No those are the expected err files from the source - there should be *.out.err
files that correspond to the *.out files that are generated from the tests.
Allen
···
On Thursday, August 20, 2015 08:19:02 AM Tiago Macarios wrote:
Hi Allen,
*.err files attached. Any ideas?
Thanks!
On Thu, Aug 20, 2015 at 7:28 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
> Those are all in the h5dump tools test. Are there any *.err files for
> those
> tests - in the build/tools/h5dump/std folder?
>
> Allen
>
> On Wednesday, August 19, 2015 07:54:40 PM Tiago Macarios wrote:
> > Hi,
> >
> > I am trying to build with cmake following this:
> > https://www.hdfgroup.org/HDF5/release/cmakebuild.html
> >
> > but I am having no luck. I am getting failed tests which in turn seems
> > to
> > stop the process. Can someone help me?
> >
> > Best,
> > mac
> >
> >
> > ============================================
> >
> > 99% tests passed, 19 tests failed out of 1975
> >
> > Total Test time (real) = 384.89 sec
> >
> > The following tests FAILED:
> > 1443 - H5DUMP-tgroup-2 (Failed)
> > 1447 - H5DUMP-tdset-2 (Failed)
> > 1455 - H5DUMP-tattr-3 (Failed)
> > 1471 - H5DUMP-tslink-D (Failed)
> > 1493 - H5DUMP-tcomp-3 (Failed)
> > 1503 - H5DUMP-tall-1 (Failed)
> > 1537 - H5DUMP-tarray1_big (Failed)
> > 1567 - H5DUMP-tall-2A (Failed)
> > 1569 - H5DUMP-tall-2A0 (Failed)
> > 1571 - H5DUMP-tall-2B (Failed)
> > 1593 - H5DUMP-tperror (Failed)
> > 1697 - H5DUMP-tdataregR (Failed)
> > 1699 - H5DUMP-tattrregR (Failed)
> > 1722 - H5DUMP-torderlinks1 (Failed)
> > 1724 - H5DUMP-torderlinks2 (Failed)
> > 1728 - H5DUMP-textlinksrc (Failed)
> > 1730 - H5DUMP-textlinkfar (Failed)
> > 1732 - H5DUMP-textlink (Failed)
> > 1734 - H5DUMP-filter_fail (Failed)
> >
> > CMake Error at CTestScript.cmake:279 (message):
> > Failed packaging: 1
> >
> > Call Stack (most recent call first):
> > HDF518config.cmake:134 (include)
On Thu, Aug 20, 2015 at 8:56 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
No those are the expected err files from the source - there should be
*.out.err
files that correspond to the *.out files that are generated from the tests.
Allen
On Thursday, August 20, 2015 08:19:02 AM Tiago Macarios wrote:
> Hi Allen,
>
> *.err files attached. Any ideas?
>
> Thanks!
>
> On Thu, Aug 20, 2015 at 7:28 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
> > Those are all in the h5dump tools test. Are there any *.err files for
> > those
> > tests - in the build/tools/h5dump/std folder?
> >
> > Allen
> >
> > On Wednesday, August 19, 2015 07:54:40 PM Tiago Macarios wrote:
> > > Hi,
> > >
> > > I am trying to build with cmake following this:
> > > https://www.hdfgroup.org/HDF5/release/cmakebuild.html
> > >
> > > but I am having no luck. I am getting failed tests which in turn
seems
> > > to
> > > stop the process. Can someone help me?
> > >
> > > Best,
> > > mac
> > >
> > >
> > > ============================================
> > >
> > > 99% tests passed, 19 tests failed out of 1975
> > >
> > > Total Test time (real) = 384.89 sec
> > >
> > > The following tests FAILED:
> > > 1443 - H5DUMP-tgroup-2 (Failed)
> > > 1447 - H5DUMP-tdset-2 (Failed)
> > > 1455 - H5DUMP-tattr-3 (Failed)
> > > 1471 - H5DUMP-tslink-D (Failed)
> > > 1493 - H5DUMP-tcomp-3 (Failed)
> > > 1503 - H5DUMP-tall-1 (Failed)
> > > 1537 - H5DUMP-tarray1_big (Failed)
> > > 1567 - H5DUMP-tall-2A (Failed)
> > > 1569 - H5DUMP-tall-2A0 (Failed)
> > > 1571 - H5DUMP-tall-2B (Failed)
> > > 1593 - H5DUMP-tperror (Failed)
> > > 1697 - H5DUMP-tdataregR (Failed)
> > > 1699 - H5DUMP-tattrregR (Failed)
> > > 1722 - H5DUMP-torderlinks1 (Failed)
> > > 1724 - H5DUMP-torderlinks2 (Failed)
> > > 1728 - H5DUMP-textlinksrc (Failed)
> > > 1730 - H5DUMP-textlinkfar (Failed)
> > > 1732 - H5DUMP-textlink (Failed)
> > > 1734 - H5DUMP-filter_fail (Failed)
> > >
> > > CMake Error at CTestScript.cmake:279 (message):
> > > Failed packaging: 1
> > >
> > > Call Stack (most recent call first):
> > > HDF518config.cmake:134 (include)
So all the failing tests have *.out.err files of 0 bytes which will fail the
compare with the corresponding *.err file.
Next take a look at the *.out files (they will compare the *.ddl files)
Allen
···
On Thursday, August 20, 2015 09:29:19 AM Tiago Macarios wrote:
Hi Allen,
Thanks for helping. Most of the *out.err are empty. I zipped all the
build\tools\h5dump\testfiles\std\*.err files now.
Best,
Mac
On Thu, Aug 20, 2015 at 8:56 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
> No those are the expected err files from the source - there should be
> *.out.err
> files that correspond to the *.out files that are generated from the
> tests.
>
> Allen
>
> On Thursday, August 20, 2015 08:19:02 AM Tiago Macarios wrote:
> > Hi Allen,
> >
> > *.err files attached. Any ideas?
> >
> > Thanks!
> >
> > On Thu, Aug 20, 2015 at 7:28 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
> > > Those are all in the h5dump tools test. Are there any *.err files for
> > > those
> > > tests - in the build/tools/h5dump/std folder?
> > >
> > > Allen
> > >
> > > On Wednesday, August 19, 2015 07:54:40 PM Tiago Macarios wrote:
> > > > Hi,
> > > >
> > > > I am trying to build with cmake following this:
> > > > https://www.hdfgroup.org/HDF5/release/cmakebuild.html
> > > >
> > > > but I am having no luck. I am getting failed tests which in turn
>
> seems
>
> > > > to
> > > > stop the process. Can someone help me?
> > > >
> > > > Best,
> > > > mac
> > > >
> > > >
> > > > ============================================
> > > >
> > > > 99% tests passed, 19 tests failed out of 1975
> > > >
> > > > Total Test time (real) = 384.89 sec
> > > >
> > > > The following tests FAILED:
> > > > 1443 - H5DUMP-tgroup-2 (Failed)
> > > > 1447 - H5DUMP-tdset-2 (Failed)
> > > > 1455 - H5DUMP-tattr-3 (Failed)
> > > > 1471 - H5DUMP-tslink-D (Failed)
> > > > 1493 - H5DUMP-tcomp-3 (Failed)
> > > > 1503 - H5DUMP-tall-1 (Failed)
> > > > 1537 - H5DUMP-tarray1_big (Failed)
> > > > 1567 - H5DUMP-tall-2A (Failed)
> > > > 1569 - H5DUMP-tall-2A0 (Failed)
> > > > 1571 - H5DUMP-tall-2B (Failed)
> > > > 1593 - H5DUMP-tperror (Failed)
> > > > 1697 - H5DUMP-tdataregR (Failed)
> > > > 1699 - H5DUMP-tattrregR (Failed)
> > > > 1722 - H5DUMP-torderlinks1 (Failed)
> > > > 1724 - H5DUMP-torderlinks2 (Failed)
> > > > 1728 - H5DUMP-textlinksrc (Failed)
> > > > 1730 - H5DUMP-textlinkfar (Failed)
> > > > 1732 - H5DUMP-textlink (Failed)
> > > > 1734 - H5DUMP-filter_fail (Failed)
> > > >
> > > > CMake Error at CTestScript.cmake:279 (message):
> > > > Failed packaging: 1
> > > >
> > > > Call Stack (most recent call first):
> > > > HDF518config.cmake:134 (include)
I diffed the files it looks like the only difference is that the out files
have errors attached to them, ex:
*tgroup-2.out ======================================*
HDF5 "tgroup.h5" {
GROUP "/g2" {
GROUP "g2.1" {
GROUP "g2.1.1" {
}
GROUP "g2.1.2" {
}
GROUP "g2.1.3" {
}
}
}
GROUP "/" {
GROUP "g1" {
GROUP "g1.1" {
}
GROUP "g1.2" {
}
}
GROUP "g2" {
GROUP "g2.1" {
GROUP "g2.1.1" {
}
GROUP "g2.1.2" {
}
GROUP "g2.1.3" {
}
}
}
GROUP "g3" {
GROUP "g3.1" {
}
GROUP "g3.2" {
}
GROUP "g3.3" {
}
GROUP "g3.4" {
}
}
}
GROUP "/y" {
}
}
HDF5-DIAG: Error detected in HDF5 (1.8.15-patch1) thread 0: #000: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5G.c line 467 in H5Gopen2():
unable to open group
major: Symbol table
minor: Can't open object #001: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gint.c line 320 in
H5G__open_name(): group not found
major: Symbol table
minor: Object not found #002: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 430 in
H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found #003: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 861 in
H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found #004: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 641 in
H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed #005: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 385 in
H5G_loc_find_cb(): object 'y' doesn't exist
major: Symbol table
minor: Object not found
h5dump error: unable to open group "/y"
*tgroup-2.ddl ======================================*
HDF5 "tgroup.h5" {
GROUP "/g2" {
GROUP "g2.1" {
GROUP "g2.1.1" {
}
GROUP "g2.1.2" {
}
GROUP "g2.1.3" {
}
}
}
GROUP "/" {
GROUP "g1" {
GROUP "g1.1" {
}
GROUP "g1.2" {
}
}
GROUP "g2" {
GROUP "g2.1" {
GROUP "g2.1.1" {
}
GROUP "g2.1.2" {
}
GROUP "g2.1.3" {
}
}
}
GROUP "g3" {
GROUP "g3.1" {
}
GROUP "g3.2" {
}
GROUP "g3.3" {
}
GROUP "g3.4" {
}
}
}
GROUP "/y" {
}
}
-----------
-------------
HDF5-DIAG: Error detected in HDF5 (1.8.15-patch1) thread 0:
=> #000: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5G.c line 467 in H5Gopen2():
unable to open group =>
major: Symbol table
=>
minor: Can't open object
=> #001: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gint.c line 320 in
H5G__open_name(): group not found =>
major: Symbol table
=>
minor: Object not found
=> #002: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 430 in
H5G_loc_find(): can't find object =>
major: Symbol table
=>
minor: Object not found
=> #003: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 861 in
H5G_traverse(): internal path traversal failed =>
major: Symbol table
=>
minor: Object not found
=> #004: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 641 in
H5G_traverse_real(): traversal operator failed =>
major: Symbol table
=>
minor: Callback failed
=> #005: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 385 in
H5G_loc_find_cb(): object 'y' doesn't exist =>
major: Symbol table
=>
minor: Object not found
=>
h5dump error: unable to open group "/y"
On Thu, Aug 20, 2015 at 10:20 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
So all the failing tests have *.out.err files of 0 bytes which will fail
the
compare with the corresponding *.err file.
Next take a look at the *.out files (they will compare the *.ddl files)
Allen
On Thursday, August 20, 2015 09:29:19 AM Tiago Macarios wrote:
> Hi Allen,
>
> Thanks for helping. Most of the *out.err are empty. I zipped all the
> build\tools\h5dump\testfiles\std\*.err files now.
>
> Best,
> Mac
>
> On Thu, Aug 20, 2015 at 8:56 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
> > No those are the expected err files from the source - there should be
> > *.out.err
> > files that correspond to the *.out files that are generated from the
> > tests.
> >
> > Allen
> >
> > On Thursday, August 20, 2015 08:19:02 AM Tiago Macarios wrote:
> > > Hi Allen,
> > >
> > > *.err files attached. Any ideas?
> > >
> > > Thanks!
> > >
> > > On Thu, Aug 20, 2015 at 7:28 AM, Allen Byrne <byrn@hdfgroup.org> > wrote:
> > > > Those are all in the h5dump tools test. Are there any *.err files
for
> > > > those
> > > > tests - in the build/tools/h5dump/std folder?
> > > >
> > > > Allen
> > > >
> > > > On Wednesday, August 19, 2015 07:54:40 PM Tiago Macarios wrote:
> > > > > Hi,
> > > > >
> > > > > I am trying to build with cmake following this:
> > > > > https://www.hdfgroup.org/HDF5/release/cmakebuild.html
> > > > >
> > > > > but I am having no luck. I am getting failed tests which in turn
> >
> > seems
> >
> > > > > to
> > > > > stop the process. Can someone help me?
> > > > >
> > > > > Best,
> > > > > mac
> > > > >
> > > > >
> > > > > ============================================
> > > > >
> > > > > 99% tests passed, 19 tests failed out of 1975
> > > > >
> > > > > Total Test time (real) = 384.89 sec
> > > > >
> > > > > The following tests FAILED:
> > > > > 1443 - H5DUMP-tgroup-2 (Failed)
> > > > > 1447 - H5DUMP-tdset-2 (Failed)
> > > > > 1455 - H5DUMP-tattr-3 (Failed)
> > > > > 1471 - H5DUMP-tslink-D (Failed)
> > > > > 1493 - H5DUMP-tcomp-3 (Failed)
> > > > > 1503 - H5DUMP-tall-1 (Failed)
> > > > > 1537 - H5DUMP-tarray1_big (Failed)
> > > > > 1567 - H5DUMP-tall-2A (Failed)
> > > > > 1569 - H5DUMP-tall-2A0 (Failed)
> > > > > 1571 - H5DUMP-tall-2B (Failed)
> > > > > 1593 - H5DUMP-tperror (Failed)
> > > > > 1697 - H5DUMP-tdataregR (Failed)
> > > > > 1699 - H5DUMP-tattrregR (Failed)
> > > > > 1722 - H5DUMP-torderlinks1 (Failed)
> > > > > 1724 - H5DUMP-torderlinks2 (Failed)
> > > > > 1728 - H5DUMP-textlinksrc (Failed)
> > > > > 1730 - H5DUMP-textlinkfar (Failed)
> > > > > 1732 - H5DUMP-textlink (Failed)
> > > > > 1734 - H5DUMP-filter_fail (Failed)
> > > > >
> > > > > CMake Error at CTestScript.cmake:279 (message):
> > > > > Failed packaging: 1
> > > > >
> > > > > Call Stack (most recent call first):
> > > > > HDF518config.cmake:134 (include)
I diffed the files it looks like the only difference is that the out files
have errors attached to them, ex:
*tgroup-2.out ======================================*
HDF5 "tgroup.h5" {
GROUP "/g2" {
GROUP "g2.1" {
GROUP "g2.1.1" {
}
GROUP "g2.1.2" {
}
GROUP "g2.1.3" {
}
}
}
GROUP "/" {
GROUP "g1" {
GROUP "g1.1" {
}
GROUP "g1.2" {
}
}
GROUP "g2" {
GROUP "g2.1" {
GROUP "g2.1.1" {
}
GROUP "g2.1.2" {
}
GROUP "g2.1.3" {
}
}
}
GROUP "g3" {
GROUP "g3.1" {
}
GROUP "g3.2" {
}
GROUP "g3.3" {
}
GROUP "g3.4" {
}
}
}
GROUP "/y" {
}
}
HDF5-DIAG: Error detected in HDF5 (1.8.15-patch1) thread 0: #000: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5G.c line 467 in
H5Gopen2(): unable to open group
major: Symbol table
minor: Can't open object #001: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gint.c line 320 in
H5G__open_name(): group not found
major: Symbol table
minor: Object not found #002: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 430 in
H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found #003: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 861 in
H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found #004: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 641 in
H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed #005: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 385 in
H5G_loc_find_cb(): object 'y' doesn't exist
major: Symbol table
minor: Object not found
h5dump error: unable to open group "/y"
*tgroup-2.ddl ======================================*
HDF5 "tgroup.h5" {
GROUP "/g2" {
GROUP "g2.1" {
GROUP "g2.1.1" {
}
GROUP "g2.1.2" {
}
GROUP "g2.1.3" {
}
}
}
GROUP "/" {
GROUP "g1" {
GROUP "g1.1" {
}
GROUP "g1.2" {
}
}
GROUP "g2" {
GROUP "g2.1" {
GROUP "g2.1.1" {
}
GROUP "g2.1.2" {
}
GROUP "g2.1.3" {
}
}
}
GROUP "g3" {
GROUP "g3.1" {
}
GROUP "g3.2" {
}
GROUP "g3.3" {
}
GROUP "g3.4" {
}
}
}
GROUP "/y" {
}
}
*diff ======================================*
InputObject
SideIndicator
-----------
-------------
HDF5-DIAG: Error detected in HDF5 (1.8.15-patch1) thread 0:
=> #000: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5G.c line 467 in
H5Gopen2(): unable to open group =>
major: Symbol table
=>
minor: Can't open object
=> #001: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gint.c line 320 in
H5G__open_name(): group not found =>
major: Symbol table
=>
minor: Object not found
=> #002: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 430 in
H5G_loc_find(): can't find object =>
major: Symbol table
=>
minor: Object not found
=> #003: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 861 in
H5G_traverse(): internal path traversal failed =>
major: Symbol table
=>
minor: Object not found
=> #004: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gtraverse.c line 641 in
H5G_traverse_real(): traversal operator failed =>
major: Symbol table
=>
minor: Callback failed
=> #005: E:\HDF518CMake\hdf5-1.8.15-patch1\src\H5Gloc.c line 385 in
H5G_loc_find_cb(): object 'y' doesn't exist =>
major: Symbol table
=>
minor: Object not found
=>
h5dump error: unable to open group "/y"
On Thu, Aug 20, 2015 at 10:20 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
So all the failing tests have *.out.err files of 0 bytes which will fail
the
compare with the corresponding *.err file.
Next take a look at the *.out files (they will compare the *.ddl files)
Allen
On Thursday, August 20, 2015 09:29:19 AM Tiago Macarios wrote:
> Hi Allen,
>
> Thanks for helping. Most of the *out.err are empty. I zipped all the
> build\tools\h5dump\testfiles\std\*.err files now.
>
> Best,
> Mac
>
> On Thu, Aug 20, 2015 at 8:56 AM, Allen Byrne <byrn@hdfgroup.org> wrote:
> > No those are the expected err files from the source - there should be
> > *.out.err
> > files that correspond to the *.out files that are generated from the
> > tests.
> >
> > Allen
> >
> > On Thursday, August 20, 2015 08:19:02 AM Tiago Macarios wrote:
> > > Hi Allen,
> > >
> > > *.err files attached. Any ideas?
> > >
> > > Thanks!
> > >
> > > On Thu, Aug 20, 2015 at 7:28 AM, Allen Byrne <byrn@hdfgroup.org> >> wrote:
> > > > Those are all in the h5dump tools test. Are there any *.err files
for
> > > > those
> > > > tests - in the build/tools/h5dump/std folder?
> > > >
> > > > Allen
> > > >
> > > > On Wednesday, August 19, 2015 07:54:40 PM Tiago Macarios wrote:
> > > > > Hi,
> > > > >
> > > > > I am trying to build with cmake following this:
> > > > > https://www.hdfgroup.org/HDF5/release/cmakebuild.html
> > > > >
> > > > > but I am having no luck. I am getting failed tests which in turn
> >
> > seems
> >
> > > > > to
> > > > > stop the process. Can someone help me?
> > > > >
> > > > > Best,
> > > > > mac
> > > > >
> > > > >
> > > > > ============================================
> > > > >
> > > > > 99% tests passed, 19 tests failed out of 1975
> > > > >
> > > > > Total Test time (real) = 384.89 sec
> > > > >
> > > > > The following tests FAILED:
> > > > > 1443 - H5DUMP-tgroup-2 (Failed)
> > > > > 1447 - H5DUMP-tdset-2 (Failed)
> > > > > 1455 - H5DUMP-tattr-3 (Failed)
> > > > > 1471 - H5DUMP-tslink-D (Failed)
> > > > > 1493 - H5DUMP-tcomp-3 (Failed)
> > > > > 1503 - H5DUMP-tall-1 (Failed)
> > > > > 1537 - H5DUMP-tarray1_big (Failed)
> > > > > 1567 - H5DUMP-tall-2A (Failed)
> > > > > 1569 - H5DUMP-tall-2A0 (Failed)
> > > > > 1571 - H5DUMP-tall-2B (Failed)
> > > > > 1593 - H5DUMP-tperror (Failed)
> > > > > 1697 - H5DUMP-tdataregR (Failed)
> > > > > 1699 - H5DUMP-tattrregR (Failed)
> > > > > 1722 - H5DUMP-torderlinks1 (Failed)
> > > > > 1724 - H5DUMP-torderlinks2 (Failed)
> > > > > 1728 - H5DUMP-textlinksrc (Failed)
> > > > > 1730 - H5DUMP-textlinkfar (Failed)
> > > > > 1732 - H5DUMP-textlink (Failed)
> > > > > 1734 - H5DUMP-filter_fail (Failed)
> > > > >
> > > > > CMake Error at CTestScript.cmake:279 (message):
> > > > > Failed packaging: 1
> > > > >
> > > > > Call Stack (most recent call first):
> > > > > HDF518config.cmake:134 (include)
