS): yes
if anyone spots anything please let me know.
thanks
matt
On 5/14/2010 9:09 AM, H. Joe Lee wrote:
Hi, Matt!
I can see an 'I' is missing in your flag.
CPPFLAGS=-DH5_USE_16_API
If you specified it correctly and still have no luck, please try this when
you build the HDF5 library:
well, the configure command below is exactly what i am using (i also
tried passing CPPFLAGS=-DH5_USE_16_AP since i link against
hdf5-1.8.4-patch1, but it makes no difference).
However, the configure always fails with this:
checking how make searches directories... VPATH=DIR1 DIR2 ...
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5open in -lhdf5... no
configure: error: cannot find HDF5 library.
I guess i build the hdf5 library somehow wrong? What do i need to pass
to it for linker to find H5open?
thanks
matt
On 5/13/2010 5:53 PM, H. Joe Lee wrote:
Hi, Matt!
Building HDF-EOS2 is an option, not a requirement. However, having HDF4
library is a must.
Here's the simplest way to configure and build h4toh5 tool if you want
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:35 PM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] trying to build h4toh5 tools
Thanks for the reply.
so wait though, do i need to point the configure to the hdf4 or hdf5
library?
Currently i am pointing it to the hdf5 library (in fact i haven't even
build the hdf4 library)
thanks
matt
On 5/13/2010 2:20 PM, H. Joe Lee wrote:
Hi, Matt!
You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and
On Behalf Of Matt Funk
Sent: Thursday, May 13, 2010 3:12 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] trying to build h4toh5 tools
Hi,
i am having problem building the h4toh5 tools on a machine. I tried the
binaries first but that gave me a a core dump.
Anyway, i build the hdf5-1.8.4-patch1 libs and then configured h4h5tools
(and pointed the hdf5 build).
The h4h5tools configures alright.
However, when i issue: make i get the following:
gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
-DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
-DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
-DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
-DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
What happen was the following though. I had installed the jpeg library into a
directory in which i had an hdf5 build with mpi support. My guess is that this
directory was somehow hardwired into the configuration for the h4cc compiler.
So, when it came to building the h4toh5tools it tried to link that hdf5-mpi
build in even though i pointed to my other hdf5 build via --with-hdf5.
Anyway, sorry for all the issues and thanks
matt
···
On Friday 14 May 2010, Elena Pourmal wrote:
Matt,
The error indicates that configure for h4toh5 cannot find hdf5 library. I
think if you set your LD_LIBRARY_PATH to point to the directory where
libhdf5.so is installed, the error will go away. You may also try the
following
1.) use --disable-shared flag to build HDF5 library. If you need HDF5 just
for purpose of h4toh5, then also use --with-default-api-version=v16 flag,
i.e., ./configure --disable-shared --with-default-api-version=v16
Then run
make
make check
make install
to make sure HDF5 builds fine on your system
2) build HDF4
./configure --with-zlib=/.... --with-jpeg=/....
make
make check
make install
3) Use h4cc to configure h4toh5 as you did before. Use -DH5_USE_16_API with
h4cc if you DID NOT use --with-default-api-version=v16.
Elena
On May 14, 2010, at 9:33 AM, Matt Funk wrote:
> Hi ,
>
> well, the configure command below is exactly what i am using (i also
> tried passing CPPFLAGS=-DH5_USE_16_AP since i link against
> hdf5-1.8.4-patch1, but it makes no difference).
> However, the configure always fails with this:
> checking how make searches directories... VPATH=DIR1 DIR2 ...
> checking hdf5.h usability... yes
> checking hdf5.h presence... yes
> checking for hdf5.h... yes
> checking for H5open in -lhdf5... no
> configure: error: cannot find HDF5 library.
>
> I guess i build the hdf5 library somehow wrong? What do i need to pass
> to it for linker to find H5open?
>
> thanks
> matt
>
> On 5/13/2010 5:53 PM, H. Joe Lee wrote:
>> Hi, Matt!
>>
>> Building HDF-EOS2 is an option, not a requirement. However, having HDF4
>>
>> library is a must.
>>
>> Here's the simplest way to configure and build h4toh5 tool if you want
>> to
>>
>> skip building HDF-EOS2.
>>
>> %./configure --with-hdf5=/path/to/hdf5_library_install_prefix
>>
>> CC=/path/to/hdf4_library_install_prefix/bin/h4cc
>>
>> %make
>>
>> -----Original Message-----
>> From: hdf-forum-bounces@hdfgroup.org
>> [mailto:hdf-forum-bounces@hdfgroup.org] On Behalf Of Matt Funk
>> Sent: Thursday, May 13, 2010 4:26 PM
>> To: hdf-forum@hdfgroup.org
>> Subject: Re: [Hdf-forum] trying to build h4toh5 tools
>>
>> Hi,
>>
>> how come it have to build the hdf-eos2 libraries.
>> All i want to do is convert a regular hdf4 to hdf5 library
>>
>>
>> matt
>>
>> On 5/13/2010 2:52 PM, H. Joe Lee wrote:
>>> Hi, Matt!
>>>
>>> You need to point the configure to both hdf4 and hdf5 libraries.
>>>
>>> Typing
>>>
>>> %configure --help
>>>
>>> will give
>>>
>>> --with-hdfeos2=DIR Specify path to external hdfeos2 library.
>>>
>>> option to specify the location of hdfeos2 library and the hdfeos2
>>> library
>>
>> is
>>
>>> built on top of the hdf4 library.
>>>
>>> Please refer to this document for building hdfeos2 library.
>>>
>>> http://hdfeos.org/software/hdfeos.php#ref_sec:hdf-eos2
>>>
>>> Regards,
>>>
>>>
>>> -----Original Message-----
>>> From: hdf-forum-bounces@hdfgroup.org
>>
>> [mailto:hdf-forum-bounces@hdfgroup.org]
>>
>>> On Behalf Of Matt Funk
>>> Sent: Thursday, May 13, 2010 3:35 PM
>>> To: HDF Users Discussion List
>>> Subject: Re: [Hdf-forum] trying to build h4toh5 tools
>>>
>>> Thanks for the reply.
>>>
>>> so wait though, do i need to point the configure to the hdf4 or hdf5
>>> library?
>>> Currently i am pointing it to the hdf5 library (in fact i haven't even
>>> build the hdf4 library)
>>>
>>> thanks
>>> matt
>>>
>>> On 5/13/2010 2:20 PM, H. Joe Lee wrote:
>>>> Hi, Matt!
>>>>
>>>> You may want to try '%make CC=/path/to/hdf4_install_dir/bin/h4cc' and
>>>> see
>>>
>>> if
>>>
>>>> it works.
>>>>
>>>> --
>>>> +1(217)265-7710
>>>> http://hdfeos.org
>>>>
>>>> -----Original Message-----
>>>> From: hdf-forum-bounces@hdfgroup.org
>>>
>>> [mailto:hdf-forum-bounces@hdfgroup.org]
>>>
>>>> On Behalf Of Matt Funk
>>>> Sent: Thursday, May 13, 2010 3:12 PM
>>>> To: HDF Users Discussion List
>>>> Subject: [Hdf-forum] trying to build h4toh5 tools
>>>>
>>>> Hi,
>>>>
>>>> i am having problem building the h4toh5 tools on a machine. I tried
>>>> the binaries first but that gave me a a core dump.
>>>> Anyway, i build the hdf5-1.8.4-patch1 libs and then configured
>>>> h4h5tools (and pointed the hdf5 build).
>>>> The h4h5tools configures alright.
>>>>
>>>> However, when i issue: make i get the following:
>>>> gcc -DPACKAGE_NAME=\"H4H5Tools\" -DPACKAGE_TARNAME=\"h4h5tools\"
>>>> -DPACKAGE_VERSION=\"2.1.1\" -DPACKAGE_STRING=\"H4H5Tools\ 2.1.1\"
>>>> -DPACKAGE_BUGREPORT=\"help@hdfgroup.org\" -DPACKAGE_URL=\"\"
>>>> -DPACKAGE=\"h4h5tools\" -DVERSION=\"2.1.1\" -DSTDC_HEADERS=1
>>>> -DHAVE_HDF5_H=1 -DHAVE_LIBHDF5=1 -I.
>>
>> -I/home/mafunk/CODE/RSET/externalPackages/src/hdf5-1.8.4-patch1/hdf5/inc
>> lude
>>
>>>> -m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
>>>> h4toh5anno.o h4toh5anno.c
>>>> In file included from h4toh5main.h:43,
>>>>
>>>> from h4toh5anno.c:77:
>>>> h4toh5util.h:45:17: error: hdf.h: No such file or directory
>>>> h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
>>>> In file included from h4toh5util.h:49,
>>>>
>>>> from h4toh5main.h:43,
>>>>
>>>> from h4toh5anno.c:77:
>>>> h4toh5.h:25:19: error: hfile.h: No such file or directory
>>>> In file included from h4toh5util.h:49,
>>>>
>>>> from h4toh5main.h:43,
>>>>
>>>> from h4toh5anno.c:77:
>>>> what am i missing?
>>>>
>>>> thanks
>>>> matt
>>>>
>>>> _______________________________________________
>>>> Hdf-forum is for HDF software users discussion.
>>>> Hdf-forum@hdfgroup.org
>>>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>>>>
>>>>
>>>> _______________________________________________
>>>> Hdf-forum is for HDF software users discussion.
>>>> Hdf-forum@hdfgroup.org
>>>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>>>
>>> _______________________________________________
>>> Hdf-forum is for HDF software users discussion.
>>> Hdf-forum@hdfgroup.org
>>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>>>
>>>
>>> _______________________________________________
>>> Hdf-forum is for HDF software users discussion.
>>> Hdf-forum@hdfgroup.org
>>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> Hdf-forum@hdfgroup.org
>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>>
>>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> Hdf-forum@hdfgroup.org
>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@hdfgroup.org
> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
If your h4cc still doesn't find the hdf(4) headers, you should check
that the paths in h4cc are correct.
···
On Fri, May 14, 2010 at 1:49 PM, Matt Funk <mafunk@nmsu.edu> wrote:
Hi,
i tried it and same thing. No luck. I wonder if it is linker problem?
The following is how i configured it and the results before making the
hdf5 libs.
-m64 -MT h4toh5anno.o -MD -MP -MF .deps/h4toh5anno.Tpo -c -o
h4toh5anno.o h4toh5anno.c
In file included from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5util.h:45:17: error: hdf.h: No such file or directory
h4toh5util.h:46:19: error: mfhdf.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
h4toh5.h:25:19: error: hfile.h: No such file or directory
In file included from h4toh5util.h:49,
from h4toh5main.h:43,
from h4toh5anno.c:77:
--
George N. White III <aa056@chebucto.ns.ca>
Head of St. Margarets Bay, Nova Scotia
