It should be in the directory where you executed the “configure” command.
Sorry, I can’t find any config.log file. Where should it be?
···
On Jun 27, 2016, at 2:47 AM, Øyvind Sylta <Sylta@migris.no<mailto:Sylta@migris.no>> wrote:
Fra: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] På vegne av Scot Breitenfeld
Sendt: 24 June 2016 19:00
Til: HDF Users Discussion List <hdf-forum@lists.hdfgroup.org<mailto:hdf-forum@lists.hdfgroup.org>>
Emne: Re: [Hdf-forum] reading compound hdf5 data
Can you send the config.log file?
On Jun 24, 2016, at 11:39 AM, Øyvind Sylta <Sylta@migris.no<mailto:Sylta@migris.no>> wrote:
Hello,
I still get the same message, and it seems to be related to f_ptr (see below). I use the following code sequence (I have removed code that should not be relevant):
USE HDF5
USE ISO_C_BINDING
TYPE sensor_t
double precision:: xx,yy,zz
END TYPE sensor_t
TYPE(sensor_t), DIMENSION(1:dimes), TARGET :: rdata
TYPE(C_PTR) :: f_ptr
CALL h5dopen_f (file, cname, dset, ierr)
f_ptr = C_LOC(rdata(1))
CALL h5dread_f(dset, H5T_NATIVE_DOUBLE, f_ptr , ierr )
Then I get the following message when building:
Error 1 error #6285: There is no matching specific subroutine for this generic subroutine call. [H5DREAD_F]
I do use the h5dread_f() call other places in the program, so I know that it works. In these places I use it with a normal array and a dim variable, e.g.:
CALL h5dopen_f (file, cname, dset, ierr)
CALL h5dread_f(dset, H5T_NATIVE_REAL, rresult, dims, ierr)
Which works fine. It is only when I add the code containing the f_ptr (which I seem to need for the compound data) that I get problems. This is what confuses me.
Øyvind
Fra: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] På vegne av Scot Breitenfeld
Sendt: 24 June 2016 18:00
Til: HDF Users Discussion List <hdf-forum@lists.hdfgroup.org<mailto:hdf-forum@lists.hdfgroup.org>>
Emne: Re: [Hdf-forum] reading compound hdf5 data
On Jun 24, 2016, at 3:57 AM, Øyvind Sylta <Sylta@migris.no<mailto:Sylta@migris.no>> wrote:
Thanks,
I think my problem may be related to the version of the compiler (2011 release of Intel fortran) that I am using and the version of hdf (1.8.11) I am using. I will try this again when I have upgraded my compiler to the most recent one and moved to hdf 1.10. I was planning to delay the move to hdf 1.10 until the first couple of bugfix releases were out (1.10.1?). I see that a patch release is now out. Do you have any idea on when 1.10.1 will be released
Out of curiosity, does the example work with your current setup? I don’t recall having any issues with 2011 Intel fortran. Does the Fortran “make check” pass?
No set date yet for 1.10.1, so this is not for certain, but it should be in the next few months.
Øyvind
Fra: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] På vegne av Scot Breitenfeld
Sendt: 23 June 2016 18:51
Til: HDF Users Discussion List <hdf-forum@lists.hdfgroup.org<mailto:hdf-forum@lists.hdfgroup.org>>
Emne: Re: [Hdf-forum] reading compound hdf5 data
If you are using the 1.8 version of hdf5 then you have to enable Fortran 2003 features by building with —enable-fortran —enable-fortran2003.
For 1.10, you just have to use —enable-fortran.
Also, there is no dimension argument (dim3) in the F2003 version of h5dread_f:
SUBROUTINE h5dread_f(dset_id, mem_type_id, buf, hdferr, &
mem_space_id, file_space_id, xfer_prp)
INTEGER(HID_T), INTENT(IN) :: dset_id
INTEGER(HID_T), INTENT(IN) :: mem_type_id
TYPE(C_PTR) , INTENT(INOUT) :: buf
INTEGER , INTENT(OUT) :: hdferr
INTEGER(HID_T), INTENT(IN) , OPTIONAL :: mem_space_id
INTEGER(HID_T), INTENT(IN) , OPTIONAL :: file_space_id
INTEGER(HID_T), INTENT(IN) , OPTIONAL :: xfer_prp
On Jun 23, 2016, at 10:37 AM, Øyvind Sylta <Sylta@migris.no<mailto:Sylta@migris.no>> wrote:
I guess it ought to work, but I get a compile error: there is no matching specific subroutine for this generic subroutine call,
which refers to h5dread_f() .
If I do not use f_ptr ,it compiles. I use
TYPE(C_PTR) :: f_ptr
to define p_ptr.
Any comments?
I am using the Intel Fortran compiler
Oyvind
<image001.jpg><image002.jpg>
-----Opprinnelig melding-----
Fra: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] På vegne av Scot Breitenfeld
Sendt: 23 June 2016 15:58
Til: HDF Users Discussion List <hdf-forum@lists.hdfgroup.org<mailto:hdf-forum@lists.hdfgroup.org>>
Emne: Re: [Hdf-forum] reading compound hdf5 data
Does the example h5ex_t_cmpd_F03.f90 at
https://www.hdfgroup.org/HDF5/examples/api18-fortran.html
help?
On Jun 23, 2016, at 7:41 AM, Øyvind Sylta <Sylta@migris.no<mailto:Sylta@migris.no>> wrote:
Is there a simple Fortran90 instruction on reading a hdf5 dataset that uses compound and where the dataset consists of 3 groups (x, y, z) in a 2D array as shown in the figure. It should be easy to load this data into my array(s), but I am stuck here.
! file, dset, space, dims3 and ndims3 are initialised as hdf5 variables
CALL h5dopen_f (file, “RESQML/xyz”, dset, ierr)
!call h5tget_nmembers_f(dset, members, ierr) !why does this call not work?
!
! Get dataspace.
!
CALL h5dget_space_f(dset, space, ierr)
CALL h5sget_simple_extent_dims_f(space, dims3, ndims3, nrank)
! code to insert after here to load the data?
<image001.jpg>
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