[problem configuring parallel installation of HDF5]

maxim.abalenkov · June 4, 2015, 10:42am

Dear all,

I experience a problem configuring a parallel installation of HDF5 version
1.8.15. I would like to configure it with Intel Fortran compiler 14.0.0
20130728 and MPICH 3.1.4 on Arch Linux 64-bit. As a test I have done a
sequential configuration, that worked. The environment flags I have used
were:

export F77=$MPICH/mpifort
export F90=$MPICH/mpifort
export F9X=$MPICH/mpifort
export CC=$MPICH/mpicc
export FFLAGS="-I/usr/include/"
export CFLAGS="-I/usr/include/"
export LDFLAGS="-L/usr/lib/"

The configure command was launched with the following switches:

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
                --with-zlib=/opt/zlib/include,/opt/zlib/lib \
                --with-szlib=/opt/szip/include,/opt/szip/lib \
                --enable-production --build=x86_64

The configure command for parallel HDF has an additional switch
(--enable-parallel):

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
                --with-zlib=/opt/zlib/include,/opt/zlib/lib \
                --with-szlib=/opt/szip/include,/opt/szip/lib \
                --enable-production --build=x86_64 \
                --enable-parallel

Parallel configuration breaks with the following error message:

checking whether a simple MPI-IO C program can be linked... no
configure: error: unable to link a simple MPI-IO C program

As a test I have tried to compile and run "sample_mpio.f90" provided in the
README_parallel file:

mpifort sample_mpio.f90 -o sample_mpio
mpiexec -n 4 ./sample_mpio

The sample program compiles and runs perfectly fine.

Running configuration script with the superuser privileges is necessary,
since otherwise I receive an access denied messages in the middle of the
configuration and configure script fails. Any guidance or hints would be
most welcome. The config.log file is attached.

config.log (173 KB)

···

--
Kind regards,
Maxim Abalenkov

Pierre_de_Buyl · June 4, 2015, 1:03pm

Can you try with

export CPPFLAGS="-I/usr/include"

(or the appropriate path the the mpi.h headers)?

The complaint by the compiler is about finding "mpi.h".

Regards,

Pierre

···

On Thu, Jun 04, 2015 at 11:42:22AM +0100, Maxim Abalenkov wrote:

Dear all,

I experience a problem configuring a parallel installation of HDF5 version
1.8.15. I would like to configure it with Intel Fortran compiler 14.0.0
20130728 and MPICH 3.1.4 on Arch Linux 64-bit. As a test I have done a
sequential configuration, that worked. The environment flags I have used
were:

export F77=$MPICH/mpifort
export F90=$MPICH/mpifort
export F9X=$MPICH/mpifort
export CC=$MPICH/mpicc
export FFLAGS="-I/usr/include/"
export CFLAGS="-I/usr/include/"
export LDFLAGS="-L/usr/lib/"

The configure command was launched with the following switches:

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
                --with-zlib=/opt/zlib/include,/opt/zlib/lib \
                --with-szlib=/opt/szip/include,/opt/szip/lib \
                --enable-production --build=x86_64

The configure command for parallel HDF has an additional switch
(--enable-parallel):

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
                --with-zlib=/opt/zlib/include,/opt/zlib/lib \
                --with-szlib=/opt/szip/include,/opt/szip/lib \
                --enable-production --build=x86_64 \
                --enable-parallel

Parallel configuration breaks with the following error message:

checking whether a simple MPI-IO C program can be linked... no
configure: error: unable to link a simple MPI-IO C program

As a test I have tried to compile and run "sample_mpio.f90" provided in the
README_parallel file:

mpifort sample_mpio.f90 -o sample_mpio
mpiexec -n 4 ./sample_mpio

The sample program compiles and runs perfectly fine.

Running configuration script with the superuser privileges is necessary,
since otherwise I receive an access denied messages in the middle of the
configuration and configure script fails. Any guidance or hints would be
most welcome. The config.log file is attached.

--
Kind regards,
Maxim Abalenkov

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by HDF5 configure 1.8.15, which was
generated by GNU Autoconf 2.69. Invocation command line was

  $ ./configure --prefix=/opt/hdf5 --enable-fortran --enable-fortran2003 --with-zlib=/opt/zlib/include,/opt/zlib/lib --with-szlib=/opt/szip/include,/opt/szip/lib --enable-production --build=x86_64 --enable-parallel

## --------- ##
## Platform. ##
## --------- ##

hostname = turing
uname -m = x86_64
uname -r = 4.0.4-2-ARCH
uname -s = Linux
uname -v = #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /opt/mpich/bin
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/mpirt/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64_mic
PATH: /opt/intel/composer_xe_2013_sp1.0.080/debugger/gui/intel64
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/lib/jvm/default/bin
PATH: /usr/lib32/jvm/default/bin
PATH: /usr/bin/site_perl
PATH: /usr/bin/vendor_perl
PATH: /usr/bin/core_perl

## ----------- ##
## Core tests. ##
## ----------- ##

configure:3072: checking for a BSD-compatible install
configure:3140: result: /usr/bin/install -c
configure:3151: checking whether build environment is sane
configure:3206: result: yes
configure:3357: checking for a thread-safe mkdir -p
configure:3396: result: /usr/bin/mkdir -p
configure:3403: checking for gawk
configure:3419: found /usr/bin/gawk
configure:3430: result: gawk
configure:3441: checking whether make sets $(MAKE)
configure:3463: result: yes
configure:3492: checking whether make supports nested variables
configure:3509: result: yes
configure:3645: checking whether make supports nested variables
configure:3662: result: yes
configure:3685: checking whether to enable maintainer-specific portions of Makefiles
configure:3694: result: no
configure:3738: checking build system type
configure:3752: result: x86_64-pc-none
configure:3772: checking host system type
configure:3785: result: x86_64-pc-none
configure:3853: checking shell variables initial values
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as_cr_digits=0123456789
as_cr_letters=abcdefghijklmnopqrstuvwxyz
as_dir=/usr/bin
as_dirname=dirname
as_echo='printf %s\n'
as_echo_n='printf %s'
as_executable_p=as_fn_executable_p
as_expr=expr
as_have_required=yes
as_lineno_1=477
as_lineno_1a=477
as_lineno_2=478
as_lineno_2a=478
as_ln_s='ln -s'
as_me=configure
as_mkdir_p='mkdir -p "$as_dir"'
as_myself=./configure
as_nl='
'
as_required='as_fn_return () { (exit $1); }
as_fn_success () { as_fn_return 0; }
as_fn_failure () { as_fn_return 1; }
as_fn_ret_success () { return 0; }
as_fn_ret_failure () { return 1; }

exitcode=0
as_fn_success || { exitcode=1; echo as_fn_success failed.; }
as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
if ( set x; as_fn_ret_success y && test x = "$1" ); then :

else
  exitcode=1; echo positional parameters were not saved.
fi
test x$exitcode = x0 || exit 1
test -x / || exit 1'
as_save_IFS='
'
as_suggested=' as_lineno_1=198 as_lineno_1a=$LINENO
  as_lineno_2=199 as_lineno_2a=$LINENO
  eval '\''test "x$as_lineno_1'\''$as_run'\''" != "x$as_lineno_2'\''$as_run'\''" &&
  test "x`expr $as_lineno_1'\''$as_run'\'' + 1`" = "x$as_lineno_2'\''$as_run'\''"'\'' || exit 1

  test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || (
    ECHO='\''\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'\''
    ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO
    ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO$ECHO
    PATH=/empty FPATH=/empty; export PATH FPATH
    test "X`printf %s $ECHO`" = "X$ECHO" \
      >> test "X`print -r -- $ECHO`" = "X$ECHO" ) || exit 1
test $(( 1 + 1 )) = 2 || exit 1'
as_test_x='test -x'
as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_unset=as_fn_unset
as_var=MAILPATH
bindir='${exec_prefix}/bin'
build=x86_64-pc-none
build_alias=x86_64
build_cpu=x86_64
build_os=none
build_vendor=pc
cache_file=/dev/null
cross_compiling=no
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_fortran=yes
enable_fortran2003=yes
enable_parallel=yes
enable_production=yes
exec_prefix=NONE
host=x86_64-pc-none
host_cpu=x86_64
host_os=none
host_vendor=pc
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
no_create=
no_recursion=
oldincludedir=/usr/include
pdfdir='${docdir}'
prefix=/opt/hdf5
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
psdir='${docdir}'
saved_user_CFLAGS=
saved_user_CPPFLAGS=
saved_user_CXXFLAGS=
saved_user_FCFLAGS=
saved_user_LDFLAGS=
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
silent=
site=
srcdir=.
subdirs=
sysconfdir='${prefix}/etc'
target=
verbose=
with_szlib=/opt/szip/include,/opt/szip/lib
with_zlib=/opt/zlib/include,/opt/zlib/lib
x_includes=NONE
x_libraries=NONE
configure:3856: result: done
configure:3905: checking if basename works
configure:3911: result: yes
configure:3916: checking if xargs works
configure:3922: result: yes
configure:3930: checking for cached host
configure:3937: result: none
configure:3997: checking for config x86_64-pc-none
configure:4005: result: no
configure:3997: checking for config x86_64-pc-none
configure:4005: result: no
configure:3997: checking for config pc-none
configure:4005: result: no
configure:3997: checking for config pc-none
configure:4005: result: no
configure:3997: checking for config x86_64-none
configure:4005: result: no
configure:3997: checking for config x86_64-none
configure:4005: result: no
configure:3997: checking for config x86_64-pc
configure:4005: result: no
configure:3997: checking for config none
configure:4005: result: no
configure:3997: checking for config none
configure:4005: result: no
configure:3997: checking for config pc
configure:4005: result: no
configure:3997: checking for config x86_64
configure:4005: result: no
configure:4017: checking for config ./config/site-specific/host-turing
configure:4025: result: no
configure:4102: checking for gcc
configure:4118: found /usr/bin/gcc
configure:4129: result: gcc
configure:4358: checking for C compiler version
configure:4367: gcc --version >&5
gcc (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4378: $? = 0
configure:4367: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:4378: $? = 0
configure:4367: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4378: $? = 1
configure:4367: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:4378: $? = 1
configure:4398: checking whether the C compiler works
configure:4420: gcc conftest.c >&5
configure:4424: $? = 0
configure:4472: result: yes
configure:4475: checking for C compiler default output file name
configure:4477: result: a.out
configure:4483: checking for suffix of executables
configure:4490: gcc -o conftest conftest.c >&5
configure:4494: $? = 0
configure:4516: result:
configure:4538: checking whether we are cross compiling
configure:4546: gcc -o conftest conftest.c >&5
configure:4550: $? = 0
configure:4557: ./conftest
configure:4561: $? = 0
configure:4576: result: no
configure:4581: checking for suffix of object files
configure:4603: gcc -c conftest.c >&5
configure:4607: $? = 0
configure:4628: result: o
configure:4632: checking whether we are using the GNU C compiler
configure:4651: gcc -c conftest.c >&5
configure:4651: $? = 0
configure:4660: result: yes
configure:4669: checking whether gcc accepts -g
configure:4689: gcc -c -g conftest.c >&5
configure:4689: $? = 0
configure:4730: result: yes
configure:4747: checking for gcc option to accept ISO C89
configure:4810: gcc -c conftest.c >&5
configure:4810: $? = 0
configure:4823: result: none needed
configure:4848: checking whether gcc understands -c and -o together
configure:4870: gcc -c conftest.c -o conftest2.o
configure:4873: $? = 0
configure:4870: gcc -c conftest.c -o conftest2.o
configure:4873: $? = 0
configure:4885: result: yes
configure:4913: checking for style of include used by make
configure:4941: result: GNU
configure:4967: checking dependency style of gcc
configure:5078: result: gcc3
configure:5100: checking if unsupported combinations of configure options are allowed
configure:5110: result: no
configure:5125: checking if Fortran interface enabled
configure:5143: checking if Fortran 2003 interface enabled
configure:5241: checking for gfortran
configure:5257: found /usr/bin/gfortran
configure:5268: result: gfortran
configure:5294: checking for Fortran compiler version
configure:5303: gfortran --version >&5
GNU Fortran (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5314: $? = 0
configure:5303: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:5314: $? = 0
configure:5303: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5314: $? = 1
configure:5303: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:5314: $? = 1
configure:5323: checking whether we are using the GNU Fortran compiler
configure:5336: gfortran -c conftest.F >&5
configure:5336: $? = 0
configure:5345: result: yes
configure:5351: checking whether gfortran accepts -g
configure:5362: gfortran -c -g conftest.f >&5
configure:5362: $? = 0
configure:5370: result: yes
configure:5403: checking for Fortran flag to compile .f90 files
configure:5423: gfortran -c conftest.f90 >&5
configure:5423: $? = 0
configure:5432: result: none
configure:5567: checking for Fortran compiler version
configure:5576: gfortran --version >&5
GNU Fortran (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5587: $? = 0
configure:5576: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:5587: $? = 0
configure:5576: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5587: $? = 1
configure:5576: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:5587: $? = 1
configure:5596: checking whether we are using the GNU Fortran compiler
configure:5618: result: yes
configure:5624: checking whether gfortran accepts -g
configure:5643: result: yes
configure:5672: checking what gfortran does with modules
configure:5725: checking how gfortran finds modules
configure:5737: gfortran -Iconftestdir -c conftest.f90 1>&5
configure:5740: $? = 0
configure:5778: checking how to get verbose linking output from gfortran
configure:5788: gfortran -c -I. conftest.f90 >&5
configure:5788: $? = 0
configure:5806: gfortran -o conftest -I. -v conftest.f90
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Thread model: posix
gcc version 5.1.0 (GCC)
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I . -quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/cc5B0Jtw.s
GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I . --64 -o /tmp/ccK4bt2n.o /tmp/cc5B0Jtw.s
GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.0
Reading specs from /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccWKKPBf.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. /tmp/ccK4bt2n.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
configure:5889: result: -v
configure:5891: checking for Fortran libraries of gfortran
configure:5914: gfortran -o conftest -I. -v conftest.f90
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Thread model: posix
gcc version 5.1.0 (GCC)
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I . -quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/ccyHgq0y.s
GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I . --64 -o /tmp/cci78AFq.o /tmp/ccyHgq0y.s
GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.0
Reading specs from /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwIrIli.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. /tmp/cci78AFq.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
configure:6110: result: -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath
configure:6126: checking for dummy main to link with Fortran libraries
configure:6160: gcc -o conftest conftest.c -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6160: $? = 0
configure:6205: result: none
configure:6237: checking for Fortran name-mangling scheme
configure:6250: gfortran -c -I. conftest.f90 >&5
configure:6250: $? = 0
configure:6291: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
/tmp/ccY01qfA.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `foobar'
collect2: error: ld returned 1 exit status
configure:6291: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> /* end confdefs.h. */
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char foobar ();
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return foobar ();
> ;
> return 0;
> }
configure:6291: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6291: $? = 0
configure:6349: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6349: $? = 0
configure:6391: result: lower case, underscore, no extra underscore
configure:6460: checking if Fortran compiler supports intrinsic SIZEOF
configure:6469: gfortran -o conftest -I. conftest.f90 >&5
configure:6469: $? = 0
configure:6470: result: yes
configure:6484: checking if Fortran compiler supports intrinsic C_SIZEOF
configure:6496: gfortran -o conftest -I. conftest.f90 >&5
configure:6496: $? = 0
configure:6497: result: yes
configure:6511: checking if Fortran compiler supports intrinsic STORAGE_SIZE
configure:6522: gfortran -o conftest -I. conftest.f90 >&5
configure:6522: $? = 0
configure:6523: result: yes
configure:6539: checking if Fortran default REAL is DOUBLE PRECISION
configure:6566: gfortran -c -I. conftest.f90 >&5
configure:6566: $? = 0
configure:6567: result: no
configure:6582: checking if Fortran compiler version compatible with Fortran 2003 HDF
configure:6601: gfortran -o conftest -I. conftest.f90 >&5
configure:6601: $? = 0
configure:6602: result: yes
configure:6736: checking for g++
configure:6752: found /usr/bin/g++
configure:6763: result: g++
configure:6790: checking for C++ compiler version
configure:6799: g++ --version >&5
g++ (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6810: $? = 0
configure:6799: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:6810: $? = 0
configure:6799: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:6810: $? = 1
configure:6799: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:6810: $? = 1
configure:6814: checking whether we are using the GNU C++ compiler
configure:6841: g++ -c conftest.cpp >&5
configure:6841: $? = 0
configure:6850: result: yes
configure:6859: checking whether g++ accepts -g
configure:6887: g++ -c -g conftest.cpp >&5
configure:6887: $? = 0
configure:6944: result: yes
configure:6969: checking dependency style of g++
configure:7080: result: gcc3
configure:7100: checking how to run the C++ preprocessor
configure:7127: g++ -E conftest.cpp
configure:7127: $? = 0
configure:7141: g++ -E conftest.cpp
conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7141: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:7166: result: g++ -E
configure:7186: g++ -E conftest.cpp
configure:7186: $? = 0
configure:7200: g++ -E conftest.cpp
conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7200: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:7229: checking if c++ interface enabled
configure:7388: result: no
configure:7409: checking if high level library is enabled
configure:7446: checking for perl
configure:7462: found /usr/bin/perl
configure:7473: result: perl
configure:7496: checking for ar
configure:7512: found /usr/bin/ar
configure:7523: result: ar
configure:7542: checking whether make sets $(MAKE)
configure:7564: result: yes
configure:7581: checking for tr
configure:7599: found /usr/bin/tr
configure:7611: result: /usr/bin/tr
configure:7630: checking if srcdir= and time commands work together
configure:7641: result: no
configure:7693: checking if shared Fortran libraries are supported
configure:7727: result: yes
configure:7812: checking how to print strings
configure:7839: result: printf
configure:7860: checking for a sed that does not truncate output
configure:7924: result: /usr/bin/sed
configure:7942: checking for grep that handles long lines and -e
configure:8000: result: /usr/bin/grep
configure:8005: checking for egrep
configure:8067: result: /usr/bin/grep -E
configure:8072: checking for fgrep
configure:8134: result: /usr/bin/grep -F
configure:8169: checking for ld used by gcc
configure:8236: result: /usr/bin/ld
configure:8243: checking if the linker (/usr/bin/ld) is GNU ld
configure:8258: result: yes
configure:8270: checking for BSD- or MS-compatible name lister (nm)
configure:8319: result: /usr/bin/nm -B
configure:8449: checking the name lister (/usr/bin/nm -B) interface
configure:8456: gcc -c conftest.c >&5
configure:8459: /usr/bin/nm -B "conftest.o"
configure:8462: output
0000000000000000 B some_variable
configure:8469: result: BSD nm
configure:8472: checking whether ln -s works
configure:8476: result: yes
configure:8484: checking the maximum length of command line arguments
configure:8614: result: 1572864
configure:8631: checking whether the shell understands some XSI constructs
configure:8641: result: yes
configure:8645: checking whether the shell understands "+="
configure:8651: result: yes
configure:8686: checking how to convert x86_64-pc-none file names to x86_64-pc-none format
configure:8726: result: func_convert_file_noop
configure:8733: checking how to convert x86_64-pc-none file names to toolchain format
configure:8753: result: func_convert_file_noop
configure:8760: checking for /usr/bin/ld option to reload object files
configure:8767: result: -r
configure:8841: checking for objdump
configure:8857: found /usr/bin/objdump
configure:8868: result: objdump
configure:8900: checking how to recognize dependent libraries
configure:9102: result: unknown
configure:9187: checking for dlltool
configure:9217: result: no
configure:9247: checking how to associate runtime and link libraries
configure:9274: result: printf %s\n
configure:9398: checking for archiver @FILE support
configure:9423: gcc -c conftest.c >&5
configure:9423: $? = 0
configure:9426: ar cru libconftest.a @conftest.lst >&5
configure:9429: $? = 0
configure:9434: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:9437: $? = 1
configure:9449: result: @
configure:9507: checking for strip
configure:9523: found /usr/bin/strip
configure:9534: result: strip
configure:9606: checking for ranlib
configure:9622: found /usr/bin/ranlib
configure:9633: result: ranlib
configure:9735: checking command to parse /usr/bin/nm -B output from gcc object
configure:9855: gcc -c conftest.c >&5
configure:9858: $? = 0
configure:9862: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:9865: $? = 0
configure:9931: gcc -o conftest conftest.c conftstm.o >&5
configure:9934: $? = 0
configure:9972: result: ok
configure:10009: checking for sysroot
configure:10039: result: no
configure:10303: checking for mt
configure:10333: result: no
configure:10353: checking if : is a manifest tool
configure:10359: : '-?'
configure:10367: result: no
configure:11017: checking how to run the C preprocessor
configure:11048: gcc -E conftest.c
configure:11048: $? = 0
configure:11062: gcc -E conftest.c
conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:11062: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:11087: result: gcc -E
configure:11107: gcc -E conftest.c
configure:11107: $? = 0
configure:11121: gcc -E conftest.c
conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:11121: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:11150: checking for ANSI C header files
configure:11178: gcc -c conftest.c >&5
configure:11178: $? = 0
configure:11251: gcc -o conftest conftest.c >&5
configure:11251: $? = 0
configure:11251: ./conftest
configure:11251: $? = 0
configure:11262: result: yes
configure:11275: checking for sys/types.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for sys/stat.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for stdlib.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for string.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for memory.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for strings.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for inttypes.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for stdint.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for unistd.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11289: checking for dlfcn.h
configure:11289: gcc -c conftest.c >&5
configure:11289: $? = 0
configure:11289: result: yes
configure:11504: checking for objdir
configure:11519: result: .libs
configure:11786: checking if gcc supports -fno-rtti -fno-exceptions
configure:11804: gcc -c -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:11808: $? = 0
configure:11821: result: no
configure:12148: checking for gcc option to produce PIC
configure:12155: result: -fPIC -DPIC
configure:12163: checking if gcc PIC flag -fPIC -DPIC works
configure:12181: gcc -c -fPIC -DPIC -DPIC conftest.c >&5
configure:12185: $? = 0
configure:12198: result: yes
configure:12227: checking if gcc static flag -static works
configure:12255: result: yes
configure:12270: checking if gcc supports -c -o file.o
configure:12291: gcc -c -o out/conftest2.o conftest.c >&5
configure:12295: $? = 0
configure:12317: result: yes
configure:12325: checking if gcc supports -c -o file.o
configure:12372: result: yes
configure:12405: checking whether the gcc linker (/usr/bin/ld) supports shared libraries
configure:13574: result: yes
configure:13611: checking whether -lc should be explicitly linked in
configure:13619: gcc -c conftest.c >&5
configure:13622: $? = 0
configure:13637: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
configure:13640: $? = 0
configure:13654: result: no
configure:13814: checking dynamic linker characteristics
configure:14555: result: no
configure:14662: checking how to hardcode library paths into programs
configure:14687: result: immediate
configure:14789: checking for shl_load
configure:14789: gcc -o conftest conftest.c >&5
/tmp/cciXRyKJ.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `shl_load'
collect2: error: ld returned 1 exit status
configure:14789: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
> /* Define shl_load to an innocuous variant, in case <limits.h> declares shl_load.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define shl_load innocuous_shl_load
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char shl_load (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef shl_load
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char shl_load ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_shl_load || defined __stub___shl_load
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return shl_load ();
> ;
> return 0;
> }
configure:14789: result: no
configure:14793: checking for shl_load in -ldld
configure:14826: gcc -o conftest conftest.c -ldld >&5
/usr/bin/ld: cannot find -ldld
collect2: error: ld returned 1 exit status
configure:14826: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char shl_load ();
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return shl_load ();
> ;
> return 0;
> }
configure:14835: result: no
configure:14840: checking for dlopen
configure:14840: gcc -o conftest conftest.c >&5
/tmp/ccU8m5gO.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `dlopen'
collect2: error: ld returned 1 exit status
configure:14840: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
> /* Define dlopen to an innocuous variant, in case <limits.h> declares dlopen.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define dlopen innocuous_dlopen
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char dlopen (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef dlopen
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char dlopen ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_dlopen || defined __stub___dlopen
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return dlopen ();
> ;
> return 0;
> }
configure:14840: result: no
configure:14844: checking for dlopen in -ldl
configure:14877: gcc -o conftest conftest.c -ldl >&5
configure:14877: $? = 0
configure:14886: result: yes
configure:15021: checking whether a program can dlopen itself
configure:15101: gcc -o conftest -DHAVE_DLFCN_H -Wl,--export-dynamic conftest.c -ldl >&5
configure:15104: $? = 0
configure:15122: result: yes
configure:15127: checking whether a statically linked program can dlopen itself
configure:15207: gcc -o conftest -DHAVE_DLFCN_H -Wl,--export-dynamic -static conftest.c -ldl >&5
/tmp/ccRkAuGS.o: In function `main':
conftest.c:(.text+0x1e): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/usr/bin/ld: dynamic STT_GNU_IFUNC symbol `strcmp' with pointer equality in `/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libc.a(strcmp.o)' can not be used when making an executable; recompile with -fPIE and relink with -pie
collect2: error: ld returned 1 exit status
configure:15210: $? = 1
configure:15228: result: no
configure:15267: checking whether stripping libraries is possible
configure:15272: result: yes
configure:15307: checking if libtool supports shared libraries
configure:15309: result: no
configure:15312: checking whether to build shared libraries
configure:15333: result: no
configure:15336: checking whether to build static libraries
configure:15340: result: yes
configure:18681: checking if libtool supports shared libraries
configure:18683: result: no
configure:18686: checking whether to build shared libraries
configure:18706: result: no
configure:18709: checking whether to build static libraries
configure:18713: result: yes
configure:18747: gfortran -c -I. conftest.f90 >&5
configure:18750: $? = 0
configure:19179: checking for gfortran option to produce PIC
configure:19186: result: -fPIC
configure:19194: checking if gfortran PIC flag -fPIC works
configure:19212: gfortran -c -I. -fPIC conftest.f90 >&5
configure:19216: $? = 0
configure:19229: result: yes
configure:19252: checking if gfortran static flag -static works
configure:19280: result: no
configure:19292: checking if gfortran supports -c -o file.o
configure:19313: gfortran -c -I. -o out/conftest2.o conftest.f90 >&5
configure:19317: $? = 0
configure:19339: result: yes
configure:19344: checking if gfortran supports -c -o file.o
configure:19391: result: yes
configure:19421: checking whether the gfortran linker (/usr/bin/ld) supports shared libraries
configure:20524: result: yes
configure:20665: checking dynamic linker characteristics
configure:21326: result: no
configure:21379: checking how to hardcode library paths into programs
configure:21404: result: immediate
configure:21462: checking if we should install only statically linked executables
configure:21507: checking if -Wl,-rpath should be used to link shared libs in nondefault directories
configure:21525: result: yes
configure:21544: checking whether make will build with undefined variables
configure:21553: result: yes
configure:21568: checking for production mode
configure:21579: result: production
configure:21618: checking for ceil in -lm
configure:21651: gcc -o conftest conftest.c -lm >&5
conftest.c:33:6: warning: conflicting types for built-in function 'ceil'
char ceil ();
      ^
configure:21651: $? = 0
configure:21660: result: yes
configure:21671: checking for dlopen in -ldl
configure:21713: result: yes
configure:21838: checking for ANSI C header files
configure:21950: result: yes
configure:21958: checking whether time.h and sys/time.h may both be included
configure:21986: gcc -c conftest.c >&5
configure:21986: $? = 0
configure:21993: result: yes
configure:22006: checking sys/resource.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/resource.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/resource.h
configure:22006: result: yes
configure:22006: checking sys/time.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/time.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/time.h
configure:22006: result: yes
configure:22006: checking for unistd.h
configure:22006: result: yes
configure:22006: checking sys/ioctl.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/ioctl.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/ioctl.h
configure:22006: result: yes
configure:22006: checking for sys/stat.h
configure:22006: result: yes
configure:22019: checking sys/socket.h usability
configure:22019: gcc -c conftest.c >&5
configure:22019: $? = 0
configure:22019: result: yes
configure:22019: checking sys/socket.h presence
configure:22019: gcc -E conftest.c
configure:22019: $? = 0
configure:22019: result: yes
configure:22019: checking for sys/socket.h
configure:22019: result: yes
configure:22019: checking for sys/types.h
configure:22019: result: yes
configure:22032: checking stddef.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking stddef.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for stddef.h
configure:22032: result: yes
configure:22032: checking setjmp.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking setjmp.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for setjmp.h
configure:22032: result: yes
configure:22032: checking features.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking features.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for features.h
configure:22032: result: yes
configure:22044: checking dirent.h usability
configure:22044: gcc -c conftest.c >&5
configure:22044: $? = 0
configure:22044: result: yes
configure:22044: checking dirent.h presence
configure:22044: gcc -E conftest.c
configure:22044: $? = 0
configure:22044: result: yes
configure:22044: checking for dirent.h
configure:22044: result: yes
configure:22056: checking for stdint.h
configure:22056: result: yes
configure:22070: checking mach/mach_time.h usability
configure:22070: gcc -c conftest.c >&5
conftest.c:75:28: fatal error: mach/mach_time.h: No such file or directory
compilation terminated.
configure:22070: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <mach/mach_time.h>
configure:22070: result: no
configure:22070: checking mach/mach_time.h presence
configure:22070: gcc -E conftest.c
conftest.c:42:28: fatal error: mach/mach_time.h: No such file or directory
compilation terminated.
configure:22070: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <mach/mach_time.h>
configure:22070: result: no
configure:22070: checking for mach/mach_time.h
configure:22070: result: no
configure:22173: checking io.h usability
configure:22173: gcc -c conftest.c >&5
conftest.c:75:16: fatal error: io.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <io.h>
configure:22173: result: no
configure:22173: checking io.h presence
configure:22173: gcc -E conftest.c
conftest.c:42:16: fatal error: io.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <io.h>
configure:22173: result: no
configure:22173: checking for io.h
configure:22173: result: no
configure:22173: checking winsock2.h usability
configure:22173: gcc -c conftest.c >&5
conftest.c:75:22: fatal error: winsock2.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <winsock2.h>
configure:22173: result: no
configure:22173: checking winsock2.h presence
configure:22173: gcc -E conftest.c
conftest.c:42:22: fatal error: winsock2.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <winsock2.h>
configure:22173: result: no
configure:22173: checking for winsock2.h
configure:22173: result: no
configure:22173: checking sys/timeb.h usability
configure:22173: gcc -c conftest.c >&5
configure:22173: $? = 0
configure:22173: result: yes
configure:22173: checking sys/timeb.h presence
configure:22173: gcc -E conftest.c
configure:22173: $? = 0
configure:22173: result: yes
configure:22173: checking for sys/timeb.h
configure:22173: result: yes
configure:22270: checking for _FILE_OFFSET_BITS value needed for large files
configure:22303: gcc -c conftest.c >&5
configure:22303: $? = 0
configure:22343: result: no
configure:22522: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:55:1: error: unknown type name 'off64_t'
off64_t n = 0;
^
configure:22522: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> /* end confdefs.h. */
> #include <sys/types.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> off64_t n = 0;
> ;
> return 0;
> }
configure:22536: result: skipping test for lseek64(), fseeko64 , ftello64, ftruncate64() because off64_t is not defined
configure:22543: checking for fseeko
configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
configure:22543: $? = 0
configure:22543: result: yes
configure:22543: checking for ftello
configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
configure:22543: $? = 0
configure:22543: result: yes
configure:22573: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:59:15: error: storage size of 'sb' isn't known
struct stat64 sb;
               ^
configure:22573: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
>
> #include <sys/types.h>
> #include <sys/stat.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct stat64 sb;
> ;
> return 0;
> }
configure:22587: result: skipping test for stat64() and fstat64()
configure:22595: checking for off_t
configure:22595: gcc -c conftest.c >&5
configure:22595: $? = 0
configure:22595: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:20: error: expected expression before ')' token
if (sizeof ((off_t)))
                    ^
configure:22595: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((off_t)))
> return 0;
> ;
> return 0;
> }
configure:22595: result: yes
configure:22606: checking for size_t
configure:22606: gcc -c conftest.c >&5
configure:22606: $? = 0
configure:22606: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:21: error: expected expression before ')' token
if (sizeof ((size_t)))
                     ^
configure:22606: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((size_t)))
> return 0;
> ;
> return 0;
> }
configure:22606: result: yes
configure:22617: checking for ssize_t
configure:22617: gcc -c conftest.c >&5
configure:22617: $? = 0
configure:22617: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:22: error: expected expression before ')' token
if (sizeof ((ssize_t)))
                      ^
configure:22617: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((ssize_t)))
> return 0;
> ;
> return 0;
> }
configure:22617: result: yes
configure:22628: checking for ptrdiff_t
configure:22628: gcc -c conftest.c >&5
configure:22628: $? = 0
configure:22628: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:24: error: expected expression before ')' token
if (sizeof ((ptrdiff_t)))
                        ^
configure:22628: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((ptrdiff_t)))
> return 0;
> ;
> return 0;
> }
configure:22628: result: yes
configure:22639: checking whether byte ordering is bigendian
configure:22654: gcc -c conftest.c >&5
conftest.c:46:9: error: unknown type name 'not'
         not a universal capable compiler
         ^
conftest.c:46:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal'
         not a universal capable compiler
               ^
conftest.c:46:15: error: unknown type name 'universal'
configure:22654: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #ifndef __APPLE_CC__
> not a universal capable compiler
> #endif
> typedef int dummy;
>
configure:22707: gcc -c conftest.c >&5
configure:22707: $? = 0
configure:22733: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:60:4: error: unknown type name 'not'
    not big endian
    ^
conftest.c:60:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian'
    not big endian
            ^
configure:22733: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <sys/types.h>
> #include <sys/param.h>
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> #if BYTE_ORDER != BIG_ENDIAN
> not big endian
> #endif
>
> ;
> return 0;
> }
configure:22893: result: no
configure:22915: checking size of char
configure:22920: gcc -o conftest conftest.c -ldl -lm >&5
configure:22920: $? = 0
configure:22920: ./conftest
configure:22920: $? = 0
configure:22934: result: 1
configure:22948: checking size of short
configure:22953: gcc -o conftest conftest.c -ldl -lm >&5
configure:22953: $? = 0
configure:22953: ./conftest
configure:22953: $? = 0
configure:22967: result: 2
configure:22981: checking size of int
configure:22986: gcc -o conftest conftest.c -ldl -lm >&5
configure:22986: $? = 0
configure:22986: ./conftest
configure:22986: $? = 0
configure:23000: result: 4
configure:23014: checking size of unsigned
configure:23019: gcc -o conftest conftest.c -ldl -lm >&5
configure:23019: $? = 0
configure:23019: ./conftest
configure:23019: $? = 0
configure:23033: result: 4
configure:23047: checking size of long
configure:23052: gcc -o conftest conftest.c -ldl -lm >&5
configure:23052: $? = 0
configure:23052: ./conftest
configure:23052: $? = 0
configure:23066: result: 8
configure:23080: checking size of long long
configure:23085: gcc -o conftest conftest.c -ldl -lm >&5
configure:23085: $? = 0
configure:23085: ./conftest
configure:23085: $? = 0
configure:23099: result: 8
configure:23113: checking size of __int64
configure:23118: gcc -o conftest conftest.c -ldl -lm >&5
conftest.c: In function 'longval':
conftest.c:84:57: error: '__int64' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (__int64)); }
                                                         ^
conftest.c:84:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:85:67: error: '__int64' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
                                                                   ^
conftest.c: In function 'main':
conftest.c:103:28: error: '__int64' undeclared (first use in this function)
   if (((long int) (sizeof (__int64))) < 0)
                            ^
configure:23118: $? = 1
configure: program exited with status 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> static long int longval () { return (long int) (sizeof (__int64)); }
> static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
> #include <stdio.h>
> #include <stdlib.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
>
> FILE *f = fopen ("conftest.val", "w");
> if (! f)
> return 1;
> if (((long int) (sizeof (__int64))) < 0)
> {
> long int i = longval ();
> if (i != ((long int) (sizeof (__int64))))
> return 1;
> fprintf (f, "%ld", i);
> }
> else
> {
> unsigned long int i = ulongval ();
> if (i != ((long int) (sizeof (__int64))))
> return 1;
> fprintf (f, "%lu", i);
> }
> /* Do not output a trailing newline, as this causes \r\n confusion
> on some platforms. */
> return ferror (f) || fclose (f) != 0;
>
> ;
> return 0;
> }
configure:23132: result: 0
configure:23146: checking size of float
configure:23151: gcc -o conftest conftest.c -ldl -lm >&5
configure:23151: $? = 0
configure:23151: ./conftest
configure:23151: $? = 0
configure:23165: result: 4
configure:23179: checking size of double
configure:23184: gcc -o conftest conftest.c -ldl -lm >&5
configure:23184: $? = 0
configure:23184: ./conftest
configure:23184: $? = 0
configure:23198: result: 8
configure:23212: checking size of long double
configure:23217: gcc -o conftest conftest.c -ldl -lm >&5
configure:23217: $? = 0
configure:23217: ./conftest
configure:23217: $? = 0
configure:23231: result: 16
configure:23344: checking size of int8_t
configure:23349: gcc -o conftest conftest.c -ldl -lm >&5
configure:23349: $? = 0
configure:23349: ./conftest
configure:23349: $? = 0
configure:23363: result: 1
configure:23377: checking size of uint8_t
configure:23382: gcc -o conftest conftest.c -ldl -lm >&5
configure:23382: $? = 0
configure:23382: ./conftest
configure:23382: $? = 0
configure:23396: result: 1
configure:23410: checking size of int_least8_t
configure:23415: gcc -o conftest conftest.c -ldl -lm >&5
configure:23415: $? = 0
configure:23415: ./conftest
configure:23415: $? = 0
configure:23429: result: 1
configure:23443: checking size of uint_least8_t
configure:23448: gcc -o conftest conftest.c -ldl -lm >&5
configure:23448: $? = 0
configure:23448: ./conftest
configure:23448: $? = 0
configure:23462: result: 1
configure:23476: checking size of int_fast8_t
configure:23481: gcc -o conftest conftest.c -ldl -lm >&5
configure:23481: $? = 0
configure:23481: ./conftest
configure:23481: $? = 0
configure:23495: result: 1
configure:23509: checking size of uint_fast8_t
configure:23514: gcc -o conftest conftest.c -ldl -lm >&5
configure:23514: $? = 0
configure:23514: ./conftest
configure:23514: $? = 0
configure:23528: result: 1
configure:23543: checking size of int16_t
configure:23548: gcc -o conftest conftest.c -ldl -lm >&5
configure:23548: $? = 0
configure:23548: ./conftest
configure:23548: $? = 0
configure:23562: result: 2
configure:23576: checking size of uint16_t
configure:23581: gcc -o conftest conftest.c -ldl -lm >&5
configure:23581: $? = 0
configure:23581: ./conftest
configure:23581: $? = 0
configure:23595: result: 2
configure:23609: checking size of int_least16_t
configure:23614: gcc -o conftest conftest.c -ldl -lm >&5
configure:23614: $? = 0
configure:23614: ./conftest
configure:23614: $? = 0
configure:23628: result: 2
configure:23642: checking size of uint_least16_t
configure:23647: gcc -o conftest conftest.c -ldl -lm >&5
configure:23647: $? = 0
configure:23647: ./conftest
configure:23647: $? = 0
configure:23661: result: 2
configure:23675: checking size of int_fast16_t
configure:23680: gcc -o conftest conftest.c -ldl -lm >&5
configure:23680: $? = 0
configure:23680: ./conftest
configure:23680: $? = 0
configure:23694: result: 8
configure:23708: checking size of uint_fast16_t
configure:23713: gcc -o conftest conftest.c -ldl -lm >&5
configure:23713: $? = 0
configure:23713: ./conftest
configure:23713: $? = 0
configure:23727: result: 8
configure:23742: checking size of int32_t
configure:23747: gcc -o conftest conftest.c -ldl -lm >&5
configure:23747: $? = 0
configure:23747: ./conftest
configure:23747: $? = 0
configure:23761: result: 4
configure:23775: checking size of uint32_t
configure:23780: gcc -o conftest conftest.c -ldl -lm >&5
configure:23780: $? = 0
configure:23780: ./conftest
configure:23780: $? = 0
configure:23794: result: 4
configure:23808: checking size of int_least32_t
configure:23813: gcc -o conftest conftest.c -ldl -lm >&5
configure:23813: $? = 0
configure:23813: ./conftest
configure:23813: $? = 0
configure:23827: result: 4
configure:23841: checking size of uint_least32_t
configure:23846: gcc -o conftest conftest.c -ldl -lm >&5
configure:23846: $? = 0
configure:23846: ./conftest
configure:23846: $? = 0
configure:23860: result: 4
configure:23874: checking size of int_fast32_t
configure:23879: gcc -o conftest conftest.c -ldl -lm >&5
configure:23879: $? = 0
configure:23879: ./conftest
configure:23879: $? = 0
configure:23893: result: 8
configure:23907: checking size of uint_fast32_t
configure:23912: gcc -o conftest conftest.c -ldl -lm >&5
configure:23912: $? = 0
configure:23912: ./conftest
configure:23912: $? = 0
configure:23926: result: 8
configure:23941: checking size of int64_t
configure:23946: gcc -o conftest conftest.c -ldl -lm >&5
configure:23946: $? = 0
configure:23946: ./conftest
configure:23946: $? = 0
configure:23960: result: 8
configure:23974: checking size of uint64_t
configure:23979: gcc -o conftest conftest.c -ldl -lm >&5
configure:23979: $? = 0
configure:23979: ./conftest
configure:23979: $? = 0
configure:23993: result: 8
configure:24007: checking size of int_least64_t
configure:24012: gcc -o conftest conftest.c -ldl -lm >&5
configure:24012: $? = 0
configure:24012: ./conftest
configure:24012: $? = 0
configure:24026: result: 8
configure:24040: checking size of uint_least64_t
configure:24045: gcc -o conftest conftest.c -ldl -lm >&5
configure:24045: $? = 0
configure:24045: ./conftest
configure:24045: $? = 0
configure:24059: result: 8
configure:24073: checking size of int_fast64_t
configure:24078: gcc -o conftest conftest.c -ldl -lm >&5
configure:24078: $? = 0
configure:24078: ./conftest
configure:24078: $? = 0
configure:24092: result: 8
configure:24106: checking size of uint_fast64_t
configure:24111: gcc -o conftest conftest.c -ldl -lm >&5
configure:24111: $? = 0
configure:24111: ./conftest
configure:24111: $? = 0
configure:24125: result: 8
configure:24140: checking size of size_t
configure:24145: gcc -o conftest conftest.c -ldl -lm >&5
configure:24145: $? = 0
configure:24145: ./conftest
configure:24145: $? = 0
configure:24159: result: 8
configure:24173: checking size of ssize_t
configure:24178: gcc -o conftest conftest.c -ldl -lm >&5
configure:24178: $? = 0
configure:24178: ./conftest
configure:24178: $? = 0
configure:24192: result: 8
configure:24206: checking size of ptrdiff_t
configure:24211: gcc -o conftest conftest.c -ldl -lm >&5
configure:24211: $? = 0
configure:24211: ./conftest
configure:24211: $? = 0
configure:24225: result: 8
configure:24243: checking size of off_t
configure:24248: gcc -o conftest conftest.c -ldl -lm >&5
configure:24248: $? = 0
configure:24248: ./conftest
configure:24248: $? = 0
configure:24262: result: 8
configure:24276: checking size of off64_t
configure:24281: gcc -o conftest conftest.c -ldl -lm >&5
conftest.c: In function 'longval':
conftest.c:119:57: error: 'off64_t' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (off64_t)); }
                                                         ^
conftest.c:119:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:120:67: error: 'off64_t' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (off64_t)); }
                                                                   ^
conftest.c: In function 'main':
conftest.c:138:28: error: 'off64_t' undeclared (first use in this function)
   if (((long int) (sizeof (off64_t))) < 0)
                            ^
configure:24281: $? = 1
configure: program exited with status 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> static long int longval () { return (long int) (sizeof (off64_t)); }
> static unsigned long int ulongval () { return (long int) (sizeof (off64_t)); }
> #include <stdio.h>
> #include <stdlib.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
>
> FILE *f = fopen ("conftest.val", "w");
> if (! f)
> return 1;
> if (((long int) (sizeof (off64_t))) < 0)
> {
> long int i = longval ();
> if (i != ((long int) (sizeof (off64_t))))
> return 1;
> fprintf (f, "%ld", i);
> }
> else
> {
> unsigned long int i = ulongval ();
> if (i != ((long int) (sizeof (off64_t))))
> return 1;
> fprintf (f, "%lu", i);
> }
> /* Do not output a trailing newline, as this causes \r\n confusion
> on some platforms. */
> return ferror (f) || fclose (f) != 0;
>
> ;
> return 0;
> }
configure:24295: result: 0
configure:24396: checking if dev_t is scalar
configure:24421: gcc -c conftest.c >&5
configure:24421: $? = 0
configure:24425: result: yes
configure:24541: checking for dmalloc library
configure:24543: result: suppressed
configure:24791: checking zlib.h usability
configure:24791: gcc -c -I/opt/zlib/include conftest.c >&5
configure:24791: $? = 0
configure:24791: result: yes
configure:24791: checking zlib.h presence
configure:24791: gcc -E -I/opt/zlib/include conftest.c
configure:24791: $? = 0
configure:24791: result: yes
configure:24791: checking for zlib.h
configure:24791: result: yes
configure:24810: checking for compress2 in -lz
configure:24843: gcc -o conftest -I/opt/zlib/include -L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
configure:24843: $? = 0
configure:24852: result: yes
configure:24872: checking for compress2
configure:24872: gcc -o conftest -I/opt/zlib/include -L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
configure:24872: $? = 0
configure:24872: result: yes
configure:25023: checking szlib.h usability
configure:25023: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25023: $? = 0
configure:25023: result: yes
configure:25023: checking szlib.h presence
configure:25023: gcc -E -I/opt/zlib/include -I/opt/szip/include conftest.c
configure:25023: $? = 0
configure:25023: result: yes
configure:25023: checking for szlib.h
configure:25023: result: yes
configure:25042: checking for SZ_BufftoBuffCompress in -lsz
configure:25075: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25075: $? = 0
configure:25084: result: yes
configure:25107: checking for szlib encoder
configure:25145: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c: In function 'main':
conftest.c:100:17: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
                 exit(0);
                 ^
conftest.c:100:17: warning: incompatible implicit declaration of built-in function 'exit'
conftest.c:100:17: note: include '<stdlib.h>' or provide a declaration of 'exit'
conftest.c:102:17: warning: incompatible implicit declaration of built-in function 'exit'
                 exit(1);
                 ^
conftest.c:102:17: note: include '<stdlib.h>' or provide a declaration of 'exit'
configure:25145: $? = 0
configure:25145: ./conftest
configure:25145: $? = 0
configure:25163: result: yes
configure:25286: checking for thread safe support
configure:25313: result: no
configure:25611: checking whether CLOCK_MONOTONIC is declared
configure:25611: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25611: $? = 0
configure:25611: result: yes
configure:25626: checking for tm_gmtoff in struct tm
configure:25649: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25649: $? = 0
configure:25653: result: yes
configure:25662: checking for global timezone variable
configure:25692: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25692: $? = 0
configure:25696: result: yes
configure:25711: checking for st_blocks in struct stat
configure:25733: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25733: $? = 0
configure:25737: result: yes
configure:25751: checking for _getvideoconfig
configure:25751: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccsNnkS7.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_getvideoconfig'
collect2: error: ld returned 1 exit status
configure:25751: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define _getvideoconfig to an innocuous variant, in case <limits.h> declares _getvideoconfig.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define _getvideoconfig innocuous__getvideoconfig
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char _getvideoconfig (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef _getvideoconfig
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char _getvideoconfig ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub__getvideoconfig || defined __stub____getvideoconfig
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return _getvideoconfig ();
> ;
> return 0;
> }
configure:25751: result: no
configure:25751: checking for gettextinfo
configure:25751: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/cc4i6cWa.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `gettextinfo'
collect2: error: ld returned 1 exit status
configure:25751: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define gettextinfo to an innocuous variant, in case <limits.h> declares gettextinfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define gettextinfo innocuous_gettextinfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char gettextinfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef gettextinfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char gettextinfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_gettextinfo || defined __stub___gettextinfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return gettextinfo ();
> ;
> return 0;
> }
configure:25751: result: no
configure:25766: checking for GetConsoleScreenBufferInfo
configure:25766: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccSBzVLg.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `GetConsoleScreenBufferInfo'
collect2: error: ld returned 1 exit status
configure:25766: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define GetConsoleScreenBufferInfo to an innocuous variant, in case <limits.h> declares GetConsoleScreenBufferInfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define GetConsoleScreenBufferInfo innocuous_GetConsoleScreenBufferInfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char GetConsoleScreenBufferInfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef GetConsoleScreenBufferInfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char GetConsoleScreenBufferInfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_GetConsoleScreenBufferInfo || defined __stub___GetConsoleScreenBufferInfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return GetConsoleScreenBufferInfo ();
> ;
> return 0;
> }
configure:25766: result: no
configure:25780: checking for _scrsize
configure:25780: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/cciTXu0i.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_scrsize'
collect2: error: ld returned 1 exit status
configure:25780: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define _scrsize to an innocuous variant, in case <limits.h> declares _scrsize.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define _scrsize innocuous__scrsize
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char _scrsize (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef _scrsize
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char _scrsize ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub__scrsize || defined __stub____scrsize
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return _scrsize ();
> ;
> return 0;
> }
configure:25780: result: no
configure:25780: checking for ioctl
configure:25780: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25780: $? = 0
configure:25780: result: yes
configure:25790: checking for struct videoconfig
configure:25811: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:110:20: error: storage size of 'w' isn't known
struct videoconfig w; w.numtextcols=0;
                    ^
configure:25811: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> /* end confdefs.h. */
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct videoconfig w; w.numtextcols=0;
> ;
> return 0;
> }
configure:25818: result: no
configure:25823: checking for struct text_info
configure:25844: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:110:18: error: storage size of 'w' isn't known
struct text_info w; w.screenwidth=0;
                  ^
configure:25844: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> /* end confdefs.h. */
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct text_info w; w.screenwidth=0;
> ;
> return 0;
> }
configure:25851: result: no
configure:25856: checking for TIOCGWINSZ
configure:25877: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25877: $? = 0
configure:25881: result: yes
configure:25889: checking for TIOCGETD
configure:25910: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25910: $? = 0
configure:25914: result: yes
configure:25928: checking for library containing clock_gettime
configure:25967: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25967: $? = 0
configure:25984: result: none required
configure:25995: checking for alarm
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for clock_gettime
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for difftime
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for fork
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:126:6: warning: conflicting types for built-in function 'fork'
char fork ();
      ^
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for frexpf
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:127:6: warning: conflicting types for built-in function 'frexpf'
char frexpf ();
      ^
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for frexpl
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:128:6: warning: conflicting types for built-in function 'frexpl'
char frexpl ();
      ^
configure:25995: $? = 0
configure:25995: result: yes
configure:26007: checking for gethostname
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for getpwuid
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for getrusage
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for gettimeofday
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26019: checking for lstat
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for rand_r
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for random
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for setsysinfo
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccdLPp70.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `setsysinfo'
collect2: error: ld returned 1 exit status
configure:26019: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> /* end confdefs.h. */
> /* Define setsysinfo to an innocuous variant, in case <limits.h> declares setsysinfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define setsysinfo innocuous_setsysinfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char setsysinfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef setsysinfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char setsysinfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_setsysinfo || defined __stub___setsysinfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return setsysinfo ();
> ;
> return 0;
> }
configure:26019: result: no
configure:26031: checking for signal
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for longjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for setjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for siglongjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for sigsetjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccPMRaFg.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `sigsetjmp'
collect2: error: ld returned 1 exit status
configure:26031: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> #define HAVE_SIGNAL 1
> #define HAVE_LONGJMP 1
> #define HAVE_SETJMP 1
> #define HAVE_SIGLONGJMP 1
> /* end confdefs.h. */
> /* Define sigsetjmp to an innocuous variant, in case <limits.h> declares sigsetjmp.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define sigsetjmp innocuous_sigsetjmp
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char sigsetjmp (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef sigsetjmp
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char sigsetjmp ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_sigsetjmp || defined __stub___sigsetjmp
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return sigsetjmp ();
> ;
> return 0;
> }
configure:26031: result: no
configure:26031: checking for sigprocmask
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26043: checking for snprintf
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:141:6: warning: conflicting types for built-in function 'snprintf'
char snprintf ();
      ^
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for srandom
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for strdup
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:143:6: warning: conflicting types for built-in function 'strdup'
char strdup ();
      ^
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for symlink
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for system
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26055: checking for tmpfile
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for asprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for vasprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for vsnprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:149:6: warning: conflicting types for built-in function 'vsnprintf'
char vsnprintf ();
      ^
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for waitpid
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26068: checking for an ANSI C-conforming const
configure:26142: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26142: $? = 0
configure:26149: result: yes
configure:26157: checking for inline
configure:26173: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26173: $? = 0
configure:26181: result: inline
configure:26200: checking for __attribute__ extension
configure:26221: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26221: $? = 0
configure:26225: result: yes
configure:26233: checking for __func__ extension
configure:26254: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26254: $? = 0
configure:26258: result: yes
configure:26265: checking for __FUNCTION__ extension
configure:26286: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26286: $? = 0
configure:26290: result: yes
configure:26297: checking for C99 designated initialization support
configure:26326: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26326: $? = 0
configure:26330: result: yes
configure:26343: checking how to print long long
configure:26370: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26370: $? = 0
configure:26370: ./conftest
configure:26370: $? = 0
configure:26381: result: %ld and %lu
configure:26393: checking Threads support system scope
configure:26423: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26423: $? = 0
configure:26423: ./conftest
configure:26423: $? = 0
configure:26439: result: yes
configure:26450: checking for debug flags
configure:26483: result: none
configure:26503: checking whether function stack tracking is enabled
configure:26522: result: no
configure:26530: checking whether metadata trace file code is enabled
configure:26549: result: no
configure:26559: checking for API tracing
configure:26584: result: no
configure:26596: checking for instrumented library
configure:26623: result: no
configure:26634: checking whether to clear file buffers
configure:26645: result: yes
configure:26665: checking whether a memory checking tool will be used
configure:26684: result: no
configure:26803: checking for parallel support files
configure:26815: result: provided by compiler
configure:26820: checking whether a simple MPI-IO C program can be linked
configure:26842: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:135:17: fatal error: mpi.h: No such file or directory
compilation terminated.
configure:26842: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> #define HAVE_SIGNAL 1
> #define HAVE_LONGJMP 1
> #define HAVE_SETJMP 1
> #define HAVE_SIGLONGJMP 1
> #define HAVE_SIGPROCMASK 1
> #define HAVE_SNPRINTF 1
> #define HAVE_SRANDOM 1
> #define HAVE_STRDUP 1
> #define HAVE_SYMLINK 1
> #define HAVE_SYSTEM 1
> #define HAVE_TMPFILE 1
> #define HAVE_ASPRINTF 1
> #define HAVE_VASPRINTF 1
> #define HAVE_VSNPRINTF 1
> #define HAVE_WAITPID 1
> #define HAVE_ATTRIBUTE 1
> #define HAVE_C99_FUNC 1
> #define HAVE_FUNCTION 1
> #define HAVE_C99_DESIGNATED_INITIALIZER 1
> #define PRINTF_LL_WIDTH "l"
> #define SYSTEM_SCOPE_THREADS 1
> #define CLEAR_MEMORY 1
> /* end confdefs.h. */
> #include <mpi.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> MPI_Init(0, (void *)0);
> MPI_File_open(0, (void *)0, 0, 0, (void *)0);
> ;
> return 0;
> }
configure:26846: result: no
configure:26848: error: unable to link a simple MPI-IO C program

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-none
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_dummy_main=none
ac_cv_fc_libs=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath'
ac_cv_fc_mangling='lower case, underscore, no extra underscore'
ac_cv_fc_srcext_f90=none
ac_cv_fortran_dummy_main=none
ac_cv_func_GetConsoleScreenBufferInfo=no
ac_cv_func__getvideoconfig=no
ac_cv_func__scrsize=no
ac_cv_func_alarm=yes
ac_cv_func_asprintf=yes
ac_cv_func_clock_gettime=yes
ac_cv_func_compress2=yes
ac_cv_func_difftime=yes
ac_cv_func_dlopen=no
ac_cv_func_fork=yes
ac_cv_func_frexpf=yes
ac_cv_func_frexpl=yes
ac_cv_func_fseeko=yes
ac_cv_func_ftello=yes
ac_cv_func_gethostname=yes
ac_cv_func_getpwuid=yes
ac_cv_func_getrusage=yes
ac_cv_func_gettextinfo=no
ac_cv_func_gettimeofday=yes
ac_cv_func_ioctl=yes
ac_cv_func_longjmp=yes
ac_cv_func_lstat=yes
ac_cv_func_rand_r=yes
ac_cv_func_random=yes
ac_cv_func_setjmp=yes
ac_cv_func_setsysinfo=no
ac_cv_func_shl_load=no
ac_cv_func_siglongjmp=yes
ac_cv_func_signal=yes
ac_cv_func_sigprocmask=yes
ac_cv_func_sigsetjmp=no
ac_cv_func_snprintf=yes
ac_cv_func_srandom=yes
ac_cv_func_strdup=yes
ac_cv_func_symlink=yes
ac_cv_func_system=yes
ac_cv_func_tmpfile=yes
ac_cv_func_vasprintf=yes
ac_cv_func_vsnprintf=yes
ac_cv_func_waitpid=yes
ac_cv_have_decl_CLOCK_MONOTONIC=yes
ac_cv_header_dirent_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_features_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_io_h=no
ac_cv_header_mach_mach_time_h=no
ac_cv_header_memory_h=yes
ac_cv_header_setjmp_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stddef_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_ioctl_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_socket_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_timeb_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_szlib_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_header_winsock2_h=no
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-pc-none
ac_cv_lib_dl_dlopen=yes
ac_cv_lib_dld_shl_load=no
ac_cv_lib_m_ceil=yes
ac_cv_lib_sz_SZ_BufftoBuffCompress=yes
ac_cv_lib_z_compress2=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_TR=/usr/bin/tr
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AR=ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_PERL=perl
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_fc_v=-v
ac_cv_prog_make_make_set=yes
ac_cv_search_clock_gettime='none required'
ac_cv_sizeof___int64=0
ac_cv_sizeof_char=1
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int16_t=2
ac_cv_sizeof_int32_t=4
ac_cv_sizeof_int64_t=8
ac_cv_sizeof_int8_t=1
ac_cv_sizeof_int=4
ac_cv_sizeof_int_fast16_t=8
ac_cv_sizeof_int_fast32_t=8
ac_cv_sizeof_int_fast64_t=8
ac_cv_sizeof_int_fast8_t=1
ac_cv_sizeof_int_least16_t=2
ac_cv_sizeof_int_least32_t=4
ac_cv_sizeof_int_least64_t=8
ac_cv_sizeof_int_least8_t=1
ac_cv_sizeof_long=8
ac_cv_sizeof_long_double=16
ac_cv_sizeof_long_long=8
ac_cv_sizeof_off64_t=0
ac_cv_sizeof_off_t=8
ac_cv_sizeof_ptrdiff_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=8
ac_cv_sizeof_ssize_t=8
ac_cv_sizeof_uint16_t=2
ac_cv_sizeof_uint32_t=4
ac_cv_sizeof_uint64_t=8
ac_cv_sizeof_uint8_t=1
ac_cv_sizeof_uint_fast16_t=8
ac_cv_sizeof_uint_fast32_t=8
ac_cv_sizeof_uint_fast64_t=8
ac_cv_sizeof_uint_fast8_t=1
ac_cv_sizeof_uint_least16_t=2
ac_cv_sizeof_uint_least32_t=4
ac_cv_sizeof_uint_least64_t=8
ac_cv_sizeof_uint_least8_t=1
ac_cv_sizeof_unsigned=4
ac_cv_sys_file_offset_bits=no
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
hdf5_cv_host=x86_64-pc-none
hdf5_cv_printf_ll=l
hdf5_cv_system_scope_threads=yes
hdf5_cv_szlib_can_encode=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=unknown
lt_cv_dlopen=dlopen
lt_cv_dlopen_libs=-ldl
lt_cv_dlopen_self=yes
lt_cv_dlopen_self_static=no
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_FC=no
lt_cv_prog_gnu_ld=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $lib[^ ]*$$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* $.*$$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* $.*$$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing aclocal-1.14'
ADD_PARALLEL_FILES=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
AM_CXXFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_FCFLAGS=''
AM_LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
AM_MAKEFLAGS=''
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoconf'
AUTOHEADER='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoheader'
AUTOMAKE='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing automake-1.14'
AWK='gawk'
BUILD_ALL_CONDITIONAL_FALSE=''
BUILD_ALL_CONDITIONAL_TRUE=''
BUILD_CXX_CONDITIONAL_FALSE=''
BUILD_CXX_CONDITIONAL_TRUE=''
BUILD_FORTRAN_CONDITIONAL_FALSE=''
BUILD_FORTRAN_CONDITIONAL_TRUE=''
BUILD_HDF5_HL_CONDITIONAL_FALSE=''
BUILD_HDF5_HL_CONDITIONAL_TRUE=''
BUILD_PARALLEL_CONDITIONAL_FALSE=''
BUILD_PARALLEL_CONDITIONAL_TRUE=''
BUILD_SHARED_SZIP_CONDITIONAL_FALSE='#'
BUILD_SHARED_SZIP_CONDITIONAL_TRUE=''
BYTESEX=''
CC='gcc'
CCDEPMODE='depmode=gcc3'
CC_VERSION=''
CFLAGS=' '
CLEARFILEBUF='yes'
CODESTACK='no'
CONFIG_DATE=''
CONFIG_MODE='production'
CONFIG_USER=''
CPP='gcc -E'
CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
CXX='no'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=' '
CXX_VERSION=''
CYGPATH_W='echo'
DEBUG_PKG=''
DEFAULT_API_VERSION=''
DEFS=''
DEPDIR='.deps'
DEPRECATED_SYMBOLS=''
DIRECT_VFD='no'
DIRECT_VFD_CONDITIONAL_FALSE=''
DIRECT_VFD_CONDITIONAL_TRUE=''
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
EXTERNAL_FILTERS='deflate(zlib),szip(encoder)'
F9XMODEXT='mod'
F9XMODFLAG='-I'
F9XSUFFIXFLAG=''
FC2003=''
FC='gfortran'
FCFLAGS='-I. '
FCFLAGS_f90=''
FCLIBS=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath'
FC_VERSION=''
FGREP='/usr/bin/grep -F'
FORTRAN_2003_CONDITIONAL_F_FALSE='#'
FORTRAN_2003_CONDITIONAL_F_TRUE=''
FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#'
FORTRAN_HAVE_C_SIZEOF_FALSE='#'
FORTRAN_HAVE_C_SIZEOF_TRUE=''
FORTRAN_HAVE_SIZEOF_FALSE='#'
FORTRAN_HAVE_SIZEOF_TRUE=''
FORTRAN_HAVE_STORAGE_SIZE_FALSE='#'
FORTRAN_HAVE_STORAGE_SIZE_TRUE=''
FORTRAN_SHARED_CONDITIONAL_FALSE='#'
FORTRAN_SHARED_CONDITIONAL_TRUE=''
FSEARCH_DIRS=''
GREP='/usr/bin/grep'
H5_CFLAGS=' '
H5_CPPFLAGS=' -DNDEBUG -UH5_DEBUG_API'
H5_CXXFLAGS=' '
H5_FCFLAGS=' '
H5_FORTRAN_SHARED='yes'
H5_LDFLAGS=''
H5_VERSION=''
HADDR_T=''
HAVE_DMALLOC='no'
HAVE_FORTRAN_2003='yes'
HAVE_PTHREAD=''
HAVE_SHARED_CONDITIONAL_FALSE=''
HAVE_SHARED_CONDITIONAL_TRUE=''
HDF5_HL='yes'
HDF5_INTERFACES=' fortran'
HDF_CXX='no'
HDF_FORTRAN2003='yes'
HDF_FORTRAN='yes'
HID_T=''
HL='hl'
HL_FOR=''
HSIZE_T=''
HSSIZE_T=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTRUMENT='no'
INSTRUMENT_LIBRARY='no'
LD='/usr/bin/ld'
LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
LIBOBJS=''
LIBS='-lsz -lz -ldl -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LL_PATH='/opt/szip/lib'
LN_S='ln -s'
LTLIBOBJS=''
LT_STATIC_EXEC=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/usr/bin/mkdir -p'
MPE='no'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJECT_NAMELEN_DEFAULT_F=''
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='hdf5'
PACKAGE_BUGREPORT='help@hdfgroup.org'
PACKAGE_NAME='HDF5'
PACKAGE_STRING='HDF5 1.8.15'
PACKAGE_TARNAME='hdf5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8.15'
PARALLEL='yes'
PATH_SEPARATOR=':'
PERL='perl'
RANLIB='ranlib'
ROOT=''
RUNPARALLEL=''
RUNSERIAL=''
R_INTEGER=''
R_LARGE=''
SEARCH=''
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
SIZE_T=''
STATIC_EXEC='no'
STATIC_SHARED=''
STRICT_FORMAT_CHECKS=''
STRIP='strip'
TESTPARALLEL=''
THREADSAFE='no'
TIME=''
TR='/usr/bin/tr'
TRACE_API='no'
UNAME_INFO='Linux turing 4.0.4-2-ARCH #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015 x86_64 GNU/Linux'
USE_FILTER_DEFLATE='yes'
USE_FILTER_SZIP='yes'
USE_PLUGINS_CONDITIONAL_FALSE='#'
USE_PLUGINS_CONDITIONAL_TRUE=''
USINGMEMCHECKER='no'
VERSION='1.8.15'
WORDS_BIGENDIAN=''
ac_ct_AR=''
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_FC='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
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am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-none'
build_alias='x86_64'
build_cpu='x86_64'
build_os='none'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared='no'
enable_static='yes'
exec_prefix='NONE'
host='x86_64-pc-none'
host_alias=''
host_cpu='x86_64'
host_os='none'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/opt/hdf5'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.15"
#define PACKAGE_STRING "HDF5 1.8.15"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.15"
#define FC_FUNC(name,NAME) name ## _
#define FC_FUNC_(name,NAME) name ## _
#define INCLUDE_HL 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_DIRENT_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 0
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_SZLIB_H 1
#define HAVE_LIBSZ 1
#define HAVE_FILTER_SZIP 1
#define HAVE_TM_GMTOFF 1
#define HAVE_TIMEZONE 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_CLOCK_GETTIME 1
#define HAVE_DIFFTIME 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_ASPRINTF 1
#define HAVE_VASPRINTF 1
#define HAVE_VSNPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1

configure: exit 1

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------

Mohamad_Chaarawi · June 4, 2015, 1:44pm

Could you add mpich to your $LD_LIBRARY_PATH and $PATH and try again?

export PATH=/mpich/install/path/bin/:$PATH
export LD_LIBRARY_PATH=/mpich/install/path/lib:$LD_LIBRARY_PATH

Thanks,
Mohamad

···

-----Original Message-----
From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf Of Maxim Abalenkov
Sent: Thursday, June 04, 2015 8:26 AM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] [problem configuring parallel installation of HDF5]

Hello Pierre,

I have tried to set the CPPFLAGS to /usr/include and /opt/mpich/include, where MPICH is installed. I have also created a soft link /usr/include/mpi.h —> /opt/mpich/include/mpi.h. Unfortunately, the error persists.

—
Kind regards,
Maxim Abalenkov

On Jun 4, 2015, at 2:03 PM, Pierre de Buyl <pierre.debuyl@chem.kuleuven.be> wrote:

Can you try with

export CPPFLAGS="-I/usr/include"

(or the appropriate path the the mpi.h headers)?

The complaint by the compiler is about finding "mpi.h".

Regards,

Pierre

On Thu, Jun 04, 2015 at 11:42:22AM +0100, Maxim Abalenkov wrote:

Dear all,

I experience a problem configuring a parallel installation of HDF5 version
1.8.15. I would like to configure it with Intel Fortran compiler 14.0.0
20130728 and MPICH 3.1.4 on Arch Linux 64-bit. As a test I have done a
sequential configuration, that worked. The environment flags I have used
were:

export F77=$MPICH/mpifort
export F90=$MPICH/mpifort
export F9X=$MPICH/mpifort
export CC=$MPICH/mpicc
export FFLAGS="-I/usr/include/"
export CFLAGS="-I/usr/include/"
export LDFLAGS="-L/usr/lib/"

The configure command was launched with the following switches:

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
               --with-zlib=/opt/zlib/include,/opt/zlib/lib \
               --with-szlib=/opt/szip/include,/opt/szip/lib \
               --enable-production --build=x86_64

The configure command for parallel HDF has an additional switch
(--enable-parallel):

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
               --with-zlib=/opt/zlib/include,/opt/zlib/lib \
               --with-szlib=/opt/szip/include,/opt/szip/lib \
               --enable-production --build=x86_64 \
               --enable-parallel

Parallel configuration breaks with the following error message:

checking whether a simple MPI-IO C program can be linked... no
configure: error: unable to link a simple MPI-IO C program

As a test I have tried to compile and run "sample_mpio.f90" provided in the
README_parallel file:

mpifort sample_mpio.f90 -o sample_mpio
mpiexec -n 4 ./sample_mpio

The sample program compiles and runs perfectly fine.

Running configuration script with the superuser privileges is necessary,
since otherwise I receive an access denied messages in the middle of the
configuration and configure script fails. Any guidance or hints would be
most welcome. The config.log file is attached.

--
Kind regards,
Maxim Abalenkov

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by HDF5 configure 1.8.15, which was
generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure --prefix=/opt/hdf5 --enable-fortran --enable-fortran2003 --with-zlib=/opt/zlib/include,/opt/zlib/lib --with-szlib=/opt/szip/include,/opt/szip/lib --enable-production --build=x86_64 --enable-parallel

## --------- ##
## Platform. ##
## --------- ##

hostname = turing
uname -m = x86_64
uname -r = 4.0.4-2-ARCH
uname -s = Linux
uname -v = #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /opt/mpich/bin
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/mpirt/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64_mic
PATH: /opt/intel/composer_xe_2013_sp1.0.080/debugger/gui/intel64
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/lib/jvm/default/bin
PATH: /usr/lib32/jvm/default/bin
PATH: /usr/bin/site_perl
PATH: /usr/bin/vendor_perl
PATH: /usr/bin/core_perl

## ----------- ##
## Core tests. ##
## ----------- ##

configure:3072: checking for a BSD-compatible install
configure:3140: result: /usr/bin/install -c
configure:3151: checking whether build environment is sane
configure:3206: result: yes
configure:3357: checking for a thread-safe mkdir -p
configure:3396: result: /usr/bin/mkdir -p
configure:3403: checking for gawk
configure:3419: found /usr/bin/gawk
configure:3430: result: gawk
configure:3441: checking whether make sets $(MAKE)
configure:3463: result: yes
configure:3492: checking whether make supports nested variables
configure:3509: result: yes
configure:3645: checking whether make supports nested variables
configure:3662: result: yes
configure:3685: checking whether to enable maintainer-specific portions of Makefiles
configure:3694: result: no
configure:3738: checking build system type
configure:3752: result: x86_64-pc-none
configure:3772: checking host system type
configure:3785: result: x86_64-pc-none
configure:3853: checking shell variables initial values
ACLOCAL='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing aclocal-1.14'
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=
AM_CPPFLAGS=
AM_CXXFLAGS=
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY=0
AM_FCFLAGS=
AM_LDFLAGS=
AM_V='$(V)'
AUTOCONF='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoconf'
AUTOHEADER='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoheader'
AUTOMAKE='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing automake-1.14'
AWK=gawk
BASH=/bin/sh
BASHOPTS=cmdhist:complete_fullquote:extquote:force_fignore:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=([0]="8")
BASH_ARGV=([0]="--enable-parallel" [1]="--build=x86_64" [2]="--enable-production" [3]="--with-szlib=/opt/szip/include,/opt/szip/lib" [4]="--with-zlib=/opt/zlib/include,/opt/zlib/lib" [5]="--enable-fortran2003" [6]="--enable-fortran" [7]="--prefix=/opt/hdf5")
BASH_CMDS=()
BASH_LINENO=([0]="0")
BASH_SOURCE=([0]="./configure")
BASH_VERSINFO=([0]="4" [1]="3" [2]="39" [3]="1" [4]="release" [5]="x86_64-unknown-linux-gnu")
BASH_VERSION='4.3.39(1)-release'
CFLAGS=
CPPFLAGS=
CXXFLAGS=
CYGPATH_W=echo
DIRSTACK=()
DISPLAY=:0
DUALCASE=1
ECHO_C=
ECHO_N=-n
ECHO_T=
EUID=0
FC=
FCFLAGS=
GROUPS=()
HOME=/root
HOSTNAME=turing
HOSTTYPE=x86_64
IFS='
'
INSTALL='/usr/bin/install -c'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LANG=en_US.UTF-8
LANGUAGE=C
LC_ALL=C
LDFLAGS=
LIBOBJS=
LINENO=3853
LOGNAME=root
MACHTYPE=x86_64-unknown-linux-gnu
MAINT='#'
MAINTAINER_MODE_FALSE=
MAINTAINER_MODE_TRUE='#'
MAKEFLAGS=
MAKEINFO='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing makeinfo'
MFLAGS=
MISSING='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing'
MKDIR_P='/usr/bin/mkdir -p'
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PACKAGE=hdf5
PACKAGE_BUGREPORT=help@hdfgroup.org
PACKAGE_NAME=HDF5
PACKAGE_STRING='HDF5 1.8.15'
PACKAGE_TARNAME=hdf5
PACKAGE_URL=
PACKAGE_VERSION=1.8.15
PATH=/opt/mpich/bin:/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64:/opt/intel/composer_xe_2013_sp1.0.080/mpirt/bin/intel64:/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64:/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64_mic:/opt/intel/composer_xe_2013_sp1.0.080/debugger/gui/intel64:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/lib/jvm/default/bin:/usr/lib32/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl
PATH_SEPARATOR=:
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=17604
PS1='$ '
PS2='> '
PS4='+ '
PWD=/home/mabalenk/install/hdf5/hdf5-1.8.15
SET_MAKE=
SHELL=/bin/sh
SHELLOPTS=braceexpand:hashall:interactive-comments:posix
SHLVL=1
SUDO_COMMAND='./configure --prefix=/opt/hdf5 --enable-fortran --enable-fortran2003 --with-zlib=/opt/zlib/include,/opt/zlib/lib --with-szlib=/opt/szip/include,/opt/szip/lib --enable-production --build=x86_64 --enable-parallel'
SUDO_GID=1000
SUDO_UID=1000
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TERM=xterm
UID=0
USER=root
USERNAME=root
USE_MAINTAINER_MODE=no
VERSION=1.8.15
XAUTHORITY=/tmp/xauth-1000-_0
_='checking shell variables initial values... '
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ac_arg=build_alias=x86_64
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ac_cache_corrupted=false
ac_clean_files=
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
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ac_confdir=.
ac_config_commands=' pubconf'
ac_config_guess='/bin/sh bin/config.guess'
ac_config_headers=' src/H5config.h'
ac_config_libobj_dir=.
ac_config_sub='/bin/sh bin/config.sub'
ac_configure='/bin/sh bin/configure'
ac_configure_args=' '\''--prefix=/opt/hdf5'\'' '\''--enable-fortran'\'' '\''--enable-fortran2003'\'' '\''--with-zlib=/opt/zlib/include,/opt/zlib/lib'\'' '\''--with-szlib=/opt/szip/include,/opt/szip/lib'\'' '\''--enable-production'\'' '\''--build=x86_64'\'' '\''--enable-parallel'\'' '\''build_alias=x86_64'\'''
ac_cpp='$CPP $CPPFLAGS'
ac_cv_build=x86_64-pc-none
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
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ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_FCFLAGS_set=
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ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=x86_64-pc-none
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_make_make_set=yes
ac_dashdash=
ac_default_prefix=/home/mabalenk/install/hdf5/hdf5-1.8.15/hdf5
ac_dir=bin
ac_env_CCC_set=
ac_env_CCC_value=
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ac_env_CPP_set=
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ac_env_CXX_set=
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ac_env_FC_set=
ac_env_FC_value=
ac_env_LDFLAGS_set=
ac_env_LDFLAGS_value=
ac_env_LIBS_set=
ac_env_LIBS_value=
ac_env_build_alias_set=set
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ac_exec_ext=
ac_ext=c
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ac_includes_default='#include <stdio.h>
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ac_install_sh='bin/install-sh -c'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_ls_di='58503 .'
ac_make=make
ac_msg='sources are in ., but `cd .'\'' does not work'
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ac_new_set=
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ac_old_val=
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CC
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ac_prev=
ac_prog=gawk
ac_pwd=/home/mabalenk/install/hdf5/hdf5-1.8.15
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ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
ac_signal=0
ac_site_file=/opt/hdf5/etc/config.site
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H5_LDFLAGS
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H5_FCFLAGS
H5_CPPFLAGS
H5_CFLAGS
CPPFLAGS
host_os
host_vendor
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host
build_os
build_vendor
build_cpu
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MAINT
MAINTAINER_MODE_FALSE
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AM_BACKSLASH
AM_DEFAULT_VERBOSITY
AM_DEFAULT_V
AM_V
am__untar
am__tar
AMTAR
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INSTALL_STRIP_PROGRAM
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am__isrc
INSTALL_DATA
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LIBS
ECHO_T
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SHELL'
ac_tool_prefix=
ac_unique_file=src/H5.c
ac_unrecognized_opts=
ac_unrecognized_sep=
ac_user_opts='
enable_option_checking
enable_silent_rules
enable_maintainer_mode
enable_dependency_tracking
enable_unsupported
enable_fortran
enable_fortran2003
enable_cxx
enable_hl
enable_shared
enable_static
with_pic
enable_fast_install
with_gnu_ld
with_sysroot
enable_libtool_lock
enable_static_exec
enable_sharedlib_rpath
enable_production
with_fnord
with_dmalloc
with_zlib
with_szlib
enable_threadsafe
with_pthread
enable_debug
enable_codestack
enable_metadata_trace_file
enable_trace
enable_instrument
enable_clear_file_buffers
enable_using_memchecker
enable_parallel
with_mpe
enable_direct_vfd
with_default_plugindir
enable_dconv_exception
enable_dconv_accuracy
enable_build_all
enable_deprecated_symbols
with_default_api_version
enable_strict_format_checks
enable_embedded_libinfo
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ac_useropt=parallel
ac_useropt_orig=parallel
ac_val='${datarootdir}/man'
ac_var=CPP
ac_word=gawk
am__api_version=1.14
am__leading_dot=.
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
am_aux_dir=/home/mabalenk/install/hdf5/hdf5-1.8.15/bin
am_cv_make_support_nested_variables=yes
am_lf='
'
am_make=make
am_missing_run='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing '
am_sleep_pid=17744
as_basename=basename
as_bourne_compatible='if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
emulate sh
NULLCMD=:
# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
# is contrary to our usage. Disable this feature.
alias -g '\''${1+"$@"}'\''='\''"$@"'\''
setopt NO_GLOB_SUBST
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case `(set -o) 2>/dev/null` in #(
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as_cr_Letters=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ
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as_cr_letters=abcdefghijklmnopqrstuvwxyz
as_dir=/usr/bin
as_dirname=dirname
as_echo='printf %s\n'
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as_executable_p=as_fn_executable_p
as_expr=expr
as_have_required=yes
as_lineno_1=477
as_lineno_1a=477
as_lineno_2=478
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as_mkdir_p='mkdir -p "$as_dir"'
as_myself=./configure
as_nl='
'
as_required='as_fn_return () { (exit $1); }
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exitcode=0
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as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
if ( set x; as_fn_ret_success y && test x = "$1" ); then :

else
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fi
test x$exitcode = x0 || exit 1
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as_suggested=' as_lineno_1=198 as_lineno_1a=$LINENO
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test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || (
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test $(( 1 + 1 )) = 2 || exit 1'
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as_unset=as_fn_unset
as_var=MAILPATH
bindir='${exec_prefix}/bin'
build=x86_64-pc-none
build_alias=x86_64
build_cpu=x86_64
build_os=none
build_vendor=pc
cache_file=/dev/null
cross_compiling=no
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_fortran=yes
enable_fortran2003=yes
enable_parallel=yes
enable_production=yes
exec_prefix=NONE
host=x86_64-pc-none
host_cpu=x86_64
host_os=none
host_vendor=pc
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
no_create=
no_recursion=
oldincludedir=/usr/include
pdfdir='${docdir}'
prefix=/opt/hdf5
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
psdir='${docdir}'
saved_user_CFLAGS=
saved_user_CPPFLAGS=
saved_user_CXXFLAGS=
saved_user_FCFLAGS=
saved_user_LDFLAGS=
sbindir='${exec_prefix}/sbin'
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silent=
site=
srcdir=.
subdirs=
sysconfdir='${prefix}/etc'
target=
verbose=
with_szlib=/opt/szip/include,/opt/szip/lib
with_zlib=/opt/zlib/include,/opt/zlib/lib
x_includes=NONE
x_libraries=NONE
configure:3856: result: done
configure:3905: checking if basename works
configure:3911: result: yes
configure:3916: checking if xargs works
configure:3922: result: yes
configure:3930: checking for cached host
configure:3937: result: none
configure:3997: checking for config x86_64-pc-none
configure:4005: result: no
configure:3997: checking for config x86_64-pc-none
configure:4005: result: no
configure:3997: checking for config pc-none
configure:4005: result: no
configure:3997: checking for config pc-none
configure:4005: result: no
configure:3997: checking for config x86_64-none
configure:4005: result: no
configure:3997: checking for config x86_64-none
configure:4005: result: no
configure:3997: checking for config x86_64-pc
configure:4005: result: no
configure:3997: checking for config none
configure:4005: result: no
configure:3997: checking for config none
configure:4005: result: no
configure:3997: checking for config pc
configure:4005: result: no
configure:3997: checking for config x86_64
configure:4005: result: no
configure:4017: checking for config ./config/site-specific/host-turing
configure:4025: result: no
configure:4102: checking for gcc
configure:4118: found /usr/bin/gcc
configure:4129: result: gcc
configure:4358: checking for C compiler version
configure:4367: gcc --version >&5
gcc (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4378: $? = 0
configure:4367: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:4378: $? = 0
configure:4367: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4378: $? = 1
configure:4367: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:4378: $? = 1
configure:4398: checking whether the C compiler works
configure:4420: gcc conftest.c >&5
configure:4424: $? = 0
configure:4472: result: yes
configure:4475: checking for C compiler default output file name
configure:4477: result: a.out
configure:4483: checking for suffix of executables
configure:4490: gcc -o conftest conftest.c >&5
configure:4494: $? = 0
configure:4516: result:
configure:4538: checking whether we are cross compiling
configure:4546: gcc -o conftest conftest.c >&5
configure:4550: $? = 0
configure:4557: ./conftest
configure:4561: $? = 0
configure:4576: result: no
configure:4581: checking for suffix of object files
configure:4603: gcc -c conftest.c >&5
configure:4607: $? = 0
configure:4628: result: o
configure:4632: checking whether we are using the GNU C compiler
configure:4651: gcc -c conftest.c >&5
configure:4651: $? = 0
configure:4660: result: yes
configure:4669: checking whether gcc accepts -g
configure:4689: gcc -c -g conftest.c >&5
configure:4689: $? = 0
configure:4730: result: yes
configure:4747: checking for gcc option to accept ISO C89
configure:4810: gcc -c conftest.c >&5
configure:4810: $? = 0
configure:4823: result: none needed
configure:4848: checking whether gcc understands -c and -o together
configure:4870: gcc -c conftest.c -o conftest2.o
configure:4873: $? = 0
configure:4870: gcc -c conftest.c -o conftest2.o
configure:4873: $? = 0
configure:4885: result: yes
configure:4913: checking for style of include used by make
configure:4941: result: GNU
configure:4967: checking dependency style of gcc
configure:5078: result: gcc3
configure:5100: checking if unsupported combinations of configure options are allowed
configure:5110: result: no
configure:5125: checking if Fortran interface enabled
configure:5143: checking if Fortran 2003 interface enabled
configure:5241: checking for gfortran
configure:5257: found /usr/bin/gfortran
configure:5268: result: gfortran
configure:5294: checking for Fortran compiler version
configure:5303: gfortran --version >&5
GNU Fortran (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5314: $? = 0
configure:5303: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:5314: $? = 0
configure:5303: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5314: $? = 1
configure:5303: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:5314: $? = 1
configure:5323: checking whether we are using the GNU Fortran compiler
configure:5336: gfortran -c conftest.F >&5
configure:5336: $? = 0
configure:5345: result: yes
configure:5351: checking whether gfortran accepts -g
configure:5362: gfortran -c -g conftest.f >&5
configure:5362: $? = 0
configure:5370: result: yes
configure:5403: checking for Fortran flag to compile .f90 files
configure:5423: gfortran -c conftest.f90 >&5
configure:5423: $? = 0
configure:5432: result: none
configure:5567: checking for Fortran compiler version
configure:5576: gfortran --version >&5
GNU Fortran (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5587: $? = 0
configure:5576: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:5587: $? = 0
configure:5576: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5587: $? = 1
configure:5576: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:5587: $? = 1
configure:5596: checking whether we are using the GNU Fortran compiler
configure:5618: result: yes
configure:5624: checking whether gfortran accepts -g
configure:5643: result: yes
configure:5672: checking what gfortran does with modules
configure:5725: checking how gfortran finds modules
configure:5737: gfortran -Iconftestdir -c conftest.f90 1>&5
configure:5740: $? = 0
configure:5778: checking how to get verbose linking output from gfortran
configure:5788: gfortran -c -I. conftest.f90 >&5
configure:5788: $? = 0
configure:5806: gfortran -o conftest -I. -v conftest.f90
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Thread model: posix
gcc version 5.1.0 (GCC)
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I . -quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/cc5B0Jtw.s
GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I . --64 -o /tmp/ccK4bt2n.o /tmp/cc5B0Jtw.s
GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.0
Reading specs from /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccWKKPBf.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. /tmp/ccK4bt2n.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
configure:5889: result: -v
configure:5891: checking for Fortran libraries of gfortran
configure:5914: gfortran -o conftest -I. -v conftest.f90
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Thread model: posix
gcc version 5.1.0 (GCC)
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I . -quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/ccyHgq0y.s
GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I . --64 -o /tmp/cci78AFq.o /tmp/ccyHgq0y.s
GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.0
Reading specs from /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwIrIli.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. /tmp/cci78AFq.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
configure:6110: result: -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath
configure:6126: checking for dummy main to link with Fortran libraries
configure:6160: gcc -o conftest conftest.c -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6160: $? = 0
configure:6205: result: none
configure:6237: checking for Fortran name-mangling scheme
configure:6250: gfortran -c -I. conftest.f90 >&5
configure:6250: $? = 0
configure:6291: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
/tmp/ccY01qfA.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `foobar'
collect2: error: ld returned 1 exit status
configure:6291: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> /* end confdefs.h. */
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char foobar ();
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return foobar ();
> ;
> return 0;
> }
configure:6291: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6291: $? = 0
configure:6349: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6349: $? = 0
configure:6391: result: lower case, underscore, no extra underscore
configure:6460: checking if Fortran compiler supports intrinsic SIZEOF
configure:6469: gfortran -o conftest -I. conftest.f90 >&5
configure:6469: $? = 0
configure:6470: result: yes
configure:6484: checking if Fortran compiler supports intrinsic C_SIZEOF
configure:6496: gfortran -o conftest -I. conftest.f90 >&5
configure:6496: $? = 0
configure:6497: result: yes
configure:6511: checking if Fortran compiler supports intrinsic STORAGE_SIZE
configure:6522: gfortran -o conftest -I. conftest.f90 >&5
configure:6522: $? = 0
configure:6523: result: yes
configure:6539: checking if Fortran default REAL is DOUBLE PRECISION
configure:6566: gfortran -c -I. conftest.f90 >&5
configure:6566: $? = 0
configure:6567: result: no
configure:6582: checking if Fortran compiler version compatible with Fortran 2003 HDF
configure:6601: gfortran -o conftest -I. conftest.f90 >&5
configure:6601: $? = 0
configure:6602: result: yes
configure:6736: checking for g++
configure:6752: found /usr/bin/g++
configure:6763: result: g++
configure:6790: checking for C++ compiler version
configure:6799: g++ --version >&5
g++ (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6810: $? = 0
configure:6799: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:6810: $? = 0
configure:6799: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:6810: $? = 1
configure:6799: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:6810: $? = 1
configure:6814: checking whether we are using the GNU C++ compiler
configure:6841: g++ -c conftest.cpp >&5
configure:6841: $? = 0
configure:6850: result: yes
configure:6859: checking whether g++ accepts -g
configure:6887: g++ -c -g conftest.cpp >&5
configure:6887: $? = 0
configure:6944: result: yes
configure:6969: checking dependency style of g++
configure:7080: result: gcc3
configure:7100: checking how to run the C++ preprocessor
configure:7127: g++ -E conftest.cpp
configure:7127: $? = 0
configure:7141: g++ -E conftest.cpp
conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7141: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:7166: result: g++ -E
configure:7186: g++ -E conftest.cpp
configure:7186: $? = 0
configure:7200: g++ -E conftest.cpp
conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7200: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:7229: checking if c++ interface enabled
configure:7388: result: no
configure:7409: checking if high level library is enabled
configure:7446: checking for perl
configure:7462: found /usr/bin/perl
configure:7473: result: perl
configure:7496: checking for ar
configure:7512: found /usr/bin/ar
configure:7523: result: ar
configure:7542: checking whether make sets $(MAKE)
configure:7564: result: yes
configure:7581: checking for tr
configure:7599: found /usr/bin/tr
configure:7611: result: /usr/bin/tr
configure:7630: checking if srcdir= and time commands work together
configure:7641: result: no
configure:7693: checking if shared Fortran libraries are supported
configure:7727: result: yes
configure:7812: checking how to print strings
configure:7839: result: printf
configure:7860: checking for a sed that does not truncate output
configure:7924: result: /usr/bin/sed
configure:7942: checking for grep that handles long lines and -e
configure:8000: result: /usr/bin/grep
configure:8005: checking for egrep
configure:8067: result: /usr/bin/grep -E
configure:8072: checking for fgrep
configure:8134: result: /usr/bin/grep -F
configure:8169: checking for ld used by gcc
configure:8236: result: /usr/bin/ld
configure:8243: checking if the linker (/usr/bin/ld) is GNU ld
configure:8258: result: yes
configure:8270: checking for BSD- or MS-compatible name lister (nm)
configure:8319: result: /usr/bin/nm -B
configure:8449: checking the name lister (/usr/bin/nm -B) interface
configure:8456: gcc -c conftest.c >&5
configure:8459: /usr/bin/nm -B "conftest.o"
configure:8462: output
0000000000000000 B some_variable
configure:8469: result: BSD nm
configure:8472: checking whether ln -s works
configure:8476: result: yes
configure:8484: checking the maximum length of command line arguments
configure:8614: result: 1572864
configure:8631: checking whether the shell understands some XSI constructs
configure:8641: result: yes
configure:8645: checking whether the shell understands "+="
configure:8651: result: yes
configure:8686: checking how to convert x86_64-pc-none file names to x86_64-pc-none format
configure:8726: result: func_convert_file_noop
configure:8733: checking how to convert x86_64-pc-none file names to toolchain format
configure:8753: result: func_convert_file_noop
configure:8760: checking for /usr/bin/ld option to reload object files
configure:8767: result: -r
configure:8841: checking for objdump
configure:8857: found /usr/bin/objdump
configure:8868: result: objdump
configure:8900: checking how to recognize dependent libraries
configure:9102: result: unknown
configure:9187: checking for dlltool
configure:9217: result: no
configure:9247: checking how to associate runtime and link libraries
configure:9274: result: printf %s\n
configure:9398: checking for archiver @FILE support
configure:9423: gcc -c conftest.c >&5
configure:9423: $? = 0
configure:9426: ar cru libconftest.a @conftest.lst >&5
configure:9429: $? = 0
configure:9434: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:9437: $? = 1
configure:9449: result: @
configure:9507: checking for strip
configure:9523: found /usr/bin/strip
configure:9534: result: strip
configure:9606: checking for ranlib
configure:9622: found /usr/bin/ranlib
configure:9633: result: ranlib
configure:9735: checking command to parse /usr/bin/nm -B output from gcc object
configure:9855: gcc -c conftest.c >&5
configure:9858: $? = 0
configure:9862: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:9865: $? = 0
configure:9931: gcc -o conftest conftest.c conftstm.o >&5
configure:9934: $? = 0
configure:9972: result: ok
configure:10009: checking for sysroot
configure:10039: result: no
configure:10303: checking for mt
configure:10333: result: no
configure:10353: checking if : is a manifest tool
configure:10359: : '-?'
configure:10367: result: no
configure:11017: checking how to run the C preprocessor
configure:11048: gcc -E conftest.c
configure:11048: $? = 0
configure:11062: gcc -E conftest.c
conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:11062: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:11087: result: gcc -E
configure:11107: gcc -E conftest.c
configure:11107: $? = 0
configure:11121: gcc -E conftest.c
conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:11121: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:11150: checking for ANSI C header files
configure:11178: gcc -c conftest.c >&5
configure:11178: $? = 0
configure:11251: gcc -o conftest conftest.c >&5
configure:11251: $? = 0
configure:11251: ./conftest
configure:11251: $? = 0
configure:11262: result: yes
configure:11275: checking for sys/types.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for sys/stat.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for stdlib.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for string.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for memory.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for strings.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for inttypes.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for stdint.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for unistd.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11289: checking for dlfcn.h
configure:11289: gcc -c conftest.c >&5
configure:11289: $? = 0
configure:11289: result: yes
configure:11504: checking for objdir
configure:11519: result: .libs
configure:11786: checking if gcc supports -fno-rtti -fno-exceptions
configure:11804: gcc -c -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:11808: $? = 0
configure:11821: result: no
configure:12148: checking for gcc option to produce PIC
configure:12155: result: -fPIC -DPIC
configure:12163: checking if gcc PIC flag -fPIC -DPIC works
configure:12181: gcc -c -fPIC -DPIC -DPIC conftest.c >&5
configure:12185: $? = 0
configure:12198: result: yes
configure:12227: checking if gcc static flag -static works
configure:12255: result: yes
configure:12270: checking if gcc supports -c -o file.o
configure:12291: gcc -c -o out/conftest2.o conftest.c >&5
configure:12295: $? = 0
configure:12317: result: yes
configure:12325: checking if gcc supports -c -o file.o
configure:12372: result: yes
configure:12405: checking whether the gcc linker (/usr/bin/ld) supports shared libraries
configure:13574: result: yes
configure:13611: checking whether -lc should be explicitly linked in
configure:13619: gcc -c conftest.c >&5
configure:13622: $? = 0
configure:13637: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
configure:13640: $? = 0
configure:13654: result: no
configure:13814: checking dynamic linker characteristics
configure:14555: result: no
configure:14662: checking how to hardcode library paths into programs
configure:14687: result: immediate
configure:14789: checking for shl_load
configure:14789: gcc -o conftest conftest.c >&5
/tmp/cciXRyKJ.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `shl_load'
collect2: error: ld returned 1 exit status
configure:14789: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
> /* Define shl_load to an innocuous variant, in case <limits.h> declares shl_load.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define shl_load innocuous_shl_load
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char shl_load (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef shl_load
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char shl_load ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_shl_load || defined __stub___shl_load
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return shl_load ();
> ;
> return 0;
> }
configure:14789: result: no
configure:14793: checking for shl_load in -ldld
configure:14826: gcc -o conftest conftest.c -ldld >&5
/usr/bin/ld: cannot find -ldld
collect2: error: ld returned 1 exit status
configure:14826: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char shl_load ();
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return shl_load ();
> ;
> return 0;
> }
configure:14835: result: no
configure:14840: checking for dlopen
configure:14840: gcc -o conftest conftest.c >&5
/tmp/ccU8m5gO.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `dlopen'
collect2: error: ld returned 1 exit status
configure:14840: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
> /* Define dlopen to an innocuous variant, in case <limits.h> declares dlopen.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define dlopen innocuous_dlopen
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char dlopen (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef dlopen
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char dlopen ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_dlopen || defined __stub___dlopen
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return dlopen ();
> ;
> return 0;
> }
configure:14840: result: no
configure:14844: checking for dlopen in -ldl
configure:14877: gcc -o conftest conftest.c -ldl >&5
configure:14877: $? = 0
configure:14886: result: yes
configure:15021: checking whether a program can dlopen itself
configure:15101: gcc -o conftest -DHAVE_DLFCN_H -Wl,--export-dynamic conftest.c -ldl >&5
configure:15104: $? = 0
configure:15122: result: yes
configure:15127: checking whether a statically linked program can dlopen itself
configure:15207: gcc -o conftest -DHAVE_DLFCN_H -Wl,--export-dynamic -static conftest.c -ldl >&5
/tmp/ccRkAuGS.o: In function `main':
conftest.c:(.text+0x1e): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/usr/bin/ld: dynamic STT_GNU_IFUNC symbol `strcmp' with pointer equality in `/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libc.a(strcmp.o)' can not be used when making an executable; recompile with -fPIE and relink with -pie
collect2: error: ld returned 1 exit status
configure:15210: $? = 1
configure:15228: result: no
configure:15267: checking whether stripping libraries is possible
configure:15272: result: yes
configure:15307: checking if libtool supports shared libraries
configure:15309: result: no
configure:15312: checking whether to build shared libraries
configure:15333: result: no
configure:15336: checking whether to build static libraries
configure:15340: result: yes
configure:18681: checking if libtool supports shared libraries
configure:18683: result: no
configure:18686: checking whether to build shared libraries
configure:18706: result: no
configure:18709: checking whether to build static libraries
configure:18713: result: yes
configure:18747: gfortran -c -I. conftest.f90 >&5
configure:18750: $? = 0
configure:19179: checking for gfortran option to produce PIC
configure:19186: result: -fPIC
configure:19194: checking if gfortran PIC flag -fPIC works
configure:19212: gfortran -c -I. -fPIC conftest.f90 >&5
configure:19216: $? = 0
configure:19229: result: yes
configure:19252: checking if gfortran static flag -static works
configure:19280: result: no
configure:19292: checking if gfortran supports -c -o file.o
configure:19313: gfortran -c -I. -o out/conftest2.o conftest.f90 >&5
configure:19317: $? = 0
configure:19339: result: yes
configure:19344: checking if gfortran supports -c -o file.o
configure:19391: result: yes
configure:19421: checking whether the gfortran linker (/usr/bin/ld) supports shared libraries
configure:20524: result: yes
configure:20665: checking dynamic linker characteristics
configure:21326: result: no
configure:21379: checking how to hardcode library paths into programs
configure:21404: result: immediate
configure:21462: checking if we should install only statically linked executables
configure:21507: checking if -Wl,-rpath should be used to link shared libs in nondefault directories
configure:21525: result: yes
configure:21544: checking whether make will build with undefined variables
configure:21553: result: yes
configure:21568: checking for production mode
configure:21579: result: production
configure:21618: checking for ceil in -lm
configure:21651: gcc -o conftest conftest.c -lm >&5
conftest.c:33:6: warning: conflicting types for built-in function 'ceil'
char ceil ();
     ^
configure:21651: $? = 0
configure:21660: result: yes
configure:21671: checking for dlopen in -ldl
configure:21713: result: yes
configure:21838: checking for ANSI C header files
configure:21950: result: yes
configure:21958: checking whether time.h and sys/time.h may both be included
configure:21986: gcc -c conftest.c >&5
configure:21986: $? = 0
configure:21993: result: yes
configure:22006: checking sys/resource.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/resource.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/resource.h
configure:22006: result: yes
configure:22006: checking sys/time.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/time.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/time.h
configure:22006: result: yes
configure:22006: checking for unistd.h
configure:22006: result: yes
configure:22006: checking sys/ioctl.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/ioctl.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/ioctl.h
configure:22006: result: yes
configure:22006: checking for sys/stat.h
configure:22006: result: yes
configure:22019: checking sys/socket.h usability
configure:22019: gcc -c conftest.c >&5
configure:22019: $? = 0
configure:22019: result: yes
configure:22019: checking sys/socket.h presence
configure:22019: gcc -E conftest.c
configure:22019: $? = 0
configure:22019: result: yes
configure:22019: checking for sys/socket.h
configure:22019: result: yes
configure:22019: checking for sys/types.h
configure:22019: result: yes
configure:22032: checking stddef.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking stddef.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for stddef.h
configure:22032: result: yes
configure:22032: checking setjmp.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking setjmp.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for setjmp.h
configure:22032: result: yes
configure:22032: checking features.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking features.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for features.h
configure:22032: result: yes
configure:22044: checking dirent.h usability
configure:22044: gcc -c conftest.c >&5
configure:22044: $? = 0
configure:22044: result: yes
configure:22044: checking dirent.h presence
configure:22044: gcc -E conftest.c
configure:22044: $? = 0
configure:22044: result: yes
configure:22044: checking for dirent.h
configure:22044: result: yes
configure:22056: checking for stdint.h
configure:22056: result: yes
configure:22070: checking mach/mach_time.h usability
configure:22070: gcc -c conftest.c >&5
conftest.c:75:28: fatal error: mach/mach_time.h: No such file or directory
compilation terminated.
configure:22070: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <mach/mach_time.h>
configure:22070: result: no
configure:22070: checking mach/mach_time.h presence
configure:22070: gcc -E conftest.c
conftest.c:42:28: fatal error: mach/mach_time.h: No such file or directory
compilation terminated.
configure:22070: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <mach/mach_time.h>
configure:22070: result: no
configure:22070: checking for mach/mach_time.h
configure:22070: result: no
configure:22173: checking io.h usability
configure:22173: gcc -c conftest.c >&5
conftest.c:75:16: fatal error: io.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <io.h>
configure:22173: result: no
configure:22173: checking io.h presence
configure:22173: gcc -E conftest.c
conftest.c:42:16: fatal error: io.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <io.h>
configure:22173: result: no
configure:22173: checking for io.h
configure:22173: result: no
configure:22173: checking winsock2.h usability
configure:22173: gcc -c conftest.c >&5
conftest.c:75:22: fatal error: winsock2.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <winsock2.h>
configure:22173: result: no
configure:22173: checking winsock2.h presence
configure:22173: gcc -E conftest.c
conftest.c:42:22: fatal error: winsock2.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <winsock2.h>
configure:22173: result: no
configure:22173: checking for winsock2.h
configure:22173: result: no
configure:22173: checking sys/timeb.h usability
configure:22173: gcc -c conftest.c >&5
configure:22173: $? = 0
configure:22173: result: yes
configure:22173: checking sys/timeb.h presence
configure:22173: gcc -E conftest.c
configure:22173: $? = 0
configure:22173: result: yes
configure:22173: checking for sys/timeb.h
configure:22173: result: yes
configure:22270: checking for _FILE_OFFSET_BITS value needed for large files
configure:22303: gcc -c conftest.c >&5
configure:22303: $? = 0
configure:22343: result: no
configure:22522: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:55:1: error: unknown type name 'off64_t'
off64_t n = 0;
^
configure:22522: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> /* end confdefs.h. */
> #include <sys/types.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> off64_t n = 0;
> ;
> return 0;
> }
configure:22536: result: skipping test for lseek64(), fseeko64 , ftello64, ftruncate64() because off64_t is not defined
configure:22543: checking for fseeko
configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
configure:22543: $? = 0
configure:22543: result: yes
configure:22543: checking for ftello
configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
configure:22543: $? = 0
configure:22543: result: yes
configure:22573: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:59:15: error: storage size of 'sb' isn't known
struct stat64 sb;
              ^
configure:22573: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
>
> #include <sys/types.h>
> #include <sys/stat.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct stat64 sb;
> ;
> return 0;
> }
configure:22587: result: skipping test for stat64() and fstat64()
configure:22595: checking for off_t
configure:22595: gcc -c conftest.c >&5
configure:22595: $? = 0
configure:22595: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:20: error: expected expression before ')' token
if (sizeof ((off_t)))
                   ^
configure:22595: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((off_t)))
> return 0;
> ;
> return 0;
> }
configure:22595: result: yes
configure:22606: checking for size_t
configure:22606: gcc -c conftest.c >&5
configure:22606: $? = 0
configure:22606: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:21: error: expected expression before ')' token
if (sizeof ((size_t)))
                    ^
configure:22606: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((size_t)))
> return 0;
> ;
> return 0;
> }
configure:22606: result: yes
configure:22617: checking for ssize_t
configure:22617: gcc -c conftest.c >&5
configure:22617: $? = 0
configure:22617: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:22: error: expected expression before ')' token
if (sizeof ((ssize_t)))
                     ^
configure:22617: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((ssize_t)))
> return 0;
> ;
> return 0;
> }
configure:22617: result: yes
configure:22628: checking for ptrdiff_t
configure:22628: gcc -c conftest.c >&5
configure:22628: $? = 0
configure:22628: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:24: error: expected expression before ')' token
if (sizeof ((ptrdiff_t)))
                       ^
configure:22628: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((ptrdiff_t)))
> return 0;
> ;
> return 0;
> }
configure:22628: result: yes
configure:22639: checking whether byte ordering is bigendian
configure:22654: gcc -c conftest.c >&5
conftest.c:46:9: error: unknown type name 'not'
        not a universal capable compiler
        ^
conftest.c:46:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal'
        not a universal capable compiler
              ^
conftest.c:46:15: error: unknown type name 'universal'
configure:22654: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #ifndef __APPLE_CC__
> not a universal capable compiler
> #endif
> typedef int dummy;
>
configure:22707: gcc -c conftest.c >&5
configure:22707: $? = 0
configure:22733: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:60:4: error: unknown type name 'not'
   not big endian
   ^
conftest.c:60:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian'
   not big endian
           ^
configure:22733: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <sys/types.h>
> #include <sys/param.h>
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> #if BYTE_ORDER != BIG_ENDIAN
> not big endian
> #endif
>
> ;
> return 0;
> }
configure:22893: result: no
configure:22915: checking size of char
configure:22920: gcc -o conftest conftest.c -ldl -lm >&5
configure:22920: $? = 0
configure:22920: ./conftest
configure:22920: $? = 0
configure:22934: result: 1
configure:22948: checking size of short
configure:22953: gcc -o conftest conftest.c -ldl -lm >&5
configure:22953: $? = 0
configure:22953: ./conftest
configure:22953: $? = 0
configure:22967: result: 2
configure:22981: checking size of int
configure:22986: gcc -o conftest conftest.c -ldl -lm >&5
configure:22986: $? = 0
configure:22986: ./conftest
configure:22986: $? = 0
configure:23000: result: 4
configure:23014: checking size of unsigned
configure:23019: gcc -o conftest conftest.c -ldl -lm >&5
configure:23019: $? = 0
configure:23019: ./conftest
configure:23019: $? = 0
configure:23033: result: 4
configure:23047: checking size of long
configure:23052: gcc -o conftest conftest.c -ldl -lm >&5
configure:23052: $? = 0
configure:23052: ./conftest
configure:23052: $? = 0
configure:23066: result: 8
configure:23080: checking size of long long
configure:23085: gcc -o conftest conftest.c -ldl -lm >&5
configure:23085: $? = 0
configure:23085: ./conftest
configure:23085: $? = 0
configure:23099: result: 8
configure:23113: checking size of __int64
configure:23118: gcc -o conftest conftest.c -ldl -lm >&5
conftest.c: In function 'longval':
conftest.c:84:57: error: '__int64' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (__int64)); }
                                                        ^
conftest.c:84:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:85:67: error: '__int64' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
                                                                  ^
conftest.c: In function 'main':
conftest.c:103:28: error: '__int64' undeclared (first use in this function)
  if (((long int) (sizeof (__int64))) < 0)
                           ^
configure:23118: $? = 1
configure: program exited with status 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> static long int longval () { return (long int) (sizeof (__int64)); }
> static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
> #include <stdio.h>
> #include <stdlib.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
>
> FILE *f = fopen ("conftest.val", "w");
> if (! f)
> return 1;
> if (((long int) (sizeof (__int64))) < 0)
> {
> long int i = longval ();
> if (i != ((long int) (sizeof (__int64))))
> return 1;
> fprintf (f, "%ld", i);
> }
> else
> {
> unsigned long int i = ulongval ();
> if (i != ((long int) (sizeof (__int64))))
> return 1;
> fprintf (f, "%lu", i);
> }
> /* Do not output a trailing newline, as this causes \r\n confusion
> on some platforms. */
> return ferror (f) || fclose (f) != 0;
>
> ;
> return 0;
> }
configure:23132: result: 0
configure:23146: checking size of float
configure:23151: gcc -o conftest conftest.c -ldl -lm >&5
configure:23151: $? = 0
configure:23151: ./conftest
configure:23151: $? = 0
configure:23165: result: 4
configure:23179: checking size of double
configure:23184: gcc -o conftest conftest.c -ldl -lm >&5
configure:23184: $? = 0
configure:23184: ./conftest
configure:23184: $? = 0
configure:23198: result: 8
configure:23212: checking size of long double
configure:23217: gcc -o conftest conftest.c -ldl -lm >&5
configure:23217: $? = 0
configure:23217: ./conftest
configure:23217: $? = 0
configure:23231: result: 16
configure:23344: checking size of int8_t
configure:23349: gcc -o conftest conftest.c -ldl -lm >&5
configure:23349: $? = 0
configure:23349: ./conftest
configure:23349: $? = 0
configure:23363: result: 1
configure:23377: checking size of uint8_t
configure:23382: gcc -o conftest conftest.c -ldl -lm >&5
configure:23382: $? = 0
configure:23382: ./conftest
configure:23382: $? = 0
configure:23396: result: 1
configure:23410: checking size of int_least8_t
configure:23415: gcc -o conftest conftest.c -ldl -lm >&5
configure:23415: $? = 0
configure:23415: ./conftest
configure:23415: $? = 0
configure:23429: result: 1
configure:23443: checking size of uint_least8_t
configure:23448: gcc -o conftest conftest.c -ldl -lm >&5
configure:23448: $? = 0
configure:23448: ./conftest
configure:23448: $? = 0
configure:23462: result: 1
configure:23476: checking size of int_fast8_t
configure:23481: gcc -o conftest conftest.c -ldl -lm >&5
configure:23481: $? = 0
configure:23481: ./conftest
configure:23481: $? = 0
configure:23495: result: 1
configure:23509: checking size of uint_fast8_t
configure:23514: gcc -o conftest conftest.c -ldl -lm >&5
configure:23514: $? = 0
configure:23514: ./conftest
configure:23514: $? = 0
configure:23528: result: 1
configure:23543: checking size of int16_t
configure:23548: gcc -o conftest conftest.c -ldl -lm >&5
configure:23548: $? = 0
configure:23548: ./conftest
configure:23548: $? = 0
configure:23562: result: 2
configure:23576: checking size of uint16_t
configure:23581: gcc -o conftest conftest.c -ldl -lm >&5
configure:23581: $? = 0
configure:23581: ./conftest
configure:23581: $? = 0
configure:23595: result: 2
configure:23609: checking size of int_least16_t
configure:23614: gcc -o conftest conftest.c -ldl -lm >&5
configure:23614: $? = 0
configure:23614: ./conftest
configure:23614: $? = 0
configure:23628: result: 2
configure:23642: checking size of uint_least16_t
configure:23647: gcc -o conftest conftest.c -ldl -lm >&5
configure:23647: $? = 0
configure:23647: ./conftest
configure:23647: $? = 0
configure:23661: result: 2
configure:23675: checking size of int_fast16_t
configure:23680: gcc -o conftest conftest.c -ldl -lm >&5
configure:23680: $? = 0
configure:23680: ./conftest
configure:23680: $? = 0
configure:23694: result: 8
configure:23708: checking size of uint_fast16_t
configure:23713: gcc -o conftest conftest.c -ldl -lm >&5
configure:23713: $? = 0
configure:23713: ./conftest
configure:23713: $? = 0
configure:23727: result: 8
configure:23742: checking size of int32_t
configure:23747: gcc -o conftest conftest.c -ldl -lm >&5
configure:23747: $? = 0
configure:23747: ./conftest
configure:23747: $? = 0
configure:23761: result: 4
configure:23775: checking size of uint32_t
configure:23780: gcc -o conftest conftest.c -ldl -lm >&5
configure:23780: $? = 0
configure:23780: ./conftest
configure:23780: $? = 0
configure:23794: result: 4
configure:23808: checking size of int_least32_t
configure:23813: gcc -o conftest conftest.c -ldl -lm >&5
configure:23813: $? = 0
configure:23813: ./conftest
configure:23813: $? = 0
configure:23827: result: 4
configure:23841: checking size of uint_least32_t
configure:23846: gcc -o conftest conftest.c -ldl -lm >&5
configure:23846: $? = 0
configure:23846: ./conftest
configure:23846: $? = 0
configure:23860: result: 4
configure:23874: checking size of int_fast32_t
configure:23879: gcc -o conftest conftest.c -ldl -lm >&5
configure:23879: $? = 0
configure:23879: ./conftest
configure:23879: $? = 0
configure:23893: result: 8
configure:23907: checking size of uint_fast32_t
configure:23912: gcc -o conftest conftest.c -ldl -lm >&5
configure:23912: $? = 0
configure:23912: ./conftest
configure:23912: $? = 0
configure:23926: result: 8
configure:23941: checking size of int64_t
configure:23946: gcc -o conftest conftest.c -ldl -lm >&5
configure:23946: $? = 0
configure:23946: ./conftest
configure:23946: $? = 0
configure:23960: result: 8
configure:23974: checking size of uint64_t
configure:23979: gcc -o conftest conftest.c -ldl -lm >&5
configure:23979: $? = 0
configure:23979: ./conftest
configure:23979: $? = 0
configure:23993: result: 8
configure:24007: checking size of int_least64_t
configure:24012: gcc -o conftest conftest.c -ldl -lm >&5
configure:24012: $? = 0
configure:24012: ./conftest
configure:24012: $? = 0
configure:24026: result: 8
configure:24040: checking size of uint_least64_t
configure:24045: gcc -o conftest conftest.c -ldl -lm >&5
configure:24045: $? = 0
configure:24045: ./conftest
configure:24045: $? = 0
configure:24059: result: 8
configure:24073: checking size of int_fast64_t
configure:24078: gcc -o conftest conftest.c -ldl -lm >&5
configure:24078: $? = 0
configure:24078: ./conftest
configure:24078: $? = 0
configure:24092: result: 8
configure:24106: checking size of uint_fast64_t
configure:24111: gcc -o conftest conftest.c -ldl -lm >&5
configure:24111: $? = 0
configure:24111: ./conftest
configure:24111: $? = 0
configure:24125: result: 8
configure:24140: checking size of size_t
configure:24145: gcc -o conftest conftest.c -ldl -lm >&5
configure:24145: $? = 0
configure:24145: ./conftest
configure:24145: $? = 0
configure:24159: result: 8
configure:24173: checking size of ssize_t
configure:24178: gcc -o conftest conftest.c -ldl -lm >&5
configure:24178: $? = 0
configure:24178: ./conftest
configure:24178: $? = 0
configure:24192: result: 8
configure:24206: checking size of ptrdiff_t
configure:24211: gcc -o conftest conftest.c -ldl -lm >&5
configure:24211: $? = 0
configure:24211: ./conftest
configure:24211: $? = 0
configure:24225: result: 8
configure:24243: checking size of off_t
configure:24248: gcc -o conftest conftest.c -ldl -lm >&5
configure:24248: $? = 0
configure:24248: ./conftest
configure:24248: $? = 0
configure:24262: result: 8
configure:24276: checking size of off64_t
configure:24281: gcc -o conftest conftest.c -ldl -lm >&5
conftest.c: In function 'longval':
conftest.c:119:57: error: 'off64_t' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (off64_t)); }
                                                        ^
conftest.c:119:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:120:67: error: 'off64_t' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (off64_t)); }
                                                                  ^
conftest.c: In function 'main':
conftest.c:138:28: error: 'off64_t' undeclared (first use in this function)
  if (((long int) (sizeof (off64_t))) < 0)
                           ^
configure:24281: $? = 1
configure: program exited with status 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> static long int longval () { return (long int) (sizeof (off64_t)); }
> static unsigned long int ulongval () { return (long int) (sizeof (off64_t)); }
> #include <stdio.h>
> #include <stdlib.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
>
> FILE *f = fopen ("conftest.val", "w");
> if (! f)
> return 1;
> if (((long int) (sizeof (off64_t))) < 0)
> {
> long int i = longval ();
> if (i != ((long int) (sizeof (off64_t))))
> return 1;
> fprintf (f, "%ld", i);
> }
> else
> {
> unsigned long int i = ulongval ();
> if (i != ((long int) (sizeof (off64_t))))
> return 1;
> fprintf (f, "%lu", i);
> }
> /* Do not output a trailing newline, as this causes \r\n confusion
> on some platforms. */
> return ferror (f) || fclose (f) != 0;
>
> ;
> return 0;
> }
configure:24295: result: 0
configure:24396: checking if dev_t is scalar
configure:24421: gcc -c conftest.c >&5
configure:24421: $? = 0
configure:24425: result: yes
configure:24541: checking for dmalloc library
configure:24543: result: suppressed
configure:24791: checking zlib.h usability
configure:24791: gcc -c -I/opt/zlib/include conftest.c >&5
configure:24791: $? = 0
configure:24791: result: yes
configure:24791: checking zlib.h presence
configure:24791: gcc -E -I/opt/zlib/include conftest.c
configure:24791: $? = 0
configure:24791: result: yes
configure:24791: checking for zlib.h
configure:24791: result: yes
configure:24810: checking for compress2 in -lz
configure:24843: gcc -o conftest -I/opt/zlib/include -L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
configure:24843: $? = 0
configure:24852: result: yes
configure:24872: checking for compress2
configure:24872: gcc -o conftest -I/opt/zlib/include -L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
configure:24872: $? = 0
configure:24872: result: yes
configure:25023: checking szlib.h usability
configure:25023: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25023: $? = 0
configure:25023: result: yes
configure:25023: checking szlib.h presence
configure:25023: gcc -E -I/opt/zlib/include -I/opt/szip/include conftest.c
configure:25023: $? = 0
configure:25023: result: yes
configure:25023: checking for szlib.h
configure:25023: result: yes
configure:25042: checking for SZ_BufftoBuffCompress in -lsz
configure:25075: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25075: $? = 0
configure:25084: result: yes
configure:25107: checking for szlib encoder
configure:25145: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c: In function 'main':
conftest.c:100:17: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
                exit(0);
                ^
conftest.c:100:17: warning: incompatible implicit declaration of built-in function 'exit'
conftest.c:100:17: note: include '<stdlib.h>' or provide a declaration of 'exit'
conftest.c:102:17: warning: incompatible implicit declaration of built-in function 'exit'
                exit(1);
                ^
conftest.c:102:17: note: include '<stdlib.h>' or provide a declaration of 'exit'
configure:25145: $? = 0
configure:25145: ./conftest
configure:25145: $? = 0
configure:25163: result: yes
configure:25286: checking for thread safe support
configure:25313: result: no
configure:25611: checking whether CLOCK_MONOTONIC is declared
configure:25611: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25611: $? = 0
configure:25611: result: yes
configure:25626: checking for tm_gmtoff in struct tm
configure:25649: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25649: $? = 0
configure:25653: result: yes
configure:25662: checking for global timezone variable
configure:25692: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25692: $? = 0
configure:25696: result: yes
configure:25711: checking for st_blocks in struct stat
configure:25733: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25733: $? = 0
configure:25737: result: yes
configure:25751: checking for _getvideoconfig
configure:25751: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccsNnkS7.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_getvideoconfig'
collect2: error: ld returned 1 exit status
configure:25751: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define _getvideoconfig to an innocuous variant, in case <limits.h> declares _getvideoconfig.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define _getvideoconfig innocuous__getvideoconfig
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char _getvideoconfig (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef _getvideoconfig
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char _getvideoconfig ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub__getvideoconfig || defined __stub____getvideoconfig
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return _getvideoconfig ();
> ;
> return 0;
> }
configure:25751: result: no
configure:25751: checking for gettextinfo
configure:25751: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/cc4i6cWa.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `gettextinfo'
collect2: error: ld returned 1 exit status
configure:25751: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define gettextinfo to an innocuous variant, in case <limits.h> declares gettextinfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define gettextinfo innocuous_gettextinfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char gettextinfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef gettextinfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char gettextinfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_gettextinfo || defined __stub___gettextinfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return gettextinfo ();
> ;
> return 0;
> }
configure:25751: result: no
configure:25766: checking for GetConsoleScreenBufferInfo
configure:25766: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccSBzVLg.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `GetConsoleScreenBufferInfo'
collect2: error: ld returned 1 exit status
configure:25766: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define GetConsoleScreenBufferInfo to an innocuous variant, in case <limits.h> declares GetConsoleScreenBufferInfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define GetConsoleScreenBufferInfo innocuous_GetConsoleScreenBufferInfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char GetConsoleScreenBufferInfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef GetConsoleScreenBufferInfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char GetConsoleScreenBufferInfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_GetConsoleScreenBufferInfo || defined __stub___GetConsoleScreenBufferInfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return GetConsoleScreenBufferInfo ();
> ;
> return 0;
> }
configure:25766: result: no
configure:25780: checking for _scrsize
configure:25780: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/cciTXu0i.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_scrsize'
collect2: error: ld returned 1 exit status
configure:25780: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define _scrsize to an innocuous variant, in case <limits.h> declares _scrsize.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define _scrsize innocuous__scrsize
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char _scrsize (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef _scrsize
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char _scrsize ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub__scrsize || defined __stub____scrsize
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return _scrsize ();
> ;
> return 0;
> }
configure:25780: result: no
configure:25780: checking for ioctl
configure:25780: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25780: $? = 0
configure:25780: result: yes
configure:25790: checking for struct videoconfig
configure:25811: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:110:20: error: storage size of 'w' isn't known
struct videoconfig w; w.numtextcols=0;
                   ^
configure:25811: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> /* end confdefs.h. */
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct videoconfig w; w.numtextcols=0;
> ;
> return 0;
> }
configure:25818: result: no
configure:25823: checking for struct text_info
configure:25844: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:110:18: error: storage size of 'w' isn't known
struct text_info w; w.screenwidth=0;
                 ^
configure:25844: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> /* end confdefs.h. */
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct text_info w; w.screenwidth=0;
> ;
> return 0;
> }
configure:25851: result: no
configure:25856: checking for TIOCGWINSZ
configure:25877: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25877: $? = 0
configure:25881: result: yes
configure:25889: checking for TIOCGETD
configure:25910: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25910: $? = 0
configure:25914: result: yes
configure:25928: checking for library containing clock_gettime
configure:25967: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25967: $? = 0
configure:25984: result: none required
configure:25995: checking for alarm
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for clock_gettime
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for difftime
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for fork
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:126:6: warning: conflicting types for built-in function 'fork'
char fork ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for frexpf
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:127:6: warning: conflicting types for built-in function 'frexpf'
char frexpf ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for frexpl
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:128:6: warning: conflicting types for built-in function 'frexpl'
char frexpl ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:26007: checking for gethostname
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for getpwuid
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for getrusage
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for gettimeofday
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26019: checking for lstat
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for rand_r
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for random
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for setsysinfo
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccdLPp70.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `setsysinfo'
collect2: error: ld returned 1 exit status
configure:26019: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> /* end confdefs.h. */
> /* Define setsysinfo to an innocuous variant, in case <limits.h> declares setsysinfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define setsysinfo innocuous_setsysinfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char setsysinfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef setsysinfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char setsysinfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_setsysinfo || defined __stub___setsysinfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return setsysinfo ();
> ;
> return 0;
> }
configure:26019: result: no
configure:26031: checking for signal
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for longjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for setjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for siglongjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for sigsetjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccPMRaFg.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `sigsetjmp'
collect2: error: ld returned 1 exit status
configure:26031: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> #define HAVE_SIGNAL 1
> #define HAVE_LONGJMP 1
> #define HAVE_SETJMP 1
> #define HAVE_SIGLONGJMP 1
> /* end confdefs.h. */
> /* Define sigsetjmp to an innocuous variant, in case <limits.h> declares sigsetjmp.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define sigsetjmp innocuous_sigsetjmp
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char sigsetjmp (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef sigsetjmp
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char sigsetjmp ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_sigsetjmp || defined __stub___sigsetjmp
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return sigsetjmp ();
> ;
> return 0;
> }
configure:26031: result: no
configure:26031: checking for sigprocmask
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26043: checking for snprintf
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:141:6: warning: conflicting types for built-in function 'snprintf'
char snprintf ();
     ^
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for srandom
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for strdup
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:143:6: warning: conflicting types for built-in function 'strdup'
char strdup ();
     ^
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for symlink
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for system
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26055: checking for tmpfile
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for asprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for vasprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for vsnprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:149:6: warning: conflicting types for built-in function 'vsnprintf'
char vsnprintf ();
     ^
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for waitpid
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26068: checking for an ANSI C-conforming const
configure:26142: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26142: $? = 0
configure:26149: result: yes
configure:26157: checking for inline
configure:26173: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26173: $? = 0
configure:26181: result: inline
configure:26200: checking for __attribute__ extension
configure:26221: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26221: $? = 0
configure:26225: result: yes
configure:26233: checking for __func__ extension
configure:26254: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26254: $? = 0
configure:26258: result: yes
configure:26265: checking for __FUNCTION__ extension
configure:26286: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26286: $? = 0
configure:26290: result: yes
configure:26297: checking for C99 designated initialization support
configure:26326: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26326: $? = 0
configure:26330: result: yes
configure:26343: checking how to print long long
configure:26370: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26370: $? = 0
configure:26370: ./conftest
configure:26370: $? = 0
configure:26381: result: %ld and %lu
configure:26393: checking Threads support system scope
configure:26423: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26423: $? = 0
configure:26423: ./conftest
configure:26423: $? = 0
configure:26439: result: yes
configure:26450: checking for debug flags
configure:26483: result: none
configure:26503: checking whether function stack tracking is enabled
configure:26522: result: no
configure:26530: checking whether metadata trace file code is enabled
configure:26549: result: no
configure:26559: checking for API tracing
configure:26584: result: no
configure:26596: checking for instrumented library
configure:26623: result: no
configure:26634: checking whether to clear file buffers
configure:26645: result: yes
configure:26665: checking whether a memory checking tool will be used
configure:26684: result: no
configure:26803: checking for parallel support files
configure:26815: result: provided by compiler
configure:26820: checking whether a simple MPI-IO C program can be linked
configure:26842: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:135:17: fatal error: mpi.h: No such file or directory
compilation terminated.
configure:26842: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> #define HAVE_SIGNAL 1
> #define HAVE_LONGJMP 1
> #define HAVE_SETJMP 1
> #define HAVE_SIGLONGJMP 1
> #define HAVE_SIGPROCMASK 1
> #define HAVE_SNPRINTF 1
> #define HAVE_SRANDOM 1
> #define HAVE_STRDUP 1
> #define HAVE_SYMLINK 1
> #define HAVE_SYSTEM 1
> #define HAVE_TMPFILE 1
> #define HAVE_ASPRINTF 1
> #define HAVE_VASPRINTF 1
> #define HAVE_VSNPRINTF 1
> #define HAVE_WAITPID 1
> #define HAVE_ATTRIBUTE 1
> #define HAVE_C99_FUNC 1
> #define HAVE_FUNCTION 1
> #define HAVE_C99_DESIGNATED_INITIALIZER 1
> #define PRINTF_LL_WIDTH "l"
> #define SYSTEM_SCOPE_THREADS 1
> #define CLEAR_MEMORY 1
> /* end confdefs.h. */
> #include <mpi.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> MPI_Init(0, (void *)0);
> MPI_File_open(0, (void *)0, 0, 0, (void *)0);
> ;
> return 0;
> }
configure:26846: result: no
configure:26848: error: unable to link a simple MPI-IO C program

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-none
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_dummy_main=none
ac_cv_fc_libs=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath'
ac_cv_fc_mangling='lower case, underscore, no extra underscore'
ac_cv_fc_srcext_f90=none
ac_cv_fortran_dummy_main=none
ac_cv_func_GetConsoleScreenBufferInfo=no
ac_cv_func__getvideoconfig=no
ac_cv_func__scrsize=no
ac_cv_func_alarm=yes
ac_cv_func_asprintf=yes
ac_cv_func_clock_gettime=yes
ac_cv_func_compress2=yes
ac_cv_func_difftime=yes
ac_cv_func_dlopen=no
ac_cv_func_fork=yes
ac_cv_func_frexpf=yes
ac_cv_func_frexpl=yes
ac_cv_func_fseeko=yes
ac_cv_func_ftello=yes
ac_cv_func_gethostname=yes
ac_cv_func_getpwuid=yes
ac_cv_func_getrusage=yes
ac_cv_func_gettextinfo=no
ac_cv_func_gettimeofday=yes
ac_cv_func_ioctl=yes
ac_cv_func_longjmp=yes
ac_cv_func_lstat=yes
ac_cv_func_rand_r=yes
ac_cv_func_random=yes
ac_cv_func_setjmp=yes
ac_cv_func_setsysinfo=no
ac_cv_func_shl_load=no
ac_cv_func_siglongjmp=yes
ac_cv_func_signal=yes
ac_cv_func_sigprocmask=yes
ac_cv_func_sigsetjmp=no
ac_cv_func_snprintf=yes
ac_cv_func_srandom=yes
ac_cv_func_strdup=yes
ac_cv_func_symlink=yes
ac_cv_func_system=yes
ac_cv_func_tmpfile=yes
ac_cv_func_vasprintf=yes
ac_cv_func_vsnprintf=yes
ac_cv_func_waitpid=yes
ac_cv_have_decl_CLOCK_MONOTONIC=yes
ac_cv_header_dirent_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_features_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_io_h=no
ac_cv_header_mach_mach_time_h=no
ac_cv_header_memory_h=yes
ac_cv_header_setjmp_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stddef_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_ioctl_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_socket_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_timeb_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_szlib_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_header_winsock2_h=no
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-pc-none
ac_cv_lib_dl_dlopen=yes
ac_cv_lib_dld_shl_load=no
ac_cv_lib_m_ceil=yes
ac_cv_lib_sz_SZ_BufftoBuffCompress=yes
ac_cv_lib_z_compress2=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_TR=/usr/bin/tr
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AR=ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_PERL=perl
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_fc_v=-v
ac_cv_prog_make_make_set=yes
ac_cv_search_clock_gettime='none required'
ac_cv_sizeof___int64=0
ac_cv_sizeof_char=1
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int16_t=2
ac_cv_sizeof_int32_t=4
ac_cv_sizeof_int64_t=8
ac_cv_sizeof_int8_t=1
ac_cv_sizeof_int=4
ac_cv_sizeof_int_fast16_t=8
ac_cv_sizeof_int_fast32_t=8
ac_cv_sizeof_int_fast64_t=8
ac_cv_sizeof_int_fast8_t=1
ac_cv_sizeof_int_least16_t=2
ac_cv_sizeof_int_least32_t=4
ac_cv_sizeof_int_least64_t=8
ac_cv_sizeof_int_least8_t=1
ac_cv_sizeof_long=8
ac_cv_sizeof_long_double=16
ac_cv_sizeof_long_long=8
ac_cv_sizeof_off64_t=0
ac_cv_sizeof_off_t=8
ac_cv_sizeof_ptrdiff_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=8
ac_cv_sizeof_ssize_t=8
ac_cv_sizeof_uint16_t=2
ac_cv_sizeof_uint32_t=4
ac_cv_sizeof_uint64_t=8
ac_cv_sizeof_uint8_t=1
ac_cv_sizeof_uint_fast16_t=8
ac_cv_sizeof_uint_fast32_t=8
ac_cv_sizeof_uint_fast64_t=8
ac_cv_sizeof_uint_fast8_t=1
ac_cv_sizeof_uint_least16_t=2
ac_cv_sizeof_uint_least32_t=4
ac_cv_sizeof_uint_least64_t=8
ac_cv_sizeof_uint_least8_t=1
ac_cv_sizeof_unsigned=4
ac_cv_sys_file_offset_bits=no
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
hdf5_cv_host=x86_64-pc-none
hdf5_cv_printf_ll=l
hdf5_cv_system_scope_threads=yes
hdf5_cv_szlib_can_encode=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=unknown
lt_cv_dlopen=dlopen
lt_cv_dlopen_libs=-ldl
lt_cv_dlopen_self=yes
lt_cv_dlopen_self_static=no
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_FC=no
lt_cv_prog_gnu_ld=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $lib[^ ]*$$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* $.*$$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* $.*$$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing aclocal-1.14'
ADD_PARALLEL_FILES=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
AM_CXXFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_FCFLAGS=''
AM_LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
AM_MAKEFLAGS=''
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoconf'
AUTOHEADER='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoheader'
AUTOMAKE='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing automake-1.14'
AWK='gawk'
BUILD_ALL_CONDITIONAL_FALSE=''
BUILD_ALL_CONDITIONAL_TRUE=''
BUILD_CXX_CONDITIONAL_FALSE=''
BUILD_CXX_CONDITIONAL_TRUE=''
BUILD_FORTRAN_CONDITIONAL_FALSE=''
BUILD_FORTRAN_CONDITIONAL_TRUE=''
BUILD_HDF5_HL_CONDITIONAL_FALSE=''
BUILD_HDF5_HL_CONDITIONAL_TRUE=''
BUILD_PARALLEL_CONDITIONAL_FALSE=''
BUILD_PARALLEL_CONDITIONAL_TRUE=''
BUILD_SHARED_SZIP_CONDITIONAL_FALSE='#'
BUILD_SHARED_SZIP_CONDITIONAL_TRUE=''
BYTESEX=''
CC='gcc'
CCDEPMODE='depmode=gcc3'
CC_VERSION=''
CFLAGS=' '
CLEARFILEBUF='yes'
CODESTACK='no'
CONFIG_DATE=''
CONFIG_MODE='production'
CONFIG_USER=''
CPP='gcc -E'
CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
CXX='no'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=' '
CXX_VERSION=''
CYGPATH_W='echo'
DEBUG_PKG=''
DEFAULT_API_VERSION=''
DEFS=''
DEPDIR='.deps'
DEPRECATED_SYMBOLS=''
DIRECT_VFD='no'
DIRECT_VFD_CONDITIONAL_FALSE=''
DIRECT_VFD_CONDITIONAL_TRUE=''
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
EXTERNAL_FILTERS='deflate(zlib),szip(encoder)'
F9XMODEXT='mod'
F9XMODFLAG='-I'
F9XSUFFIXFLAG=''
FC2003=''
FC='gfortran'
FCFLAGS='-I. '
FCFLAGS_f90=''
FCLIBS=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath'
FC_VERSION=''
FGREP='/usr/bin/grep -F'
FORTRAN_2003_CONDITIONAL_F_FALSE='#'
FORTRAN_2003_CONDITIONAL_F_TRUE=''
FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#'
FORTRAN_HAVE_C_SIZEOF_FALSE='#'
FORTRAN_HAVE_C_SIZEOF_TRUE=''
FORTRAN_HAVE_SIZEOF_FALSE='#'
FORTRAN_HAVE_SIZEOF_TRUE=''
FORTRAN_HAVE_STORAGE_SIZE_FALSE='#'
FORTRAN_HAVE_STORAGE_SIZE_TRUE=''
FORTRAN_SHARED_CONDITIONAL_FALSE='#'
FORTRAN_SHARED_CONDITIONAL_TRUE=''
FSEARCH_DIRS=''
GREP='/usr/bin/grep'
H5_CFLAGS=' '
H5_CPPFLAGS=' -DNDEBUG -UH5_DEBUG_API'
H5_CXXFLAGS=' '
H5_FCFLAGS=' '
H5_FORTRAN_SHARED='yes'
H5_LDFLAGS=''
H5_VERSION=''
HADDR_T=''
HAVE_DMALLOC='no'
HAVE_FORTRAN_2003='yes'
HAVE_PTHREAD=''
HAVE_SHARED_CONDITIONAL_FALSE=''
HAVE_SHARED_CONDITIONAL_TRUE=''
HDF5_HL='yes'
HDF5_INTERFACES=' fortran'
HDF_CXX='no'
HDF_FORTRAN2003='yes'
HDF_FORTRAN='yes'
HID_T=''
HL='hl'
HL_FOR=''
HSIZE_T=''
HSSIZE_T=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTRUMENT='no'
INSTRUMENT_LIBRARY='no'
LD='/usr/bin/ld'
LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
LIBOBJS=''
LIBS='-lsz -lz -ldl -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LL_PATH='/opt/szip/lib'
LN_S='ln -s'
LTLIBOBJS=''
LT_STATIC_EXEC=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/usr/bin/mkdir -p'
MPE='no'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJECT_NAMELEN_DEFAULT_F=''
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='hdf5'
PACKAGE_BUGREPORT='help@hdfgroup.org'
PACKAGE_NAME='HDF5'
PACKAGE_STRING='HDF5 1.8.15'
PACKAGE_TARNAME='hdf5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8.15'
PARALLEL='yes'
PATH_SEPARATOR=':'
PERL='perl'
RANLIB='ranlib'
ROOT=''
RUNPARALLEL=''
RUNSERIAL=''
R_INTEGER=''
R_LARGE=''
SEARCH=''
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
SIZE_T=''
STATIC_EXEC='no'
STATIC_SHARED=''
STRICT_FORMAT_CHECKS=''
STRIP='strip'
TESTPARALLEL=''
THREADSAFE='no'
TIME=''
TR='/usr/bin/tr'
TRACE_API='no'
UNAME_INFO='Linux turing 4.0.4-2-ARCH #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015 x86_64 GNU/Linux'
USE_FILTER_DEFLATE='yes'
USE_FILTER_SZIP='yes'
USE_PLUGINS_CONDITIONAL_FALSE='#'
USE_PLUGINS_CONDITIONAL_TRUE=''
USINGMEMCHECKER='no'
VERSION='1.8.15'
WORDS_BIGENDIAN=''
ac_ct_AR=''
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_FC='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-none'
build_alias='x86_64'
build_cpu='x86_64'
build_os='none'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared='no'
enable_static='yes'
exec_prefix='NONE'
host='x86_64-pc-none'
host_alias=''
host_cpu='x86_64'
host_os='none'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/opt/hdf5'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.15"
#define PACKAGE_STRING "HDF5 1.8.15"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.15"
#define FC_FUNC(name,NAME) name ## _
#define FC_FUNC_(name,NAME) name ## _
#define INCLUDE_HL 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_DIRENT_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 0
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_SZLIB_H 1
#define HAVE_LIBSZ 1
#define HAVE_FILTER_SZIP 1
#define HAVE_TM_GMTOFF 1
#define HAVE_TIMEZONE 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_CLOCK_GETTIME 1
#define HAVE_DIFFTIME 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_ASPRINTF 1
#define HAVE_VASPRINTF 1
#define HAVE_VSNPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1

configure: exit 1

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

Mohamad_Chaarawi · June 4, 2015, 1:54pm

I also noticed in your config log that the simple mpi program is being built with gcc not mpicc:

configure:26842: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:135:17: fatal error: mpi.h: No such file or directory
compilation terminated.

So you need to make sure that your settings here:

export F77=$MPICH/mpifort
export F90=$MPICH/mpifort
export F9X=$MPICH/mpifort
export CC=$MPICH/mpicc

actually resolve to something, since config.log says you are not building with the mpi build wrappers.

Mohamad

···

-----Original Message-----
From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf Of Mohamad Chaarawi
Sent: Thursday, June 04, 2015 8:45 AM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] [problem configuring parallel installation of HDF5]

Could you add mpich to your $LD_LIBRARY_PATH and $PATH and try again?

export PATH=/mpich/install/path/bin/:$PATH
export LD_LIBRARY_PATH=/mpich/install/path/lib:$LD_LIBRARY_PATH

Thanks,
Mohamad

-----Original Message-----
From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf Of Maxim Abalenkov
Sent: Thursday, June 04, 2015 8:26 AM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] [problem configuring parallel installation of HDF5]

Hello Pierre,

I have tried to set the CPPFLAGS to /usr/include and /opt/mpich/include, where MPICH is installed. I have also created a soft link /usr/include/mpi.h —> /opt/mpich/include/mpi.h. Unfortunately, the error persists.

—
Kind regards,
Maxim Abalenkov

On Jun 4, 2015, at 2:03 PM, Pierre de Buyl <pierre.debuyl@chem.kuleuven.be> wrote:

Can you try with

export CPPFLAGS="-I/usr/include"

(or the appropriate path the the mpi.h headers)?

The complaint by the compiler is about finding "mpi.h".

Regards,

Pierre

On Thu, Jun 04, 2015 at 11:42:22AM +0100, Maxim Abalenkov wrote:

Dear all,

I experience a problem configuring a parallel installation of HDF5 version
1.8.15. I would like to configure it with Intel Fortran compiler 14.0.0
20130728 and MPICH 3.1.4 on Arch Linux 64-bit. As a test I have done a
sequential configuration, that worked. The environment flags I have used
were:

export F77=$MPICH/mpifort
export F90=$MPICH/mpifort
export F9X=$MPICH/mpifort
export CC=$MPICH/mpicc
export FFLAGS="-I/usr/include/"
export CFLAGS="-I/usr/include/"
export LDFLAGS="-L/usr/lib/"

The configure command was launched with the following switches:

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
               --with-zlib=/opt/zlib/include,/opt/zlib/lib \
               --with-szlib=/opt/szip/include,/opt/szip/lib \
               --enable-production --build=x86_64

The configure command for parallel HDF has an additional switch
(--enable-parallel):

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
               --with-zlib=/opt/zlib/include,/opt/zlib/lib \
               --with-szlib=/opt/szip/include,/opt/szip/lib \
               --enable-production --build=x86_64 \
               --enable-parallel

Parallel configuration breaks with the following error message:

checking whether a simple MPI-IO C program can be linked... no
configure: error: unable to link a simple MPI-IO C program

As a test I have tried to compile and run "sample_mpio.f90" provided in the
README_parallel file:

mpifort sample_mpio.f90 -o sample_mpio
mpiexec -n 4 ./sample_mpio

The sample program compiles and runs perfectly fine.

Running configuration script with the superuser privileges is necessary,
since otherwise I receive an access denied messages in the middle of the
configuration and configure script fails. Any guidance or hints would be
most welcome. The config.log file is attached.

--
Kind regards,
Maxim Abalenkov

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by HDF5 configure 1.8.15, which was
generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure --prefix=/opt/hdf5 --enable-fortran --enable-fortran2003 --with-zlib=/opt/zlib/include,/opt/zlib/lib --with-szlib=/opt/szip/include,/opt/szip/lib --enable-production --build=x86_64 --enable-parallel

## --------- ##
## Platform. ##
## --------- ##

hostname = turing
uname -m = x86_64
uname -r = 4.0.4-2-ARCH
uname -s = Linux
uname -v = #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /opt/mpich/bin
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/mpirt/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64_mic
PATH: /opt/intel/composer_xe_2013_sp1.0.080/debugger/gui/intel64
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/lib/jvm/default/bin
PATH: /usr/lib32/jvm/default/bin
PATH: /usr/bin/site_perl
PATH: /usr/bin/vendor_perl
PATH: /usr/bin/core_perl

## ----------- ##
## Core tests. ##
## ----------- ##

configure:3072: checking for a BSD-compatible install
configure:3140: result: /usr/bin/install -c
configure:3151: checking whether build environment is sane
configure:3206: result: yes
configure:3357: checking for a thread-safe mkdir -p
configure:3396: result: /usr/bin/mkdir -p
configure:3403: checking for gawk
configure:3419: found /usr/bin/gawk
configure:3430: result: gawk
configure:3441: checking whether make sets $(MAKE)
configure:3463: result: yes
configure:3492: checking whether make supports nested variables
configure:3509: result: yes
configure:3645: checking whether make supports nested variables
configure:3662: result: yes
configure:3685: checking whether to enable maintainer-specific portions of Makefiles
configure:3694: result: no
configure:3738: checking build system type
configure:3752: result: x86_64-pc-none
configure:3772: checking host system type
configure:3785: result: x86_64-pc-none
configure:3853: checking shell variables initial values
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as_var=MAILPATH
bindir='${exec_prefix}/bin'
build=x86_64-pc-none
build_alias=x86_64
build_cpu=x86_64
build_os=none
build_vendor=pc
cache_file=/dev/null
cross_compiling=no
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_fortran=yes
enable_fortran2003=yes
enable_parallel=yes
enable_production=yes
exec_prefix=NONE
host=x86_64-pc-none
host_cpu=x86_64
host_os=none
host_vendor=pc
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
no_create=
no_recursion=
oldincludedir=/usr/include
pdfdir='${docdir}'
prefix=/opt/hdf5
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
psdir='${docdir}'
saved_user_CFLAGS=
saved_user_CPPFLAGS=
saved_user_CXXFLAGS=
saved_user_FCFLAGS=
saved_user_LDFLAGS=
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
silent=
site=
srcdir=.
subdirs=
sysconfdir='${prefix}/etc'
target=
verbose=
with_szlib=/opt/szip/include,/opt/szip/lib
with_zlib=/opt/zlib/include,/opt/zlib/lib
x_includes=NONE
x_libraries=NONE
configure:3856: result: done
configure:3905: checking if basename works
configure:3911: result: yes
configure:3916: checking if xargs works
configure:3922: result: yes
configure:3930: checking for cached host
configure:3937: result: none
configure:3997: checking for config x86_64-pc-none
configure:4005: result: no
configure:3997: checking for config x86_64-pc-none
configure:4005: result: no
configure:3997: checking for config pc-none
configure:4005: result: no
configure:3997: checking for config pc-none
configure:4005: result: no
configure:3997: checking for config x86_64-none
configure:4005: result: no
configure:3997: checking for config x86_64-none
configure:4005: result: no
configure:3997: checking for config x86_64-pc
configure:4005: result: no
configure:3997: checking for config none
configure:4005: result: no
configure:3997: checking for config none
configure:4005: result: no
configure:3997: checking for config pc
configure:4005: result: no
configure:3997: checking for config x86_64
configure:4005: result: no
configure:4017: checking for config ./config/site-specific/host-turing
configure:4025: result: no
configure:4102: checking for gcc
configure:4118: found /usr/bin/gcc
configure:4129: result: gcc
configure:4358: checking for C compiler version
configure:4367: gcc --version >&5
gcc (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4378: $? = 0
configure:4367: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:4378: $? = 0
configure:4367: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4378: $? = 1
configure:4367: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:4378: $? = 1
configure:4398: checking whether the C compiler works
configure:4420: gcc conftest.c >&5
configure:4424: $? = 0
configure:4472: result: yes
configure:4475: checking for C compiler default output file name
configure:4477: result: a.out
configure:4483: checking for suffix of executables
configure:4490: gcc -o conftest conftest.c >&5
configure:4494: $? = 0
configure:4516: result:
configure:4538: checking whether we are cross compiling
configure:4546: gcc -o conftest conftest.c >&5
configure:4550: $? = 0
configure:4557: ./conftest
configure:4561: $? = 0
configure:4576: result: no
configure:4581: checking for suffix of object files
configure:4603: gcc -c conftest.c >&5
configure:4607: $? = 0
configure:4628: result: o
configure:4632: checking whether we are using the GNU C compiler
configure:4651: gcc -c conftest.c >&5
configure:4651: $? = 0
configure:4660: result: yes
configure:4669: checking whether gcc accepts -g
configure:4689: gcc -c -g conftest.c >&5
configure:4689: $? = 0
configure:4730: result: yes
configure:4747: checking for gcc option to accept ISO C89
configure:4810: gcc -c conftest.c >&5
configure:4810: $? = 0
configure:4823: result: none needed
configure:4848: checking whether gcc understands -c and -o together
configure:4870: gcc -c conftest.c -o conftest2.o
configure:4873: $? = 0
configure:4870: gcc -c conftest.c -o conftest2.o
configure:4873: $? = 0
configure:4885: result: yes
configure:4913: checking for style of include used by make
configure:4941: result: GNU
configure:4967: checking dependency style of gcc
configure:5078: result: gcc3
configure:5100: checking if unsupported combinations of configure options are allowed
configure:5110: result: no
configure:5125: checking if Fortran interface enabled
configure:5143: checking if Fortran 2003 interface enabled
configure:5241: checking for gfortran
configure:5257: found /usr/bin/gfortran
configure:5268: result: gfortran
configure:5294: checking for Fortran compiler version
configure:5303: gfortran --version >&5
GNU Fortran (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5314: $? = 0
configure:5303: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:5314: $? = 0
configure:5303: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5314: $? = 1
configure:5303: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:5314: $? = 1
configure:5323: checking whether we are using the GNU Fortran compiler
configure:5336: gfortran -c conftest.F >&5
configure:5336: $? = 0
configure:5345: result: yes
configure:5351: checking whether gfortran accepts -g
configure:5362: gfortran -c -g conftest.f >&5
configure:5362: $? = 0
configure:5370: result: yes
configure:5403: checking for Fortran flag to compile .f90 files
configure:5423: gfortran -c conftest.f90 >&5
configure:5423: $? = 0
configure:5432: result: none
configure:5567: checking for Fortran compiler version
configure:5576: gfortran --version >&5
GNU Fortran (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5587: $? = 0
configure:5576: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:5587: $? = 0
configure:5576: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5587: $? = 1
configure:5576: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:5587: $? = 1
configure:5596: checking whether we are using the GNU Fortran compiler
configure:5618: result: yes
configure:5624: checking whether gfortran accepts -g
configure:5643: result: yes
configure:5672: checking what gfortran does with modules
configure:5725: checking how gfortran finds modules
configure:5737: gfortran -Iconftestdir -c conftest.f90 1>&5
configure:5740: $? = 0
configure:5778: checking how to get verbose linking output from gfortran
configure:5788: gfortran -c -I. conftest.f90 >&5
configure:5788: $? = 0
configure:5806: gfortran -o conftest -I. -v conftest.f90
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Thread model: posix
gcc version 5.1.0 (GCC)
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I . -quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/cc5B0Jtw.s
GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I . --64 -o /tmp/ccK4bt2n.o /tmp/cc5B0Jtw.s
GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.0
Reading specs from /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccWKKPBf.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. /tmp/ccK4bt2n.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
configure:5889: result: -v
configure:5891: checking for Fortran libraries of gfortran
configure:5914: gfortran -o conftest -I. -v conftest.f90
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Thread model: posix
gcc version 5.1.0 (GCC)
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I . -quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/ccyHgq0y.s
GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I . --64 -o /tmp/cci78AFq.o /tmp/ccyHgq0y.s
GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.0
Reading specs from /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwIrIli.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. /tmp/cci78AFq.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
configure:6110: result: -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath
configure:6126: checking for dummy main to link with Fortran libraries
configure:6160: gcc -o conftest conftest.c -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6160: $? = 0
configure:6205: result: none
configure:6237: checking for Fortran name-mangling scheme
configure:6250: gfortran -c -I. conftest.f90 >&5
configure:6250: $? = 0
configure:6291: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
/tmp/ccY01qfA.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `foobar'
collect2: error: ld returned 1 exit status
configure:6291: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> /* end confdefs.h. */
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char foobar ();
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return foobar ();
> ;
> return 0;
> }
configure:6291: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6291: $? = 0
configure:6349: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6349: $? = 0
configure:6391: result: lower case, underscore, no extra underscore
configure:6460: checking if Fortran compiler supports intrinsic SIZEOF
configure:6469: gfortran -o conftest -I. conftest.f90 >&5
configure:6469: $? = 0
configure:6470: result: yes
configure:6484: checking if Fortran compiler supports intrinsic C_SIZEOF
configure:6496: gfortran -o conftest -I. conftest.f90 >&5
configure:6496: $? = 0
configure:6497: result: yes
configure:6511: checking if Fortran compiler supports intrinsic STORAGE_SIZE
configure:6522: gfortran -o conftest -I. conftest.f90 >&5
configure:6522: $? = 0
configure:6523: result: yes
configure:6539: checking if Fortran default REAL is DOUBLE PRECISION
configure:6566: gfortran -c -I. conftest.f90 >&5
configure:6566: $? = 0
configure:6567: result: no
configure:6582: checking if Fortran compiler version compatible with Fortran 2003 HDF
configure:6601: gfortran -o conftest -I. conftest.f90 >&5
configure:6601: $? = 0
configure:6602: result: yes
configure:6736: checking for g++
configure:6752: found /usr/bin/g++
configure:6763: result: g++
configure:6790: checking for C++ compiler version
configure:6799: g++ --version >&5
g++ (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6810: $? = 0
configure:6799: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:6810: $? = 0
configure:6799: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:6810: $? = 1
configure:6799: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:6810: $? = 1
configure:6814: checking whether we are using the GNU C++ compiler
configure:6841: g++ -c conftest.cpp >&5
configure:6841: $? = 0
configure:6850: result: yes
configure:6859: checking whether g++ accepts -g
configure:6887: g++ -c -g conftest.cpp >&5
configure:6887: $? = 0
configure:6944: result: yes
configure:6969: checking dependency style of g++
configure:7080: result: gcc3
configure:7100: checking how to run the C++ preprocessor
configure:7127: g++ -E conftest.cpp
configure:7127: $? = 0
configure:7141: g++ -E conftest.cpp
conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7141: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:7166: result: g++ -E
configure:7186: g++ -E conftest.cpp
configure:7186: $? = 0
configure:7200: g++ -E conftest.cpp
conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7200: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:7229: checking if c++ interface enabled
configure:7388: result: no
configure:7409: checking if high level library is enabled
configure:7446: checking for perl
configure:7462: found /usr/bin/perl
configure:7473: result: perl
configure:7496: checking for ar
configure:7512: found /usr/bin/ar
configure:7523: result: ar
configure:7542: checking whether make sets $(MAKE)
configure:7564: result: yes
configure:7581: checking for tr
configure:7599: found /usr/bin/tr
configure:7611: result: /usr/bin/tr
configure:7630: checking if srcdir= and time commands work together
configure:7641: result: no
configure:7693: checking if shared Fortran libraries are supported
configure:7727: result: yes
configure:7812: checking how to print strings
configure:7839: result: printf
configure:7860: checking for a sed that does not truncate output
configure:7924: result: /usr/bin/sed
configure:7942: checking for grep that handles long lines and -e
configure:8000: result: /usr/bin/grep
configure:8005: checking for egrep
configure:8067: result: /usr/bin/grep -E
configure:8072: checking for fgrep
configure:8134: result: /usr/bin/grep -F
configure:8169: checking for ld used by gcc
configure:8236: result: /usr/bin/ld
configure:8243: checking if the linker (/usr/bin/ld) is GNU ld
configure:8258: result: yes
configure:8270: checking for BSD- or MS-compatible name lister (nm)
configure:8319: result: /usr/bin/nm -B
configure:8449: checking the name lister (/usr/bin/nm -B) interface
configure:8456: gcc -c conftest.c >&5
configure:8459: /usr/bin/nm -B "conftest.o"
configure:8462: output
0000000000000000 B some_variable
configure:8469: result: BSD nm
configure:8472: checking whether ln -s works
configure:8476: result: yes
configure:8484: checking the maximum length of command line arguments
configure:8614: result: 1572864
configure:8631: checking whether the shell understands some XSI constructs
configure:8641: result: yes
configure:8645: checking whether the shell understands "+="
configure:8651: result: yes
configure:8686: checking how to convert x86_64-pc-none file names to x86_64-pc-none format
configure:8726: result: func_convert_file_noop
configure:8733: checking how to convert x86_64-pc-none file names to toolchain format
configure:8753: result: func_convert_file_noop
configure:8760: checking for /usr/bin/ld option to reload object files
configure:8767: result: -r
configure:8841: checking for objdump
configure:8857: found /usr/bin/objdump
configure:8868: result: objdump
configure:8900: checking how to recognize dependent libraries
configure:9102: result: unknown
configure:9187: checking for dlltool
configure:9217: result: no
configure:9247: checking how to associate runtime and link libraries
configure:9274: result: printf %s\n
configure:9398: checking for archiver @FILE support
configure:9423: gcc -c conftest.c >&5
configure:9423: $? = 0
configure:9426: ar cru libconftest.a @conftest.lst >&5
configure:9429: $? = 0
configure:9434: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:9437: $? = 1
configure:9449: result: @
configure:9507: checking for strip
configure:9523: found /usr/bin/strip
configure:9534: result: strip
configure:9606: checking for ranlib
configure:9622: found /usr/bin/ranlib
configure:9633: result: ranlib
configure:9735: checking command to parse /usr/bin/nm -B output from gcc object
configure:9855: gcc -c conftest.c >&5
configure:9858: $? = 0
configure:9862: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:9865: $? = 0
configure:9931: gcc -o conftest conftest.c conftstm.o >&5
configure:9934: $? = 0
configure:9972: result: ok
configure:10009: checking for sysroot
configure:10039: result: no
configure:10303: checking for mt
configure:10333: result: no
configure:10353: checking if : is a manifest tool
configure:10359: : '-?'
configure:10367: result: no
configure:11017: checking how to run the C preprocessor
configure:11048: gcc -E conftest.c
configure:11048: $? = 0
configure:11062: gcc -E conftest.c
conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:11062: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:11087: result: gcc -E
configure:11107: gcc -E conftest.c
configure:11107: $? = 0
configure:11121: gcc -E conftest.c
conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:11121: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:11150: checking for ANSI C header files
configure:11178: gcc -c conftest.c >&5
configure:11178: $? = 0
configure:11251: gcc -o conftest conftest.c >&5
configure:11251: $? = 0
configure:11251: ./conftest
configure:11251: $? = 0
configure:11262: result: yes
configure:11275: checking for sys/types.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for sys/stat.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for stdlib.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for string.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for memory.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for strings.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for inttypes.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for stdint.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for unistd.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11289: checking for dlfcn.h
configure:11289: gcc -c conftest.c >&5
configure:11289: $? = 0
configure:11289: result: yes
configure:11504: checking for objdir
configure:11519: result: .libs
configure:11786: checking if gcc supports -fno-rtti -fno-exceptions
configure:11804: gcc -c -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:11808: $? = 0
configure:11821: result: no
configure:12148: checking for gcc option to produce PIC
configure:12155: result: -fPIC -DPIC
configure:12163: checking if gcc PIC flag -fPIC -DPIC works
configure:12181: gcc -c -fPIC -DPIC -DPIC conftest.c >&5
configure:12185: $? = 0
configure:12198: result: yes
configure:12227: checking if gcc static flag -static works
configure:12255: result: yes
configure:12270: checking if gcc supports -c -o file.o
configure:12291: gcc -c -o out/conftest2.o conftest.c >&5
configure:12295: $? = 0
configure:12317: result: yes
configure:12325: checking if gcc supports -c -o file.o
configure:12372: result: yes
configure:12405: checking whether the gcc linker (/usr/bin/ld) supports shared libraries
configure:13574: result: yes
configure:13611: checking whether -lc should be explicitly linked in
configure:13619: gcc -c conftest.c >&5
configure:13622: $? = 0
configure:13637: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
configure:13640: $? = 0
configure:13654: result: no
configure:13814: checking dynamic linker characteristics
configure:14555: result: no
configure:14662: checking how to hardcode library paths into programs
configure:14687: result: immediate
configure:14789: checking for shl_load
configure:14789: gcc -o conftest conftest.c >&5
/tmp/cciXRyKJ.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `shl_load'
collect2: error: ld returned 1 exit status
configure:14789: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
> /* Define shl_load to an innocuous variant, in case <limits.h> declares shl_load.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define shl_load innocuous_shl_load
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char shl_load (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef shl_load
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char shl_load ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_shl_load || defined __stub___shl_load
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return shl_load ();
> ;
> return 0;
> }
configure:14789: result: no
configure:14793: checking for shl_load in -ldld
configure:14826: gcc -o conftest conftest.c -ldld >&5
/usr/bin/ld: cannot find -ldld
collect2: error: ld returned 1 exit status
configure:14826: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char shl_load ();
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return shl_load ();
> ;
> return 0;
> }
configure:14835: result: no
configure:14840: checking for dlopen
configure:14840: gcc -o conftest conftest.c >&5
/tmp/ccU8m5gO.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `dlopen'
collect2: error: ld returned 1 exit status
configure:14840: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
> /* Define dlopen to an innocuous variant, in case <limits.h> declares dlopen.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define dlopen innocuous_dlopen
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char dlopen (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef dlopen
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char dlopen ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_dlopen || defined __stub___dlopen
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return dlopen ();
> ;
> return 0;
> }
configure:14840: result: no
configure:14844: checking for dlopen in -ldl
configure:14877: gcc -o conftest conftest.c -ldl >&5
configure:14877: $? = 0
configure:14886: result: yes
configure:15021: checking whether a program can dlopen itself
configure:15101: gcc -o conftest -DHAVE_DLFCN_H -Wl,--export-dynamic conftest.c -ldl >&5
configure:15104: $? = 0
configure:15122: result: yes
configure:15127: checking whether a statically linked program can dlopen itself
configure:15207: gcc -o conftest -DHAVE_DLFCN_H -Wl,--export-dynamic -static conftest.c -ldl >&5
/tmp/ccRkAuGS.o: In function `main':
conftest.c:(.text+0x1e): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/usr/bin/ld: dynamic STT_GNU_IFUNC symbol `strcmp' with pointer equality in `/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libc.a(strcmp.o)' can not be used when making an executable; recompile with -fPIE and relink with -pie
collect2: error: ld returned 1 exit status
configure:15210: $? = 1
configure:15228: result: no
configure:15267: checking whether stripping libraries is possible
configure:15272: result: yes
configure:15307: checking if libtool supports shared libraries
configure:15309: result: no
configure:15312: checking whether to build shared libraries
configure:15333: result: no
configure:15336: checking whether to build static libraries
configure:15340: result: yes
configure:18681: checking if libtool supports shared libraries
configure:18683: result: no
configure:18686: checking whether to build shared libraries
configure:18706: result: no
configure:18709: checking whether to build static libraries
configure:18713: result: yes
configure:18747: gfortran -c -I. conftest.f90 >&5
configure:18750: $? = 0
configure:19179: checking for gfortran option to produce PIC
configure:19186: result: -fPIC
configure:19194: checking if gfortran PIC flag -fPIC works
configure:19212: gfortran -c -I. -fPIC conftest.f90 >&5
configure:19216: $? = 0
configure:19229: result: yes
configure:19252: checking if gfortran static flag -static works
configure:19280: result: no
configure:19292: checking if gfortran supports -c -o file.o
configure:19313: gfortran -c -I. -o out/conftest2.o conftest.f90 >&5
configure:19317: $? = 0
configure:19339: result: yes
configure:19344: checking if gfortran supports -c -o file.o
configure:19391: result: yes
configure:19421: checking whether the gfortran linker (/usr/bin/ld) supports shared libraries
configure:20524: result: yes
configure:20665: checking dynamic linker characteristics
configure:21326: result: no
configure:21379: checking how to hardcode library paths into programs
configure:21404: result: immediate
configure:21462: checking if we should install only statically linked executables
configure:21507: checking if -Wl,-rpath should be used to link shared libs in nondefault directories
configure:21525: result: yes
configure:21544: checking whether make will build with undefined variables
configure:21553: result: yes
configure:21568: checking for production mode
configure:21579: result: production
configure:21618: checking for ceil in -lm
configure:21651: gcc -o conftest conftest.c -lm >&5
conftest.c:33:6: warning: conflicting types for built-in function 'ceil'
char ceil ();
     ^
configure:21651: $? = 0
configure:21660: result: yes
configure:21671: checking for dlopen in -ldl
configure:21713: result: yes
configure:21838: checking for ANSI C header files
configure:21950: result: yes
configure:21958: checking whether time.h and sys/time.h may both be included
configure:21986: gcc -c conftest.c >&5
configure:21986: $? = 0
configure:21993: result: yes
configure:22006: checking sys/resource.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/resource.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/resource.h
configure:22006: result: yes
configure:22006: checking sys/time.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/time.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/time.h
configure:22006: result: yes
configure:22006: checking for unistd.h
configure:22006: result: yes
configure:22006: checking sys/ioctl.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/ioctl.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/ioctl.h
configure:22006: result: yes
configure:22006: checking for sys/stat.h
configure:22006: result: yes
configure:22019: checking sys/socket.h usability
configure:22019: gcc -c conftest.c >&5
configure:22019: $? = 0
configure:22019: result: yes
configure:22019: checking sys/socket.h presence
configure:22019: gcc -E conftest.c
configure:22019: $? = 0
configure:22019: result: yes
configure:22019: checking for sys/socket.h
configure:22019: result: yes
configure:22019: checking for sys/types.h
configure:22019: result: yes
configure:22032: checking stddef.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking stddef.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for stddef.h
configure:22032: result: yes
configure:22032: checking setjmp.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking setjmp.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for setjmp.h
configure:22032: result: yes
configure:22032: checking features.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking features.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for features.h
configure:22032: result: yes
configure:22044: checking dirent.h usability
configure:22044: gcc -c conftest.c >&5
configure:22044: $? = 0
configure:22044: result: yes
configure:22044: checking dirent.h presence
configure:22044: gcc -E conftest.c
configure:22044: $? = 0
configure:22044: result: yes
configure:22044: checking for dirent.h
configure:22044: result: yes
configure:22056: checking for stdint.h
configure:22056: result: yes
configure:22070: checking mach/mach_time.h usability
configure:22070: gcc -c conftest.c >&5
conftest.c:75:28: fatal error: mach/mach_time.h: No such file or directory
compilation terminated.
configure:22070: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <mach/mach_time.h>
configure:22070: result: no
configure:22070: checking mach/mach_time.h presence
configure:22070: gcc -E conftest.c
conftest.c:42:28: fatal error: mach/mach_time.h: No such file or directory
compilation terminated.
configure:22070: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <mach/mach_time.h>
configure:22070: result: no
configure:22070: checking for mach/mach_time.h
configure:22070: result: no
configure:22173: checking io.h usability
configure:22173: gcc -c conftest.c >&5
conftest.c:75:16: fatal error: io.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <io.h>
configure:22173: result: no
configure:22173: checking io.h presence
configure:22173: gcc -E conftest.c
conftest.c:42:16: fatal error: io.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <io.h>
configure:22173: result: no
configure:22173: checking for io.h
configure:22173: result: no
configure:22173: checking winsock2.h usability
configure:22173: gcc -c conftest.c >&5
conftest.c:75:22: fatal error: winsock2.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <winsock2.h>
configure:22173: result: no
configure:22173: checking winsock2.h presence
configure:22173: gcc -E conftest.c
conftest.c:42:22: fatal error: winsock2.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <winsock2.h>
configure:22173: result: no
configure:22173: checking for winsock2.h
configure:22173: result: no
configure:22173: checking sys/timeb.h usability
configure:22173: gcc -c conftest.c >&5
configure:22173: $? = 0
configure:22173: result: yes
configure:22173: checking sys/timeb.h presence
configure:22173: gcc -E conftest.c
configure:22173: $? = 0
configure:22173: result: yes
configure:22173: checking for sys/timeb.h
configure:22173: result: yes
configure:22270: checking for _FILE_OFFSET_BITS value needed for large files
configure:22303: gcc -c conftest.c >&5
configure:22303: $? = 0
configure:22343: result: no
configure:22522: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:55:1: error: unknown type name 'off64_t'
off64_t n = 0;
^
configure:22522: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> /* end confdefs.h. */
> #include <sys/types.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> off64_t n = 0;
> ;
> return 0;
> }
configure:22536: result: skipping test for lseek64(), fseeko64 , ftello64, ftruncate64() because off64_t is not defined
configure:22543: checking for fseeko
configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
configure:22543: $? = 0
configure:22543: result: yes
configure:22543: checking for ftello
configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
configure:22543: $? = 0
configure:22543: result: yes
configure:22573: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:59:15: error: storage size of 'sb' isn't known
struct stat64 sb;
              ^
configure:22573: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
>
> #include <sys/types.h>
> #include <sys/stat.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct stat64 sb;
> ;
> return 0;
> }
configure:22587: result: skipping test for stat64() and fstat64()
configure:22595: checking for off_t
configure:22595: gcc -c conftest.c >&5
configure:22595: $? = 0
configure:22595: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:20: error: expected expression before ')' token
if (sizeof ((off_t)))
                   ^
configure:22595: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((off_t)))
> return 0;
> ;
> return 0;
> }
configure:22595: result: yes
configure:22606: checking for size_t
configure:22606: gcc -c conftest.c >&5
configure:22606: $? = 0
configure:22606: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:21: error: expected expression before ')' token
if (sizeof ((size_t)))
                    ^
configure:22606: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((size_t)))
> return 0;
> ;
> return 0;
> }
configure:22606: result: yes
configure:22617: checking for ssize_t
configure:22617: gcc -c conftest.c >&5
configure:22617: $? = 0
configure:22617: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:22: error: expected expression before ')' token
if (sizeof ((ssize_t)))
                     ^
configure:22617: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((ssize_t)))
> return 0;
> ;
> return 0;
> }
configure:22617: result: yes
configure:22628: checking for ptrdiff_t
configure:22628: gcc -c conftest.c >&5
configure:22628: $? = 0
configure:22628: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:24: error: expected expression before ')' token
if (sizeof ((ptrdiff_t)))
                       ^
configure:22628: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((ptrdiff_t)))
> return 0;
> ;
> return 0;
> }
configure:22628: result: yes
configure:22639: checking whether byte ordering is bigendian
configure:22654: gcc -c conftest.c >&5
conftest.c:46:9: error: unknown type name 'not'
        not a universal capable compiler
        ^
conftest.c:46:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal'
        not a universal capable compiler
              ^
conftest.c:46:15: error: unknown type name 'universal'
configure:22654: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #ifndef __APPLE_CC__
> not a universal capable compiler
> #endif
> typedef int dummy;
>
configure:22707: gcc -c conftest.c >&5
configure:22707: $? = 0
configure:22733: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:60:4: error: unknown type name 'not'
   not big endian
   ^
conftest.c:60:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian'
   not big endian
           ^
configure:22733: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <sys/types.h>
> #include <sys/param.h>
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> #if BYTE_ORDER != BIG_ENDIAN
> not big endian
> #endif
>
> ;
> return 0;
> }
configure:22893: result: no
configure:22915: checking size of char
configure:22920: gcc -o conftest conftest.c -ldl -lm >&5
configure:22920: $? = 0
configure:22920: ./conftest
configure:22920: $? = 0
configure:22934: result: 1
configure:22948: checking size of short
configure:22953: gcc -o conftest conftest.c -ldl -lm >&5
configure:22953: $? = 0
configure:22953: ./conftest
configure:22953: $? = 0
configure:22967: result: 2
configure:22981: checking size of int
configure:22986: gcc -o conftest conftest.c -ldl -lm >&5
configure:22986: $? = 0
configure:22986: ./conftest
configure:22986: $? = 0
configure:23000: result: 4
configure:23014: checking size of unsigned
configure:23019: gcc -o conftest conftest.c -ldl -lm >&5
configure:23019: $? = 0
configure:23019: ./conftest
configure:23019: $? = 0
configure:23033: result: 4
configure:23047: checking size of long
configure:23052: gcc -o conftest conftest.c -ldl -lm >&5
configure:23052: $? = 0
configure:23052: ./conftest
configure:23052: $? = 0
configure:23066: result: 8
configure:23080: checking size of long long
configure:23085: gcc -o conftest conftest.c -ldl -lm >&5
configure:23085: $? = 0
configure:23085: ./conftest
configure:23085: $? = 0
configure:23099: result: 8
configure:23113: checking size of __int64
configure:23118: gcc -o conftest conftest.c -ldl -lm >&5
conftest.c: In function 'longval':
conftest.c:84:57: error: '__int64' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (__int64)); }
                                                        ^
conftest.c:84:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:85:67: error: '__int64' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
                                                                  ^
conftest.c: In function 'main':
conftest.c:103:28: error: '__int64' undeclared (first use in this function)
  if (((long int) (sizeof (__int64))) < 0)
                           ^
configure:23118: $? = 1
configure: program exited with status 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> static long int longval () { return (long int) (sizeof (__int64)); }
> static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
> #include <stdio.h>
> #include <stdlib.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
>
> FILE *f = fopen ("conftest.val", "w");
> if (! f)
> return 1;
> if (((long int) (sizeof (__int64))) < 0)
> {
> long int i = longval ();
> if (i != ((long int) (sizeof (__int64))))
> return 1;
> fprintf (f, "%ld", i);
> }
> else
> {
> unsigned long int i = ulongval ();
> if (i != ((long int) (sizeof (__int64))))
> return 1;
> fprintf (f, "%lu", i);
> }
> /* Do not output a trailing newline, as this causes \r\n confusion
> on some platforms. */
> return ferror (f) || fclose (f) != 0;
>
> ;
> return 0;
> }
configure:23132: result: 0
configure:23146: checking size of float
configure:23151: gcc -o conftest conftest.c -ldl -lm >&5
configure:23151: $? = 0
configure:23151: ./conftest
configure:23151: $? = 0
configure:23165: result: 4
configure:23179: checking size of double
configure:23184: gcc -o conftest conftest.c -ldl -lm >&5
configure:23184: $? = 0
configure:23184: ./conftest
configure:23184: $? = 0
configure:23198: result: 8
configure:23212: checking size of long double
configure:23217: gcc -o conftest conftest.c -ldl -lm >&5
configure:23217: $? = 0
configure:23217: ./conftest
configure:23217: $? = 0
configure:23231: result: 16
configure:23344: checking size of int8_t
configure:23349: gcc -o conftest conftest.c -ldl -lm >&5
configure:23349: $? = 0
configure:23349: ./conftest
configure:23349: $? = 0
configure:23363: result: 1
configure:23377: checking size of uint8_t
configure:23382: gcc -o conftest conftest.c -ldl -lm >&5
configure:23382: $? = 0
configure:23382: ./conftest
configure:23382: $? = 0
configure:23396: result: 1
configure:23410: checking size of int_least8_t
configure:23415: gcc -o conftest conftest.c -ldl -lm >&5
configure:23415: $? = 0
configure:23415: ./conftest
configure:23415: $? = 0
configure:23429: result: 1
configure:23443: checking size of uint_least8_t
configure:23448: gcc -o conftest conftest.c -ldl -lm >&5
configure:23448: $? = 0
configure:23448: ./conftest
configure:23448: $? = 0
configure:23462: result: 1
configure:23476: checking size of int_fast8_t
configure:23481: gcc -o conftest conftest.c -ldl -lm >&5
configure:23481: $? = 0
configure:23481: ./conftest
configure:23481: $? = 0
configure:23495: result: 1
configure:23509: checking size of uint_fast8_t
configure:23514: gcc -o conftest conftest.c -ldl -lm >&5
configure:23514: $? = 0
configure:23514: ./conftest
configure:23514: $? = 0
configure:23528: result: 1
configure:23543: checking size of int16_t
configure:23548: gcc -o conftest conftest.c -ldl -lm >&5
configure:23548: $? = 0
configure:23548: ./conftest
configure:23548: $? = 0
configure:23562: result: 2
configure:23576: checking size of uint16_t
configure:23581: gcc -o conftest conftest.c -ldl -lm >&5
configure:23581: $? = 0
configure:23581: ./conftest
configure:23581: $? = 0
configure:23595: result: 2
configure:23609: checking size of int_least16_t
configure:23614: gcc -o conftest conftest.c -ldl -lm >&5
configure:23614: $? = 0
configure:23614: ./conftest
configure:23614: $? = 0
configure:23628: result: 2
configure:23642: checking size of uint_least16_t
configure:23647: gcc -o conftest conftest.c -ldl -lm >&5
configure:23647: $? = 0
configure:23647: ./conftest
configure:23647: $? = 0
configure:23661: result: 2
configure:23675: checking size of int_fast16_t
configure:23680: gcc -o conftest conftest.c -ldl -lm >&5
configure:23680: $? = 0
configure:23680: ./conftest
configure:23680: $? = 0
configure:23694: result: 8
configure:23708: checking size of uint_fast16_t
configure:23713: gcc -o conftest conftest.c -ldl -lm >&5
configure:23713: $? = 0
configure:23713: ./conftest
configure:23713: $? = 0
configure:23727: result: 8
configure:23742: checking size of int32_t
configure:23747: gcc -o conftest conftest.c -ldl -lm >&5
configure:23747: $? = 0
configure:23747: ./conftest
configure:23747: $? = 0
configure:23761: result: 4
configure:23775: checking size of uint32_t
configure:23780: gcc -o conftest conftest.c -ldl -lm >&5
configure:23780: $? = 0
configure:23780: ./conftest
configure:23780: $? = 0
configure:23794: result: 4
configure:23808: checking size of int_least32_t
configure:23813: gcc -o conftest conftest.c -ldl -lm >&5
configure:23813: $? = 0
configure:23813: ./conftest
configure:23813: $? = 0
configure:23827: result: 4
configure:23841: checking size of uint_least32_t
configure:23846: gcc -o conftest conftest.c -ldl -lm >&5
configure:23846: $? = 0
configure:23846: ./conftest
configure:23846: $? = 0
configure:23860: result: 4
configure:23874: checking size of int_fast32_t
configure:23879: gcc -o conftest conftest.c -ldl -lm >&5
configure:23879: $? = 0
configure:23879: ./conftest
configure:23879: $? = 0
configure:23893: result: 8
configure:23907: checking size of uint_fast32_t
configure:23912: gcc -o conftest conftest.c -ldl -lm >&5
configure:23912: $? = 0
configure:23912: ./conftest
configure:23912: $? = 0
configure:23926: result: 8
configure:23941: checking size of int64_t
configure:23946: gcc -o conftest conftest.c -ldl -lm >&5
configure:23946: $? = 0
configure:23946: ./conftest
configure:23946: $? = 0
configure:23960: result: 8
configure:23974: checking size of uint64_t
configure:23979: gcc -o conftest conftest.c -ldl -lm >&5
configure:23979: $? = 0
configure:23979: ./conftest
configure:23979: $? = 0
configure:23993: result: 8
configure:24007: checking size of int_least64_t
configure:24012: gcc -o conftest conftest.c -ldl -lm >&5
configure:24012: $? = 0
configure:24012: ./conftest
configure:24012: $? = 0
configure:24026: result: 8
configure:24040: checking size of uint_least64_t
configure:24045: gcc -o conftest conftest.c -ldl -lm >&5
configure:24045: $? = 0
configure:24045: ./conftest
configure:24045: $? = 0
configure:24059: result: 8
configure:24073: checking size of int_fast64_t
configure:24078: gcc -o conftest conftest.c -ldl -lm >&5
configure:24078: $? = 0
configure:24078: ./conftest
configure:24078: $? = 0
configure:24092: result: 8
configure:24106: checking size of uint_fast64_t
configure:24111: gcc -o conftest conftest.c -ldl -lm >&5
configure:24111: $? = 0
configure:24111: ./conftest
configure:24111: $? = 0
configure:24125: result: 8
configure:24140: checking size of size_t
configure:24145: gcc -o conftest conftest.c -ldl -lm >&5
configure:24145: $? = 0
configure:24145: ./conftest
configure:24145: $? = 0
configure:24159: result: 8
configure:24173: checking size of ssize_t
configure:24178: gcc -o conftest conftest.c -ldl -lm >&5
configure:24178: $? = 0
configure:24178: ./conftest
configure:24178: $? = 0
configure:24192: result: 8
configure:24206: checking size of ptrdiff_t
configure:24211: gcc -o conftest conftest.c -ldl -lm >&5
configure:24211: $? = 0
configure:24211: ./conftest
configure:24211: $? = 0
configure:24225: result: 8
configure:24243: checking size of off_t
configure:24248: gcc -o conftest conftest.c -ldl -lm >&5
configure:24248: $? = 0
configure:24248: ./conftest
configure:24248: $? = 0
configure:24262: result: 8
configure:24276: checking size of off64_t
configure:24281: gcc -o conftest conftest.c -ldl -lm >&5
conftest.c: In function 'longval':
conftest.c:119:57: error: 'off64_t' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (off64_t)); }
                                                        ^
conftest.c:119:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:120:67: error: 'off64_t' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (off64_t)); }
                                                                  ^
conftest.c: In function 'main':
conftest.c:138:28: error: 'off64_t' undeclared (first use in this function)
  if (((long int) (sizeof (off64_t))) < 0)
                           ^
configure:24281: $? = 1
configure: program exited with status 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> static long int longval () { return (long int) (sizeof (off64_t)); }
> static unsigned long int ulongval () { return (long int) (sizeof (off64_t)); }
> #include <stdio.h>
> #include <stdlib.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
>
> FILE *f = fopen ("conftest.val", "w");
> if (! f)
> return 1;
> if (((long int) (sizeof (off64_t))) < 0)
> {
> long int i = longval ();
> if (i != ((long int) (sizeof (off64_t))))
> return 1;
> fprintf (f, "%ld", i);
> }
> else
> {
> unsigned long int i = ulongval ();
> if (i != ((long int) (sizeof (off64_t))))
> return 1;
> fprintf (f, "%lu", i);
> }
> /* Do not output a trailing newline, as this causes \r\n confusion
> on some platforms. */
> return ferror (f) || fclose (f) != 0;
>
> ;
> return 0;
> }
configure:24295: result: 0
configure:24396: checking if dev_t is scalar
configure:24421: gcc -c conftest.c >&5
configure:24421: $? = 0
configure:24425: result: yes
configure:24541: checking for dmalloc library
configure:24543: result: suppressed
configure:24791: checking zlib.h usability
configure:24791: gcc -c -I/opt/zlib/include conftest.c >&5
configure:24791: $? = 0
configure:24791: result: yes
configure:24791: checking zlib.h presence
configure:24791: gcc -E -I/opt/zlib/include conftest.c
configure:24791: $? = 0
configure:24791: result: yes
configure:24791: checking for zlib.h
configure:24791: result: yes
configure:24810: checking for compress2 in -lz
configure:24843: gcc -o conftest -I/opt/zlib/include -L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
configure:24843: $? = 0
configure:24852: result: yes
configure:24872: checking for compress2
configure:24872: gcc -o conftest -I/opt/zlib/include -L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
configure:24872: $? = 0
configure:24872: result: yes
configure:25023: checking szlib.h usability
configure:25023: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25023: $? = 0
configure:25023: result: yes
configure:25023: checking szlib.h presence
configure:25023: gcc -E -I/opt/zlib/include -I/opt/szip/include conftest.c
configure:25023: $? = 0
configure:25023: result: yes
configure:25023: checking for szlib.h
configure:25023: result: yes
configure:25042: checking for SZ_BufftoBuffCompress in -lsz
configure:25075: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25075: $? = 0
configure:25084: result: yes
configure:25107: checking for szlib encoder
configure:25145: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c: In function 'main':
conftest.c:100:17: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
                exit(0);
                ^
conftest.c:100:17: warning: incompatible implicit declaration of built-in function 'exit'
conftest.c:100:17: note: include '<stdlib.h>' or provide a declaration of 'exit'
conftest.c:102:17: warning: incompatible implicit declaration of built-in function 'exit'
                exit(1);
                ^
conftest.c:102:17: note: include '<stdlib.h>' or provide a declaration of 'exit'
configure:25145: $? = 0
configure:25145: ./conftest
configure:25145: $? = 0
configure:25163: result: yes
configure:25286: checking for thread safe support
configure:25313: result: no
configure:25611: checking whether CLOCK_MONOTONIC is declared
configure:25611: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25611: $? = 0
configure:25611: result: yes
configure:25626: checking for tm_gmtoff in struct tm
configure:25649: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25649: $? = 0
configure:25653: result: yes
configure:25662: checking for global timezone variable
configure:25692: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25692: $? = 0
configure:25696: result: yes
configure:25711: checking for st_blocks in struct stat
configure:25733: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25733: $? = 0
configure:25737: result: yes
configure:25751: checking for _getvideoconfig
configure:25751: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccsNnkS7.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_getvideoconfig'
collect2: error: ld returned 1 exit status
configure:25751: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define _getvideoconfig to an innocuous variant, in case <limits.h> declares _getvideoconfig.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define _getvideoconfig innocuous__getvideoconfig
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char _getvideoconfig (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef _getvideoconfig
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char _getvideoconfig ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub__getvideoconfig || defined __stub____getvideoconfig
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return _getvideoconfig ();
> ;
> return 0;
> }
configure:25751: result: no
configure:25751: checking for gettextinfo
configure:25751: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/cc4i6cWa.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `gettextinfo'
collect2: error: ld returned 1 exit status
configure:25751: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define gettextinfo to an innocuous variant, in case <limits.h> declares gettextinfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define gettextinfo innocuous_gettextinfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char gettextinfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef gettextinfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char gettextinfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_gettextinfo || defined __stub___gettextinfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return gettextinfo ();
> ;
> return 0;
> }
configure:25751: result: no
configure:25766: checking for GetConsoleScreenBufferInfo
configure:25766: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccSBzVLg.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `GetConsoleScreenBufferInfo'
collect2: error: ld returned 1 exit status
configure:25766: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define GetConsoleScreenBufferInfo to an innocuous variant, in case <limits.h> declares GetConsoleScreenBufferInfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define GetConsoleScreenBufferInfo innocuous_GetConsoleScreenBufferInfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char GetConsoleScreenBufferInfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef GetConsoleScreenBufferInfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char GetConsoleScreenBufferInfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_GetConsoleScreenBufferInfo || defined __stub___GetConsoleScreenBufferInfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return GetConsoleScreenBufferInfo ();
> ;
> return 0;
> }
configure:25766: result: no
configure:25780: checking for _scrsize
configure:25780: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/cciTXu0i.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_scrsize'
collect2: error: ld returned 1 exit status
configure:25780: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define _scrsize to an innocuous variant, in case <limits.h> declares _scrsize.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define _scrsize innocuous__scrsize
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char _scrsize (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef _scrsize
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char _scrsize ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub__scrsize || defined __stub____scrsize
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return _scrsize ();
> ;
> return 0;
> }
configure:25780: result: no
configure:25780: checking for ioctl
configure:25780: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25780: $? = 0
configure:25780: result: yes
configure:25790: checking for struct videoconfig
configure:25811: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:110:20: error: storage size of 'w' isn't known
struct videoconfig w; w.numtextcols=0;
                   ^
configure:25811: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> /* end confdefs.h. */
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct videoconfig w; w.numtextcols=0;
> ;
> return 0;
> }
configure:25818: result: no
configure:25823: checking for struct text_info
configure:25844: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:110:18: error: storage size of 'w' isn't known
struct text_info w; w.screenwidth=0;
                 ^
configure:25844: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> /* end confdefs.h. */
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct text_info w; w.screenwidth=0;
> ;
> return 0;
> }
configure:25851: result: no
configure:25856: checking for TIOCGWINSZ
configure:25877: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25877: $? = 0
configure:25881: result: yes
configure:25889: checking for TIOCGETD
configure:25910: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25910: $? = 0
configure:25914: result: yes
configure:25928: checking for library containing clock_gettime
configure:25967: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25967: $? = 0
configure:25984: result: none required
configure:25995: checking for alarm
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for clock_gettime
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for difftime
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for fork
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:126:6: warning: conflicting types for built-in function 'fork'
char fork ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for frexpf
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:127:6: warning: conflicting types for built-in function 'frexpf'
char frexpf ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for frexpl
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:128:6: warning: conflicting types for built-in function 'frexpl'
char frexpl ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:26007: checking for gethostname
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for getpwuid
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for getrusage
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for gettimeofday
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26019: checking for lstat
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for rand_r
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for random
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for setsysinfo
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccdLPp70.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `setsysinfo'
collect2: error: ld returned 1 exit status
configure:26019: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> /* end confdefs.h. */
> /* Define setsysinfo to an innocuous variant, in case <limits.h> declares setsysinfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define setsysinfo innocuous_setsysinfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char setsysinfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef setsysinfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char setsysinfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_setsysinfo || defined __stub___setsysinfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return setsysinfo ();
> ;
> return 0;
> }
configure:26019: result: no
configure:26031: checking for signal
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for longjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for setjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for siglongjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for sigsetjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccPMRaFg.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `sigsetjmp'
collect2: error: ld returned 1 exit status
configure:26031: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> #define HAVE_SIGNAL 1
> #define HAVE_LONGJMP 1
> #define HAVE_SETJMP 1
> #define HAVE_SIGLONGJMP 1
> /* end confdefs.h. */
> /* Define sigsetjmp to an innocuous variant, in case <limits.h> declares sigsetjmp.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define sigsetjmp innocuous_sigsetjmp
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char sigsetjmp (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef sigsetjmp
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char sigsetjmp ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_sigsetjmp || defined __stub___sigsetjmp
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return sigsetjmp ();
> ;
> return 0;
> }
configure:26031: result: no
configure:26031: checking for sigprocmask
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26043: checking for snprintf
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:141:6: warning: conflicting types for built-in function 'snprintf'
char snprintf ();
     ^
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for srandom
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for strdup
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:143:6: warning: conflicting types for built-in function 'strdup'
char strdup ();
     ^
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for symlink
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for system
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26055: checking for tmpfile
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for asprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for vasprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for vsnprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:149:6: warning: conflicting types for built-in function 'vsnprintf'
char vsnprintf ();
     ^
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for waitpid
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26068: checking for an ANSI C-conforming const
configure:26142: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26142: $? = 0
configure:26149: result: yes
configure:26157: checking for inline
configure:26173: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26173: $? = 0
configure:26181: result: inline
configure:26200: checking for __attribute__ extension
configure:26221: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26221: $? = 0
configure:26225: result: yes
configure:26233: checking for __func__ extension
configure:26254: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26254: $? = 0
configure:26258: result: yes
configure:26265: checking for __FUNCTION__ extension
configure:26286: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26286: $? = 0
configure:26290: result: yes
configure:26297: checking for C99 designated initialization support
configure:26326: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26326: $? = 0
configure:26330: result: yes
configure:26343: checking how to print long long
configure:26370: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26370: $? = 0
configure:26370: ./conftest
configure:26370: $? = 0
configure:26381: result: %ld and %lu
configure:26393: checking Threads support system scope
configure:26423: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26423: $? = 0
configure:26423: ./conftest
configure:26423: $? = 0
configure:26439: result: yes
configure:26450: checking for debug flags
configure:26483: result: none
configure:26503: checking whether function stack tracking is enabled
configure:26522: result: no
configure:26530: checking whether metadata trace file code is enabled
configure:26549: result: no
configure:26559: checking for API tracing
configure:26584: result: no
configure:26596: checking for instrumented library
configure:26623: result: no
configure:26634: checking whether to clear file buffers
configure:26645: result: yes
configure:26665: checking whether a memory checking tool will be used
configure:26684: result: no
configure:26803: checking for parallel support files
configure:26815: result: provided by compiler
configure:26820: checking whether a simple MPI-IO C program can be linked
configure:26842: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:135:17: fatal error: mpi.h: No such file or directory
compilation terminated.
configure:26842: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> #define HAVE_SIGNAL 1
> #define HAVE_LONGJMP 1
> #define HAVE_SETJMP 1
> #define HAVE_SIGLONGJMP 1
> #define HAVE_SIGPROCMASK 1
> #define HAVE_SNPRINTF 1
> #define HAVE_SRANDOM 1
> #define HAVE_STRDUP 1
> #define HAVE_SYMLINK 1
> #define HAVE_SYSTEM 1
> #define HAVE_TMPFILE 1
> #define HAVE_ASPRINTF 1
> #define HAVE_VASPRINTF 1
> #define HAVE_VSNPRINTF 1
> #define HAVE_WAITPID 1
> #define HAVE_ATTRIBUTE 1
> #define HAVE_C99_FUNC 1
> #define HAVE_FUNCTION 1
> #define HAVE_C99_DESIGNATED_INITIALIZER 1
> #define PRINTF_LL_WIDTH "l"
> #define SYSTEM_SCOPE_THREADS 1
> #define CLEAR_MEMORY 1
> /* end confdefs.h. */
> #include <mpi.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> MPI_Init(0, (void *)0);
> MPI_File_open(0, (void *)0, 0, 0, (void *)0);
> ;
> return 0;
> }
configure:26846: result: no
configure:26848: error: unable to link a simple MPI-IO C program

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-none
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_dummy_main=none
ac_cv_fc_libs=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath'
ac_cv_fc_mangling='lower case, underscore, no extra underscore'
ac_cv_fc_srcext_f90=none
ac_cv_fortran_dummy_main=none
ac_cv_func_GetConsoleScreenBufferInfo=no
ac_cv_func__getvideoconfig=no
ac_cv_func__scrsize=no
ac_cv_func_alarm=yes
ac_cv_func_asprintf=yes
ac_cv_func_clock_gettime=yes
ac_cv_func_compress2=yes
ac_cv_func_difftime=yes
ac_cv_func_dlopen=no
ac_cv_func_fork=yes
ac_cv_func_frexpf=yes
ac_cv_func_frexpl=yes
ac_cv_func_fseeko=yes
ac_cv_func_ftello=yes
ac_cv_func_gethostname=yes
ac_cv_func_getpwuid=yes
ac_cv_func_getrusage=yes
ac_cv_func_gettextinfo=no
ac_cv_func_gettimeofday=yes
ac_cv_func_ioctl=yes
ac_cv_func_longjmp=yes
ac_cv_func_lstat=yes
ac_cv_func_rand_r=yes
ac_cv_func_random=yes
ac_cv_func_setjmp=yes
ac_cv_func_setsysinfo=no
ac_cv_func_shl_load=no
ac_cv_func_siglongjmp=yes
ac_cv_func_signal=yes
ac_cv_func_sigprocmask=yes
ac_cv_func_sigsetjmp=no
ac_cv_func_snprintf=yes
ac_cv_func_srandom=yes
ac_cv_func_strdup=yes
ac_cv_func_symlink=yes
ac_cv_func_system=yes
ac_cv_func_tmpfile=yes
ac_cv_func_vasprintf=yes
ac_cv_func_vsnprintf=yes
ac_cv_func_waitpid=yes
ac_cv_have_decl_CLOCK_MONOTONIC=yes
ac_cv_header_dirent_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_features_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_io_h=no
ac_cv_header_mach_mach_time_h=no
ac_cv_header_memory_h=yes
ac_cv_header_setjmp_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stddef_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_ioctl_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_socket_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_timeb_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_szlib_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_header_winsock2_h=no
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-pc-none
ac_cv_lib_dl_dlopen=yes
ac_cv_lib_dld_shl_load=no
ac_cv_lib_m_ceil=yes
ac_cv_lib_sz_SZ_BufftoBuffCompress=yes
ac_cv_lib_z_compress2=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_TR=/usr/bin/tr
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AR=ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_PERL=perl
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_fc_v=-v
ac_cv_prog_make_make_set=yes
ac_cv_search_clock_gettime='none required'
ac_cv_sizeof___int64=0
ac_cv_sizeof_char=1
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int16_t=2
ac_cv_sizeof_int32_t=4
ac_cv_sizeof_int64_t=8
ac_cv_sizeof_int8_t=1
ac_cv_sizeof_int=4
ac_cv_sizeof_int_fast16_t=8
ac_cv_sizeof_int_fast32_t=8
ac_cv_sizeof_int_fast64_t=8
ac_cv_sizeof_int_fast8_t=1
ac_cv_sizeof_int_least16_t=2
ac_cv_sizeof_int_least32_t=4
ac_cv_sizeof_int_least64_t=8
ac_cv_sizeof_int_least8_t=1
ac_cv_sizeof_long=8
ac_cv_sizeof_long_double=16
ac_cv_sizeof_long_long=8
ac_cv_sizeof_off64_t=0
ac_cv_sizeof_off_t=8
ac_cv_sizeof_ptrdiff_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=8
ac_cv_sizeof_ssize_t=8
ac_cv_sizeof_uint16_t=2
ac_cv_sizeof_uint32_t=4
ac_cv_sizeof_uint64_t=8
ac_cv_sizeof_uint8_t=1
ac_cv_sizeof_uint_fast16_t=8
ac_cv_sizeof_uint_fast32_t=8
ac_cv_sizeof_uint_fast64_t=8
ac_cv_sizeof_uint_fast8_t=1
ac_cv_sizeof_uint_least16_t=2
ac_cv_sizeof_uint_least32_t=4
ac_cv_sizeof_uint_least64_t=8
ac_cv_sizeof_uint_least8_t=1
ac_cv_sizeof_unsigned=4
ac_cv_sys_file_offset_bits=no
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
hdf5_cv_host=x86_64-pc-none
hdf5_cv_printf_ll=l
hdf5_cv_system_scope_threads=yes
hdf5_cv_szlib_can_encode=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=unknown
lt_cv_dlopen=dlopen
lt_cv_dlopen_libs=-ldl
lt_cv_dlopen_self=yes
lt_cv_dlopen_self_static=no
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_FC=no
lt_cv_prog_gnu_ld=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $lib[^ ]*$$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* $.*$$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* $.*$$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing aclocal-1.14'
ADD_PARALLEL_FILES=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
AM_CXXFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_FCFLAGS=''
AM_LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
AM_MAKEFLAGS=''
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoconf'
AUTOHEADER='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoheader'
AUTOMAKE='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing automake-1.14'
AWK='gawk'
BUILD_ALL_CONDITIONAL_FALSE=''
BUILD_ALL_CONDITIONAL_TRUE=''
BUILD_CXX_CONDITIONAL_FALSE=''
BUILD_CXX_CONDITIONAL_TRUE=''
BUILD_FORTRAN_CONDITIONAL_FALSE=''
BUILD_FORTRAN_CONDITIONAL_TRUE=''
BUILD_HDF5_HL_CONDITIONAL_FALSE=''
BUILD_HDF5_HL_CONDITIONAL_TRUE=''
BUILD_PARALLEL_CONDITIONAL_FALSE=''
BUILD_PARALLEL_CONDITIONAL_TRUE=''
BUILD_SHARED_SZIP_CONDITIONAL_FALSE='#'
BUILD_SHARED_SZIP_CONDITIONAL_TRUE=''
BYTESEX=''
CC='gcc'
CCDEPMODE='depmode=gcc3'
CC_VERSION=''
CFLAGS=' '
CLEARFILEBUF='yes'
CODESTACK='no'
CONFIG_DATE=''
CONFIG_MODE='production'
CONFIG_USER=''
CPP='gcc -E'
CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
CXX='no'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=' '
CXX_VERSION=''
CYGPATH_W='echo'
DEBUG_PKG=''
DEFAULT_API_VERSION=''
DEFS=''
DEPDIR='.deps'
DEPRECATED_SYMBOLS=''
DIRECT_VFD='no'
DIRECT_VFD_CONDITIONAL_FALSE=''
DIRECT_VFD_CONDITIONAL_TRUE=''
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
EXTERNAL_FILTERS='deflate(zlib),szip(encoder)'
F9XMODEXT='mod'
F9XMODFLAG='-I'
F9XSUFFIXFLAG=''
FC2003=''
FC='gfortran'
FCFLAGS='-I. '
FCFLAGS_f90=''
FCLIBS=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath'
FC_VERSION=''
FGREP='/usr/bin/grep -F'
FORTRAN_2003_CONDITIONAL_F_FALSE='#'
FORTRAN_2003_CONDITIONAL_F_TRUE=''
FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#'
FORTRAN_HAVE_C_SIZEOF_FALSE='#'
FORTRAN_HAVE_C_SIZEOF_TRUE=''
FORTRAN_HAVE_SIZEOF_FALSE='#'
FORTRAN_HAVE_SIZEOF_TRUE=''
FORTRAN_HAVE_STORAGE_SIZE_FALSE='#'
FORTRAN_HAVE_STORAGE_SIZE_TRUE=''
FORTRAN_SHARED_CONDITIONAL_FALSE='#'
FORTRAN_SHARED_CONDITIONAL_TRUE=''
FSEARCH_DIRS=''
GREP='/usr/bin/grep'
H5_CFLAGS=' '
H5_CPPFLAGS=' -DNDEBUG -UH5_DEBUG_API'
H5_CXXFLAGS=' '
H5_FCFLAGS=' '
H5_FORTRAN_SHARED='yes'
H5_LDFLAGS=''
H5_VERSION=''
HADDR_T=''
HAVE_DMALLOC='no'
HAVE_FORTRAN_2003='yes'
HAVE_PTHREAD=''
HAVE_SHARED_CONDITIONAL_FALSE=''
HAVE_SHARED_CONDITIONAL_TRUE=''
HDF5_HL='yes'
HDF5_INTERFACES=' fortran'
HDF_CXX='no'
HDF_FORTRAN2003='yes'
HDF_FORTRAN='yes'
HID_T=''
HL='hl'
HL_FOR=''
HSIZE_T=''
HSSIZE_T=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTRUMENT='no'
INSTRUMENT_LIBRARY='no'
LD='/usr/bin/ld'
LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
LIBOBJS=''
LIBS='-lsz -lz -ldl -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LL_PATH='/opt/szip/lib'
LN_S='ln -s'
LTLIBOBJS=''
LT_STATIC_EXEC=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/usr/bin/mkdir -p'
MPE='no'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJECT_NAMELEN_DEFAULT_F=''
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='hdf5'
PACKAGE_BUGREPORT='help@hdfgroup.org'
PACKAGE_NAME='HDF5'
PACKAGE_STRING='HDF5 1.8.15'
PACKAGE_TARNAME='hdf5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8.15'
PARALLEL='yes'
PATH_SEPARATOR=':'
PERL='perl'
RANLIB='ranlib'
ROOT=''
RUNPARALLEL=''
RUNSERIAL=''
R_INTEGER=''
R_LARGE=''
SEARCH=''
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
SIZE_T=''
STATIC_EXEC='no'
STATIC_SHARED=''
STRICT_FORMAT_CHECKS=''
STRIP='strip'
TESTPARALLEL=''
THREADSAFE='no'
TIME=''
TR='/usr/bin/tr'
TRACE_API='no'
UNAME_INFO='Linux turing 4.0.4-2-ARCH #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015 x86_64 GNU/Linux'
USE_FILTER_DEFLATE='yes'
USE_FILTER_SZIP='yes'
USE_PLUGINS_CONDITIONAL_FALSE='#'
USE_PLUGINS_CONDITIONAL_TRUE=''
USINGMEMCHECKER='no'
VERSION='1.8.15'
WORDS_BIGENDIAN=''
ac_ct_AR=''
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_FC='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
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am__leading_dot='.'
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am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-none'
build_alias='x86_64'
build_cpu='x86_64'
build_os='none'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared='no'
enable_static='yes'
exec_prefix='NONE'
host='x86_64-pc-none'
host_alias=''
host_cpu='x86_64'
host_os='none'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/opt/hdf5'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.15"
#define PACKAGE_STRING "HDF5 1.8.15"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.15"
#define FC_FUNC(name,NAME) name ## _
#define FC_FUNC_(name,NAME) name ## _
#define INCLUDE_HL 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_DIRENT_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 0
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#define HAVE_ZLIB_H 1
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#define HAVE_FILTER_SZIP 1
#define HAVE_TM_GMTOFF 1
#define HAVE_TIMEZONE 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_CLOCK_GETTIME 1
#define HAVE_DIFFTIME 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_ASPRINTF 1
#define HAVE_VASPRINTF 1
#define HAVE_VSNPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1

configure: exit 1

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

maxim.abalenkov · June 4, 2015, 1:25pm

Hello Pierre,

I have tried to set the CPPFLAGS to /usr/include and /opt/mpich/include, where MPICH is installed. I have also created a soft link /usr/include/mpi.h —> /opt/mpich/include/mpi.h. Unfortunately, the error persists.

···

—
Kind regards,
Maxim Abalenkov

On Jun 4, 2015, at 2:03 PM, Pierre de Buyl <pierre.debuyl@chem.kuleuven.be> wrote:

Can you try with

export CPPFLAGS="-I/usr/include"

(or the appropriate path the the mpi.h headers)?

The complaint by the compiler is about finding "mpi.h".

Regards,

Pierre

On Thu, Jun 04, 2015 at 11:42:22AM +0100, Maxim Abalenkov wrote:

Dear all,

I experience a problem configuring a parallel installation of HDF5 version
1.8.15. I would like to configure it with Intel Fortran compiler 14.0.0
20130728 and MPICH 3.1.4 on Arch Linux 64-bit. As a test I have done a
sequential configuration, that worked. The environment flags I have used
were:

export F77=$MPICH/mpifort
export F90=$MPICH/mpifort
export F9X=$MPICH/mpifort
export CC=$MPICH/mpicc
export FFLAGS="-I/usr/include/"
export CFLAGS="-I/usr/include/"
export LDFLAGS="-L/usr/lib/"

The configure command was launched with the following switches:

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
               --with-zlib=/opt/zlib/include,/opt/zlib/lib \
               --with-szlib=/opt/szip/include,/opt/szip/lib \
               --enable-production --build=x86_64

The configure command for parallel HDF has an additional switch
(--enable-parallel):

sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
               --with-zlib=/opt/zlib/include,/opt/zlib/lib \
               --with-szlib=/opt/szip/include,/opt/szip/lib \
               --enable-production --build=x86_64 \
               --enable-parallel

Parallel configuration breaks with the following error message:

checking whether a simple MPI-IO C program can be linked... no
configure: error: unable to link a simple MPI-IO C program

As a test I have tried to compile and run "sample_mpio.f90" provided in the
README_parallel file:

mpifort sample_mpio.f90 -o sample_mpio
mpiexec -n 4 ./sample_mpio

The sample program compiles and runs perfectly fine.

Running configuration script with the superuser privileges is necessary,
since otherwise I receive an access denied messages in the middle of the
configuration and configure script fails. Any guidance or hints would be
most welcome. The config.log file is attached.

--
Kind regards,
Maxim Abalenkov

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by HDF5 configure 1.8.15, which was
generated by GNU Autoconf 2.69. Invocation command line was

$ ./configure --prefix=/opt/hdf5 --enable-fortran --enable-fortran2003 --with-zlib=/opt/zlib/include,/opt/zlib/lib --with-szlib=/opt/szip/include,/opt/szip/lib --enable-production --build=x86_64 --enable-parallel

## --------- ##
## Platform. ##
## --------- ##

hostname = turing
uname -m = x86_64
uname -r = 4.0.4-2-ARCH
uname -s = Linux
uname -v = #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /opt/mpich/bin
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/mpirt/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64_mic
PATH: /opt/intel/composer_xe_2013_sp1.0.080/debugger/gui/intel64
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/lib/jvm/default/bin
PATH: /usr/lib32/jvm/default/bin
PATH: /usr/bin/site_perl
PATH: /usr/bin/vendor_perl
PATH: /usr/bin/core_perl

## ----------- ##
## Core tests. ##
## ----------- ##

configure:3072: checking for a BSD-compatible install
configure:3140: result: /usr/bin/install -c
configure:3151: checking whether build environment is sane
configure:3206: result: yes
configure:3357: checking for a thread-safe mkdir -p
configure:3396: result: /usr/bin/mkdir -p
configure:3403: checking for gawk
configure:3419: found /usr/bin/gawk
configure:3430: result: gawk
configure:3441: checking whether make sets $(MAKE)
configure:3463: result: yes
configure:3492: checking whether make supports nested variables
configure:3509: result: yes
configure:3645: checking whether make supports nested variables
configure:3662: result: yes
configure:3685: checking whether to enable maintainer-specific portions of Makefiles
configure:3694: result: no
configure:3738: checking build system type
configure:3752: result: x86_64-pc-none
configure:3772: checking host system type
configure:3785: result: x86_64-pc-none
configure:3853: checking shell variables initial values
ACLOCAL='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing aclocal-1.14'
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
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ac_cv_env_target_alias_value=
ac_cv_host=x86_64-pc-none
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
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ac_env_LIBS_value=
ac_env_build_alias_set=set
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ac_includes_default='#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
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#ifdef HAVE_SYS_STAT_H
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#ifdef STDC_HEADERS
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# ifdef HAVE_STDLIB_H
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ac_save_IFS='
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ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
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ac_site_file=/opt/hdf5/etc/config.site
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CONFIG_MODE
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ADD_PARALLEL_FILES
USINGMEMCHECKER
CLEARFILEBUF
INSTRUMENT_LIBRARY
TRACE_API
DEBUG_PKG
HAVE_PTHREAD
BUILD_SHARED_SZIP_CONDITIONAL_FALSE
BUILD_SHARED_SZIP_CONDITIONAL_TRUE
LL_PATH
USE_FILTER_SZIP
USE_FILTER_DEFLATE
AM_MAKEFLAGS
LT_STATIC_EXEC
USE_PLUGINS_CONDITIONAL_FALSE
USE_PLUGINS_CONDITIONAL_TRUE
CPP
OTOOL64
OTOOL
LIPO
NMEDIT
DSYMUTIL
MANIFEST_TOOL
RANLIB
ac_ct_AR
DLLTOOL
OBJDUMP
LN_S
NM
ac_ct_DUMPBIN
DUMPBIN
LD
FGREP
EGREP
GREP
SED
LIBTOOL
FORTRAN_SHARED_CONDITIONAL_FALSE
FORTRAN_SHARED_CONDITIONAL_TRUE
H5_FORTRAN_SHARED
TESTPARALLEL
RUNPARALLEL
RUNSERIAL
PARALLEL
TIME
TR
AR
PERL
HL_FOR
HL
CXXCPP
am__fastdepCXX_FALSE
am__fastdepCXX_TRUE
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ac_ct_CXX
CXXFLAGS
FORTRAN_DEFAULT_REALisDBLE_F_FALSE
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FORTRAN_2003_CONDITIONAL_F_FALSE
FORTRAN_2003_CONDITIONAL_F_TRUE
FORTRAN_HAVE_STORAGE_SIZE_FALSE
FORTRAN_HAVE_STORAGE_SIZE_TRUE
FORTRAN_HAVE_C_SIZEOF_FALSE
FORTRAN_HAVE_C_SIZEOF_TRUE
FORTRAN_HAVE_SIZEOF_FALSE
FORTRAN_HAVE_SIZEOF_TRUE
FCLIBS
F9XMODEXT
F9XMODFLAG
FSEARCH_DIRS
F9XSUFFIXFLAG
FCFLAGS_f90
ac_ct_FC
FCFLAGS
OBJECT_NAMELEN_DEFAULT_F
SIZE_T
HID_T
HSSIZE_T
HSIZE_T
HADDR_T
R_INTEGER
R_LARGE
HAVE_FORTRAN_2003
HDF5_INTERFACES
am__fastdepCC_FALSE
am__fastdepCC_TRUE
CCDEPMODE
am__nodep
AMDEPBACKSLASH
AMDEP_FALSE
AMDEP_TRUE
am__quote
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CFLAGS
CC
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HDF5_HL
CXX
HDF_CXX
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FC
HDF_FORTRAN2003
HDF_FORTRAN
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MPE
EXTERNAL_FILTERS
AM_LDFLAGS
AM_CPPFLAGS
AM_CXXFLAGS
AM_FCFLAGS
AM_CFLAGS
H5_LDFLAGS
H5_CXXFLAGS
H5_FCFLAGS
H5_CPPFLAGS
H5_CFLAGS
CPPFLAGS
host_os
host_vendor
host_cpu
host
build_os
build_vendor
build_cpu
build
MAINT
MAINTAINER_MODE_FALSE
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AM_BACKSLASH
AM_DEFAULT_VERBOSITY
AM_DEFAULT_V
AM_V
am__untar
am__tar
AMTAR
am__leading_dot
SET_MAKE
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MKDIR_P
INSTALL_STRIP_PROGRAM
STRIP
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MAKEINFO
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AUTOCONF
ACLOCAL
VERSION
PACKAGE
CYGPATH_W
am__isrc
INSTALL_DATA
INSTALL_SCRIPT
INSTALL_PROGRAM
target_alias
host_alias
build_alias
LIBS
ECHO_T
ECHO_N
ECHO_C
DEFS
mandir
localedir
libdir
psdir
pdfdir
dvidir
htmldir
infodir
docdir
oldincludedir
includedir
localstatedir
sharedstatedir
sysconfdir
datadir
datarootdir
libexecdir
sbindir
bindir
program_transform_name
prefix
exec_prefix
PACKAGE_URL
PACKAGE_BUGREPORT
PACKAGE_STRING
PACKAGE_VERSION
PACKAGE_TARNAME
PACKAGE_NAME
PATH_SEPARATOR
SHELL'
ac_tool_prefix=
ac_unique_file=src/H5.c
ac_unrecognized_opts=
ac_unrecognized_sep=
ac_user_opts='
enable_option_checking
enable_silent_rules
enable_maintainer_mode
enable_dependency_tracking
enable_unsupported
enable_fortran
enable_fortran2003
enable_cxx
enable_hl
enable_shared
enable_static
with_pic
enable_fast_install
with_gnu_ld
with_sysroot
enable_libtool_lock
enable_static_exec
enable_sharedlib_rpath
enable_production
with_fnord
with_dmalloc
with_zlib
with_szlib
enable_threadsafe
with_pthread
enable_debug
enable_codestack
enable_metadata_trace_file
enable_trace
enable_instrument
enable_clear_file_buffers
enable_using_memchecker
enable_parallel
with_mpe
enable_direct_vfd
with_default_plugindir
enable_dconv_exception
enable_dconv_accuracy
enable_build_all
enable_deprecated_symbols
with_default_api_version
enable_strict_format_checks
enable_embedded_libinfo
'
ac_useropt=parallel
ac_useropt_orig=parallel
ac_val='${datarootdir}/man'
ac_var=CPP
ac_word=gawk
am__api_version=1.14
am__leading_dot=.
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
am_aux_dir=/home/mabalenk/install/hdf5/hdf5-1.8.15/bin
am_cv_make_support_nested_variables=yes
am_lf='
'
am_make=make
am_missing_run='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing '
am_sleep_pid=17744
as_basename=basename
as_bourne_compatible='if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
emulate sh
NULLCMD=:
# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
# is contrary to our usage. Disable this feature.
alias -g '\''${1+"$@"}'\''='\''"$@"'\''
setopt NO_GLOB_SUBST
else
case `(set -o) 2>/dev/null` in #(
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*) :
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'
as_cr_LETTERS=ABCDEFGHIJKLMNOPQRSTUVWXYZ
as_cr_Letters=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ
as_cr_alnum=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789
as_cr_digits=0123456789
as_cr_letters=abcdefghijklmnopqrstuvwxyz
as_dir=/usr/bin
as_dirname=dirname
as_echo='printf %s\n'
as_echo_n='printf %s'
as_executable_p=as_fn_executable_p
as_expr=expr
as_have_required=yes
as_lineno_1=477
as_lineno_1a=477
as_lineno_2=478
as_lineno_2a=478
as_ln_s='ln -s'
as_me=configure
as_mkdir_p='mkdir -p "$as_dir"'
as_myself=./configure
as_nl='
'
as_required='as_fn_return () { (exit $1); }
as_fn_success () { as_fn_return 0; }
as_fn_failure () { as_fn_return 1; }
as_fn_ret_success () { return 0; }
as_fn_ret_failure () { return 1; }

exitcode=0
as_fn_success || { exitcode=1; echo as_fn_success failed.; }
as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
if ( set x; as_fn_ret_success y && test x = "$1" ); then :

else
exitcode=1; echo positional parameters were not saved.
fi
test x$exitcode = x0 || exit 1
test -x / || exit 1'
as_save_IFS='
'
as_suggested=' as_lineno_1=198 as_lineno_1a=$LINENO
as_lineno_2=199 as_lineno_2a=$LINENO
eval '\''test "x$as_lineno_1'\''$as_run'\''" != "x$as_lineno_2'\''$as_run'\''" &&
test "x`expr $as_lineno_1'\''$as_run'\'' + 1`" = "x$as_lineno_2'\''$as_run'\''"'\'' || exit 1

test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || (
   ECHO='\''\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'\''
   ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO
   ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO$ECHO
   PATH=/empty FPATH=/empty; export PATH FPATH
   test "X`printf %s $ECHO`" = "X$ECHO" \
     >> test "X`print -r -- $ECHO`" = "X$ECHO" ) || exit 1
test $(( 1 + 1 )) = 2 || exit 1'
as_test_x='test -x'
as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_unset=as_fn_unset
as_var=MAILPATH
bindir='${exec_prefix}/bin'
build=x86_64-pc-none
build_alias=x86_64
build_cpu=x86_64
build_os=none
build_vendor=pc
cache_file=/dev/null
cross_compiling=no
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_fortran=yes
enable_fortran2003=yes
enable_parallel=yes
enable_production=yes
exec_prefix=NONE
host=x86_64-pc-none
host_cpu=x86_64
host_os=none
host_vendor=pc
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
no_create=
no_recursion=
oldincludedir=/usr/include
pdfdir='${docdir}'
prefix=/opt/hdf5
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
psdir='${docdir}'
saved_user_CFLAGS=
saved_user_CPPFLAGS=
saved_user_CXXFLAGS=
saved_user_FCFLAGS=
saved_user_LDFLAGS=
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
silent=
site=
srcdir=.
subdirs=
sysconfdir='${prefix}/etc'
target=
verbose=
with_szlib=/opt/szip/include,/opt/szip/lib
with_zlib=/opt/zlib/include,/opt/zlib/lib
x_includes=NONE
x_libraries=NONE
configure:3856: result: done
configure:3905: checking if basename works
configure:3911: result: yes
configure:3916: checking if xargs works
configure:3922: result: yes
configure:3930: checking for cached host
configure:3937: result: none
configure:3997: checking for config x86_64-pc-none
configure:4005: result: no
configure:3997: checking for config x86_64-pc-none
configure:4005: result: no
configure:3997: checking for config pc-none
configure:4005: result: no
configure:3997: checking for config pc-none
configure:4005: result: no
configure:3997: checking for config x86_64-none
configure:4005: result: no
configure:3997: checking for config x86_64-none
configure:4005: result: no
configure:3997: checking for config x86_64-pc
configure:4005: result: no
configure:3997: checking for config none
configure:4005: result: no
configure:3997: checking for config none
configure:4005: result: no
configure:3997: checking for config pc
configure:4005: result: no
configure:3997: checking for config x86_64
configure:4005: result: no
configure:4017: checking for config ./config/site-specific/host-turing
configure:4025: result: no
configure:4102: checking for gcc
configure:4118: found /usr/bin/gcc
configure:4129: result: gcc
configure:4358: checking for C compiler version
configure:4367: gcc --version >&5
gcc (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4378: $? = 0
configure:4367: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:4378: $? = 0
configure:4367: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4378: $? = 1
configure:4367: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:4378: $? = 1
configure:4398: checking whether the C compiler works
configure:4420: gcc conftest.c >&5
configure:4424: $? = 0
configure:4472: result: yes
configure:4475: checking for C compiler default output file name
configure:4477: result: a.out
configure:4483: checking for suffix of executables
configure:4490: gcc -o conftest conftest.c >&5
configure:4494: $? = 0
configure:4516: result:
configure:4538: checking whether we are cross compiling
configure:4546: gcc -o conftest conftest.c >&5
configure:4550: $? = 0
configure:4557: ./conftest
configure:4561: $? = 0
configure:4576: result: no
configure:4581: checking for suffix of object files
configure:4603: gcc -c conftest.c >&5
configure:4607: $? = 0
configure:4628: result: o
configure:4632: checking whether we are using the GNU C compiler
configure:4651: gcc -c conftest.c >&5
configure:4651: $? = 0
configure:4660: result: yes
configure:4669: checking whether gcc accepts -g
configure:4689: gcc -c -g conftest.c >&5
configure:4689: $? = 0
configure:4730: result: yes
configure:4747: checking for gcc option to accept ISO C89
configure:4810: gcc -c conftest.c >&5
configure:4810: $? = 0
configure:4823: result: none needed
configure:4848: checking whether gcc understands -c and -o together
configure:4870: gcc -c conftest.c -o conftest2.o
configure:4873: $? = 0
configure:4870: gcc -c conftest.c -o conftest2.o
configure:4873: $? = 0
configure:4885: result: yes
configure:4913: checking for style of include used by make
configure:4941: result: GNU
configure:4967: checking dependency style of gcc
configure:5078: result: gcc3
configure:5100: checking if unsupported combinations of configure options are allowed
configure:5110: result: no
configure:5125: checking if Fortran interface enabled
configure:5143: checking if Fortran 2003 interface enabled
configure:5241: checking for gfortran
configure:5257: found /usr/bin/gfortran
configure:5268: result: gfortran
configure:5294: checking for Fortran compiler version
configure:5303: gfortran --version >&5
GNU Fortran (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5314: $? = 0
configure:5303: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:5314: $? = 0
configure:5303: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5314: $? = 1
configure:5303: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:5314: $? = 1
configure:5323: checking whether we are using the GNU Fortran compiler
configure:5336: gfortran -c conftest.F >&5
configure:5336: $? = 0
configure:5345: result: yes
configure:5351: checking whether gfortran accepts -g
configure:5362: gfortran -c -g conftest.f >&5
configure:5362: $? = 0
configure:5370: result: yes
configure:5403: checking for Fortran flag to compile .f90 files
configure:5423: gfortran -c conftest.f90 >&5
configure:5423: $? = 0
configure:5432: result: none
configure:5567: checking for Fortran compiler version
configure:5576: gfortran --version >&5
GNU Fortran (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:5587: $? = 0
configure:5576: gfortran -v >&5
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:5587: $? = 0
configure:5576: gfortran -V >&5
gfortran: error: unrecognized command line option '-V'
gfortran: fatal error: no input files
compilation terminated.
configure:5587: $? = 1
configure:5576: gfortran -qversion >&5
gfortran: error: unrecognized command line option '-qversion'
gfortran: fatal error: no input files
compilation terminated.
configure:5587: $? = 1
configure:5596: checking whether we are using the GNU Fortran compiler
configure:5618: result: yes
configure:5624: checking whether gfortran accepts -g
configure:5643: result: yes
configure:5672: checking what gfortran does with modules
configure:5725: checking how gfortran finds modules
configure:5737: gfortran -Iconftestdir -c conftest.f90 1>&5
configure:5740: $? = 0
configure:5778: checking how to get verbose linking output from gfortran
configure:5788: gfortran -c -I. conftest.f90 >&5
configure:5788: $? = 0
configure:5806: gfortran -o conftest -I. -v conftest.f90
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Thread model: posix
gcc version 5.1.0 (GCC)
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I . -quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/cc5B0Jtw.s
GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I . --64 -o /tmp/ccK4bt2n.o /tmp/cc5B0Jtw.s
GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.0
Reading specs from /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccWKKPBf.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. /tmp/ccK4bt2n.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
configure:5889: result: -v
configure:5891: checking for Fortran libraries of gfortran
configure:5914: gfortran -o conftest -I. -v conftest.f90
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Thread model: posix
gcc version 5.1.0 (GCC)
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I . -quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/ccyHgq0y.s
GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
  compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version 3.1.2-p11, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -v -I . --64 -o /tmp/cci78AFq.o /tmp/ccyHgq0y.s
GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD version (GNU Binutils) 2.25.0
Reading specs from /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
rename spec lib to liborig
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwIrIli.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. /tmp/cci78AFq.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
configure:6110: result: -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath
configure:6126: checking for dummy main to link with Fortran libraries
configure:6160: gcc -o conftest conftest.c -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6160: $? = 0
configure:6205: result: none
configure:6237: checking for Fortran name-mangling scheme
configure:6250: gfortran -c -I. conftest.f90 >&5
configure:6250: $? = 0
configure:6291: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
/tmp/ccY01qfA.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `foobar'
collect2: error: ld returned 1 exit status
configure:6291: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> /* end confdefs.h. */
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char foobar ();
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return foobar ();
> ;
> return 0;
> }
configure:6291: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6291: $? = 0
configure:6349: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath >&5
configure:6349: $? = 0
configure:6391: result: lower case, underscore, no extra underscore
configure:6460: checking if Fortran compiler supports intrinsic SIZEOF
configure:6469: gfortran -o conftest -I. conftest.f90 >&5
configure:6469: $? = 0
configure:6470: result: yes
configure:6484: checking if Fortran compiler supports intrinsic C_SIZEOF
configure:6496: gfortran -o conftest -I. conftest.f90 >&5
configure:6496: $? = 0
configure:6497: result: yes
configure:6511: checking if Fortran compiler supports intrinsic STORAGE_SIZE
configure:6522: gfortran -o conftest -I. conftest.f90 >&5
configure:6522: $? = 0
configure:6523: result: yes
configure:6539: checking if Fortran default REAL is DOUBLE PRECISION
configure:6566: gfortran -c -I. conftest.f90 >&5
configure:6566: $? = 0
configure:6567: result: no
configure:6582: checking if Fortran compiler version compatible with Fortran 2003 HDF
configure:6601: gfortran -o conftest -I. conftest.f90 >&5
configure:6601: $? = 0
configure:6602: result: yes
configure:6736: checking for g++
configure:6752: found /usr/bin/g++
configure:6763: result: g++
configure:6790: checking for C++ compiler version
configure:6799: g++ --version >&5
g++ (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6810: $? = 0
configure:6799: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared --enable-threads=posix --enable-libmpx --with-system-zlib --with-isl --enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu --disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object --enable-linker-build-id --enable-lto --enable-plugin --enable-install-libiberty --with-linker-hash-style=gnu --enable-gnu-indirect-function --disable-multilib --disable-werror --enable-checking=release --with-default-libstdcxx-abi=c++98
Thread model: posix
gcc version 5.1.0 (GCC)
configure:6810: $? = 0
configure:6799: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:6810: $? = 1
configure:6799: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:6810: $? = 1
configure:6814: checking whether we are using the GNU C++ compiler
configure:6841: g++ -c conftest.cpp >&5
configure:6841: $? = 0
configure:6850: result: yes
configure:6859: checking whether g++ accepts -g
configure:6887: g++ -c -g conftest.cpp >&5
configure:6887: $? = 0
configure:6944: result: yes
configure:6969: checking dependency style of g++
configure:7080: result: gcc3
configure:7100: checking how to run the C++ preprocessor
configure:7127: g++ -E conftest.cpp
configure:7127: $? = 0
configure:7141: g++ -E conftest.cpp
conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7141: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:7166: result: g++ -E
configure:7186: g++ -E conftest.cpp
configure:7186: $? = 0
configure:7200: g++ -E conftest.cpp
conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7200: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:7229: checking if c++ interface enabled
configure:7388: result: no
configure:7409: checking if high level library is enabled
configure:7446: checking for perl
configure:7462: found /usr/bin/perl
configure:7473: result: perl
configure:7496: checking for ar
configure:7512: found /usr/bin/ar
configure:7523: result: ar
configure:7542: checking whether make sets $(MAKE)
configure:7564: result: yes
configure:7581: checking for tr
configure:7599: found /usr/bin/tr
configure:7611: result: /usr/bin/tr
configure:7630: checking if srcdir= and time commands work together
configure:7641: result: no
configure:7693: checking if shared Fortran libraries are supported
configure:7727: result: yes
configure:7812: checking how to print strings
configure:7839: result: printf
configure:7860: checking for a sed that does not truncate output
configure:7924: result: /usr/bin/sed
configure:7942: checking for grep that handles long lines and -e
configure:8000: result: /usr/bin/grep
configure:8005: checking for egrep
configure:8067: result: /usr/bin/grep -E
configure:8072: checking for fgrep
configure:8134: result: /usr/bin/grep -F
configure:8169: checking for ld used by gcc
configure:8236: result: /usr/bin/ld
configure:8243: checking if the linker (/usr/bin/ld) is GNU ld
configure:8258: result: yes
configure:8270: checking for BSD- or MS-compatible name lister (nm)
configure:8319: result: /usr/bin/nm -B
configure:8449: checking the name lister (/usr/bin/nm -B) interface
configure:8456: gcc -c conftest.c >&5
configure:8459: /usr/bin/nm -B "conftest.o"
configure:8462: output
0000000000000000 B some_variable
configure:8469: result: BSD nm
configure:8472: checking whether ln -s works
configure:8476: result: yes
configure:8484: checking the maximum length of command line arguments
configure:8614: result: 1572864
configure:8631: checking whether the shell understands some XSI constructs
configure:8641: result: yes
configure:8645: checking whether the shell understands "+="
configure:8651: result: yes
configure:8686: checking how to convert x86_64-pc-none file names to x86_64-pc-none format
configure:8726: result: func_convert_file_noop
configure:8733: checking how to convert x86_64-pc-none file names to toolchain format
configure:8753: result: func_convert_file_noop
configure:8760: checking for /usr/bin/ld option to reload object files
configure:8767: result: -r
configure:8841: checking for objdump
configure:8857: found /usr/bin/objdump
configure:8868: result: objdump
configure:8900: checking how to recognize dependent libraries
configure:9102: result: unknown
configure:9187: checking for dlltool
configure:9217: result: no
configure:9247: checking how to associate runtime and link libraries
configure:9274: result: printf %s\n
configure:9398: checking for archiver @FILE support
configure:9423: gcc -c conftest.c >&5
configure:9423: $? = 0
configure:9426: ar cru libconftest.a @conftest.lst >&5
configure:9429: $? = 0
configure:9434: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:9437: $? = 1
configure:9449: result: @
configure:9507: checking for strip
configure:9523: found /usr/bin/strip
configure:9534: result: strip
configure:9606: checking for ranlib
configure:9622: found /usr/bin/ranlib
configure:9633: result: ranlib
configure:9735: checking command to parse /usr/bin/nm -B output from gcc object
configure:9855: gcc -c conftest.c >&5
configure:9858: $? = 0
configure:9862: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:9865: $? = 0
configure:9931: gcc -o conftest conftest.c conftstm.o >&5
configure:9934: $? = 0
configure:9972: result: ok
configure:10009: checking for sysroot
configure:10039: result: no
configure:10303: checking for mt
configure:10333: result: no
configure:10353: checking if : is a manifest tool
configure:10359: : '-?'
configure:10367: result: no
configure:11017: checking how to run the C preprocessor
configure:11048: gcc -E conftest.c
configure:11048: $? = 0
configure:11062: gcc -E conftest.c
conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:11062: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:11087: result: gcc -E
configure:11107: gcc -E conftest.c
configure:11107: $? = 0
configure:11121: gcc -E conftest.c
conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:11121: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> /* end confdefs.h. */
> #include <ac_nonexistent.h>
configure:11150: checking for ANSI C header files
configure:11178: gcc -c conftest.c >&5
configure:11178: $? = 0
configure:11251: gcc -o conftest conftest.c >&5
configure:11251: $? = 0
configure:11251: ./conftest
configure:11251: $? = 0
configure:11262: result: yes
configure:11275: checking for sys/types.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for sys/stat.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for stdlib.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for string.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for memory.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for strings.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for inttypes.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for stdint.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11275: checking for unistd.h
configure:11275: gcc -c conftest.c >&5
configure:11275: $? = 0
configure:11275: result: yes
configure:11289: checking for dlfcn.h
configure:11289: gcc -c conftest.c >&5
configure:11289: $? = 0
configure:11289: result: yes
configure:11504: checking for objdir
configure:11519: result: .libs
configure:11786: checking if gcc supports -fno-rtti -fno-exceptions
configure:11804: gcc -c -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:11808: $? = 0
configure:11821: result: no
configure:12148: checking for gcc option to produce PIC
configure:12155: result: -fPIC -DPIC
configure:12163: checking if gcc PIC flag -fPIC -DPIC works
configure:12181: gcc -c -fPIC -DPIC -DPIC conftest.c >&5
configure:12185: $? = 0
configure:12198: result: yes
configure:12227: checking if gcc static flag -static works
configure:12255: result: yes
configure:12270: checking if gcc supports -c -o file.o
configure:12291: gcc -c -o out/conftest2.o conftest.c >&5
configure:12295: $? = 0
configure:12317: result: yes
configure:12325: checking if gcc supports -c -o file.o
configure:12372: result: yes
configure:12405: checking whether the gcc linker (/usr/bin/ld) supports shared libraries
configure:13574: result: yes
configure:13611: checking whether -lc should be explicitly linked in
configure:13619: gcc -c conftest.c >&5
configure:13622: $? = 0
configure:13637: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
configure:13640: $? = 0
configure:13654: result: no
configure:13814: checking dynamic linker characteristics
configure:14555: result: no
configure:14662: checking how to hardcode library paths into programs
configure:14687: result: immediate
configure:14789: checking for shl_load
configure:14789: gcc -o conftest conftest.c >&5
/tmp/cciXRyKJ.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `shl_load'
collect2: error: ld returned 1 exit status
configure:14789: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
> /* Define shl_load to an innocuous variant, in case <limits.h> declares shl_load.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define shl_load innocuous_shl_load
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char shl_load (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef shl_load
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char shl_load ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_shl_load || defined __stub___shl_load
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return shl_load ();
> ;
> return 0;
> }
configure:14789: result: no
configure:14793: checking for shl_load in -ldld
configure:14826: gcc -o conftest conftest.c -ldld >&5
/usr/bin/ld: cannot find -ldld
collect2: error: ld returned 1 exit status
configure:14826: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char shl_load ();
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return shl_load ();
> ;
> return 0;
> }
configure:14835: result: no
configure:14840: checking for dlopen
configure:14840: gcc -o conftest conftest.c >&5
/tmp/ccU8m5gO.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `dlopen'
collect2: error: ld returned 1 exit status
configure:14840: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> /* end confdefs.h. */
> /* Define dlopen to an innocuous variant, in case <limits.h> declares dlopen.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define dlopen innocuous_dlopen
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char dlopen (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef dlopen
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char dlopen ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_dlopen || defined __stub___dlopen
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return dlopen ();
> ;
> return 0;
> }
configure:14840: result: no
configure:14844: checking for dlopen in -ldl
configure:14877: gcc -o conftest conftest.c -ldl >&5
configure:14877: $? = 0
configure:14886: result: yes
configure:15021: checking whether a program can dlopen itself
configure:15101: gcc -o conftest -DHAVE_DLFCN_H -Wl,--export-dynamic conftest.c -ldl >&5
configure:15104: $? = 0
configure:15122: result: yes
configure:15127: checking whether a statically linked program can dlopen itself
configure:15207: gcc -o conftest -DHAVE_DLFCN_H -Wl,--export-dynamic -static conftest.c -ldl >&5
/tmp/ccRkAuGS.o: In function `main':
conftest.c:(.text+0x1e): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/usr/bin/ld: dynamic STT_GNU_IFUNC symbol `strcmp' with pointer equality in `/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libc.a(strcmp.o)' can not be used when making an executable; recompile with -fPIE and relink with -pie
collect2: error: ld returned 1 exit status
configure:15210: $? = 1
configure:15228: result: no
configure:15267: checking whether stripping libraries is possible
configure:15272: result: yes
configure:15307: checking if libtool supports shared libraries
configure:15309: result: no
configure:15312: checking whether to build shared libraries
configure:15333: result: no
configure:15336: checking whether to build static libraries
configure:15340: result: yes
configure:18681: checking if libtool supports shared libraries
configure:18683: result: no
configure:18686: checking whether to build shared libraries
configure:18706: result: no
configure:18709: checking whether to build static libraries
configure:18713: result: yes
configure:18747: gfortran -c -I. conftest.f90 >&5
configure:18750: $? = 0
configure:19179: checking for gfortran option to produce PIC
configure:19186: result: -fPIC
configure:19194: checking if gfortran PIC flag -fPIC works
configure:19212: gfortran -c -I. -fPIC conftest.f90 >&5
configure:19216: $? = 0
configure:19229: result: yes
configure:19252: checking if gfortran static flag -static works
configure:19280: result: no
configure:19292: checking if gfortran supports -c -o file.o
configure:19313: gfortran -c -I. -o out/conftest2.o conftest.f90 >&5
configure:19317: $? = 0
configure:19339: result: yes
configure:19344: checking if gfortran supports -c -o file.o
configure:19391: result: yes
configure:19421: checking whether the gfortran linker (/usr/bin/ld) supports shared libraries
configure:20524: result: yes
configure:20665: checking dynamic linker characteristics
configure:21326: result: no
configure:21379: checking how to hardcode library paths into programs
configure:21404: result: immediate
configure:21462: checking if we should install only statically linked executables
configure:21507: checking if -Wl,-rpath should be used to link shared libs in nondefault directories
configure:21525: result: yes
configure:21544: checking whether make will build with undefined variables
configure:21553: result: yes
configure:21568: checking for production mode
configure:21579: result: production
configure:21618: checking for ceil in -lm
configure:21651: gcc -o conftest conftest.c -lm >&5
conftest.c:33:6: warning: conflicting types for built-in function 'ceil'
char ceil ();
     ^
configure:21651: $? = 0
configure:21660: result: yes
configure:21671: checking for dlopen in -ldl
configure:21713: result: yes
configure:21838: checking for ANSI C header files
configure:21950: result: yes
configure:21958: checking whether time.h and sys/time.h may both be included
configure:21986: gcc -c conftest.c >&5
configure:21986: $? = 0
configure:21993: result: yes
configure:22006: checking sys/resource.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/resource.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/resource.h
configure:22006: result: yes
configure:22006: checking sys/time.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/time.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/time.h
configure:22006: result: yes
configure:22006: checking for unistd.h
configure:22006: result: yes
configure:22006: checking sys/ioctl.h usability
configure:22006: gcc -c conftest.c >&5
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking sys/ioctl.h presence
configure:22006: gcc -E conftest.c
configure:22006: $? = 0
configure:22006: result: yes
configure:22006: checking for sys/ioctl.h
configure:22006: result: yes
configure:22006: checking for sys/stat.h
configure:22006: result: yes
configure:22019: checking sys/socket.h usability
configure:22019: gcc -c conftest.c >&5
configure:22019: $? = 0
configure:22019: result: yes
configure:22019: checking sys/socket.h presence
configure:22019: gcc -E conftest.c
configure:22019: $? = 0
configure:22019: result: yes
configure:22019: checking for sys/socket.h
configure:22019: result: yes
configure:22019: checking for sys/types.h
configure:22019: result: yes
configure:22032: checking stddef.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking stddef.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for stddef.h
configure:22032: result: yes
configure:22032: checking setjmp.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking setjmp.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for setjmp.h
configure:22032: result: yes
configure:22032: checking features.h usability
configure:22032: gcc -c conftest.c >&5
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking features.h presence
configure:22032: gcc -E conftest.c
configure:22032: $? = 0
configure:22032: result: yes
configure:22032: checking for features.h
configure:22032: result: yes
configure:22044: checking dirent.h usability
configure:22044: gcc -c conftest.c >&5
configure:22044: $? = 0
configure:22044: result: yes
configure:22044: checking dirent.h presence
configure:22044: gcc -E conftest.c
configure:22044: $? = 0
configure:22044: result: yes
configure:22044: checking for dirent.h
configure:22044: result: yes
configure:22056: checking for stdint.h
configure:22056: result: yes
configure:22070: checking mach/mach_time.h usability
configure:22070: gcc -c conftest.c >&5
conftest.c:75:28: fatal error: mach/mach_time.h: No such file or directory
compilation terminated.
configure:22070: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <mach/mach_time.h>
configure:22070: result: no
configure:22070: checking mach/mach_time.h presence
configure:22070: gcc -E conftest.c
conftest.c:42:28: fatal error: mach/mach_time.h: No such file or directory
compilation terminated.
configure:22070: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <mach/mach_time.h>
configure:22070: result: no
configure:22070: checking for mach/mach_time.h
configure:22070: result: no
configure:22173: checking io.h usability
configure:22173: gcc -c conftest.c >&5
conftest.c:75:16: fatal error: io.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <io.h>
configure:22173: result: no
configure:22173: checking io.h presence
configure:22173: gcc -E conftest.c
conftest.c:42:16: fatal error: io.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <io.h>
configure:22173: result: no
configure:22173: checking for io.h
configure:22173: result: no
configure:22173: checking winsock2.h usability
configure:22173: gcc -c conftest.c >&5
conftest.c:75:22: fatal error: winsock2.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #include <winsock2.h>
configure:22173: result: no
configure:22173: checking winsock2.h presence
configure:22173: gcc -E conftest.c
conftest.c:42:22: fatal error: winsock2.h: No such file or directory
compilation terminated.
configure:22173: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> /* end confdefs.h. */
> #include <winsock2.h>
configure:22173: result: no
configure:22173: checking for winsock2.h
configure:22173: result: no
configure:22173: checking sys/timeb.h usability
configure:22173: gcc -c conftest.c >&5
configure:22173: $? = 0
configure:22173: result: yes
configure:22173: checking sys/timeb.h presence
configure:22173: gcc -E conftest.c
configure:22173: $? = 0
configure:22173: result: yes
configure:22173: checking for sys/timeb.h
configure:22173: result: yes
configure:22270: checking for _FILE_OFFSET_BITS value needed for large files
configure:22303: gcc -c conftest.c >&5
configure:22303: $? = 0
configure:22343: result: no
configure:22522: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:55:1: error: unknown type name 'off64_t'
off64_t n = 0;
^
configure:22522: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> /* end confdefs.h. */
> #include <sys/types.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> off64_t n = 0;
> ;
> return 0;
> }
configure:22536: result: skipping test for lseek64(), fseeko64 , ftello64, ftruncate64() because off64_t is not defined
configure:22543: checking for fseeko
configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
configure:22543: $? = 0
configure:22543: result: yes
configure:22543: checking for ftello
configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
configure:22543: $? = 0
configure:22543: result: yes
configure:22573: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:59:15: error: storage size of 'sb' isn't known
struct stat64 sb;
              ^
configure:22573: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
>
> #include <sys/types.h>
> #include <sys/stat.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct stat64 sb;
> ;
> return 0;
> }
configure:22587: result: skipping test for stat64() and fstat64()
configure:22595: checking for off_t
configure:22595: gcc -c conftest.c >&5
configure:22595: $? = 0
configure:22595: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:20: error: expected expression before ')' token
if (sizeof ((off_t)))
                   ^
configure:22595: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((off_t)))
> return 0;
> ;
> return 0;
> }
configure:22595: result: yes
configure:22606: checking for size_t
configure:22606: gcc -c conftest.c >&5
configure:22606: $? = 0
configure:22606: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:21: error: expected expression before ')' token
if (sizeof ((size_t)))
                    ^
configure:22606: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((size_t)))
> return 0;
> ;
> return 0;
> }
configure:22606: result: yes
configure:22617: checking for ssize_t
configure:22617: gcc -c conftest.c >&5
configure:22617: $? = 0
configure:22617: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:22: error: expected expression before ')' token
if (sizeof ((ssize_t)))
                     ^
configure:22617: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((ssize_t)))
> return 0;
> ;
> return 0;
> }
configure:22617: result: yes
configure:22628: checking for ptrdiff_t
configure:22628: gcc -c conftest.c >&5
configure:22628: $? = 0
configure:22628: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:24: error: expected expression before ')' token
if (sizeof ((ptrdiff_t)))
                       ^
configure:22628: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> if (sizeof ((ptrdiff_t)))
> return 0;
> ;
> return 0;
> }
configure:22628: result: yes
configure:22639: checking whether byte ordering is bigendian
configure:22654: gcc -c conftest.c >&5
conftest.c:46:9: error: unknown type name 'not'
        not a universal capable compiler
        ^
conftest.c:46:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal'
        not a universal capable compiler
              ^
conftest.c:46:15: error: unknown type name 'universal'
configure:22654: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #ifndef __APPLE_CC__
> not a universal capable compiler
> #endif
> typedef int dummy;
>
configure:22707: gcc -c conftest.c >&5
configure:22707: $? = 0
configure:22733: gcc -c conftest.c >&5
conftest.c: In function 'main':
conftest.c:60:4: error: unknown type name 'not'
   not big endian
   ^
conftest.c:60:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian'
   not big endian
           ^
configure:22733: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> /* end confdefs.h. */
> #include <sys/types.h>
> #include <sys/param.h>
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> #if BYTE_ORDER != BIG_ENDIAN
> not big endian
> #endif
>
> ;
> return 0;
> }
configure:22893: result: no
configure:22915: checking size of char
configure:22920: gcc -o conftest conftest.c -ldl -lm >&5
configure:22920: $? = 0
configure:22920: ./conftest
configure:22920: $? = 0
configure:22934: result: 1
configure:22948: checking size of short
configure:22953: gcc -o conftest conftest.c -ldl -lm >&5
configure:22953: $? = 0
configure:22953: ./conftest
configure:22953: $? = 0
configure:22967: result: 2
configure:22981: checking size of int
configure:22986: gcc -o conftest conftest.c -ldl -lm >&5
configure:22986: $? = 0
configure:22986: ./conftest
configure:22986: $? = 0
configure:23000: result: 4
configure:23014: checking size of unsigned
configure:23019: gcc -o conftest conftest.c -ldl -lm >&5
configure:23019: $? = 0
configure:23019: ./conftest
configure:23019: $? = 0
configure:23033: result: 4
configure:23047: checking size of long
configure:23052: gcc -o conftest conftest.c -ldl -lm >&5
configure:23052: $? = 0
configure:23052: ./conftest
configure:23052: $? = 0
configure:23066: result: 8
configure:23080: checking size of long long
configure:23085: gcc -o conftest conftest.c -ldl -lm >&5
configure:23085: $? = 0
configure:23085: ./conftest
configure:23085: $? = 0
configure:23099: result: 8
configure:23113: checking size of __int64
configure:23118: gcc -o conftest conftest.c -ldl -lm >&5
conftest.c: In function 'longval':
conftest.c:84:57: error: '__int64' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (__int64)); }
                                                        ^
conftest.c:84:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:85:67: error: '__int64' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
                                                                  ^
conftest.c: In function 'main':
conftest.c:103:28: error: '__int64' undeclared (first use in this function)
  if (((long int) (sizeof (__int64))) < 0)
                           ^
configure:23118: $? = 1
configure: program exited with status 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> static long int longval () { return (long int) (sizeof (__int64)); }
> static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
> #include <stdio.h>
> #include <stdlib.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
>
> FILE *f = fopen ("conftest.val", "w");
> if (! f)
> return 1;
> if (((long int) (sizeof (__int64))) < 0)
> {
> long int i = longval ();
> if (i != ((long int) (sizeof (__int64))))
> return 1;
> fprintf (f, "%ld", i);
> }
> else
> {
> unsigned long int i = ulongval ();
> if (i != ((long int) (sizeof (__int64))))
> return 1;
> fprintf (f, "%lu", i);
> }
> /* Do not output a trailing newline, as this causes \r\n confusion
> on some platforms. */
> return ferror (f) || fclose (f) != 0;
>
> ;
> return 0;
> }
configure:23132: result: 0
configure:23146: checking size of float
configure:23151: gcc -o conftest conftest.c -ldl -lm >&5
configure:23151: $? = 0
configure:23151: ./conftest
configure:23151: $? = 0
configure:23165: result: 4
configure:23179: checking size of double
configure:23184: gcc -o conftest conftest.c -ldl -lm >&5
configure:23184: $? = 0
configure:23184: ./conftest
configure:23184: $? = 0
configure:23198: result: 8
configure:23212: checking size of long double
configure:23217: gcc -o conftest conftest.c -ldl -lm >&5
configure:23217: $? = 0
configure:23217: ./conftest
configure:23217: $? = 0
configure:23231: result: 16
configure:23344: checking size of int8_t
configure:23349: gcc -o conftest conftest.c -ldl -lm >&5
configure:23349: $? = 0
configure:23349: ./conftest
configure:23349: $? = 0
configure:23363: result: 1
configure:23377: checking size of uint8_t
configure:23382: gcc -o conftest conftest.c -ldl -lm >&5
configure:23382: $? = 0
configure:23382: ./conftest
configure:23382: $? = 0
configure:23396: result: 1
configure:23410: checking size of int_least8_t
configure:23415: gcc -o conftest conftest.c -ldl -lm >&5
configure:23415: $? = 0
configure:23415: ./conftest
configure:23415: $? = 0
configure:23429: result: 1
configure:23443: checking size of uint_least8_t
configure:23448: gcc -o conftest conftest.c -ldl -lm >&5
configure:23448: $? = 0
configure:23448: ./conftest
configure:23448: $? = 0
configure:23462: result: 1
configure:23476: checking size of int_fast8_t
configure:23481: gcc -o conftest conftest.c -ldl -lm >&5
configure:23481: $? = 0
configure:23481: ./conftest
configure:23481: $? = 0
configure:23495: result: 1
configure:23509: checking size of uint_fast8_t
configure:23514: gcc -o conftest conftest.c -ldl -lm >&5
configure:23514: $? = 0
configure:23514: ./conftest
configure:23514: $? = 0
configure:23528: result: 1
configure:23543: checking size of int16_t
configure:23548: gcc -o conftest conftest.c -ldl -lm >&5
configure:23548: $? = 0
configure:23548: ./conftest
configure:23548: $? = 0
configure:23562: result: 2
configure:23576: checking size of uint16_t
configure:23581: gcc -o conftest conftest.c -ldl -lm >&5
configure:23581: $? = 0
configure:23581: ./conftest
configure:23581: $? = 0
configure:23595: result: 2
configure:23609: checking size of int_least16_t
configure:23614: gcc -o conftest conftest.c -ldl -lm >&5
configure:23614: $? = 0
configure:23614: ./conftest
configure:23614: $? = 0
configure:23628: result: 2
configure:23642: checking size of uint_least16_t
configure:23647: gcc -o conftest conftest.c -ldl -lm >&5
configure:23647: $? = 0
configure:23647: ./conftest
configure:23647: $? = 0
configure:23661: result: 2
configure:23675: checking size of int_fast16_t
configure:23680: gcc -o conftest conftest.c -ldl -lm >&5
configure:23680: $? = 0
configure:23680: ./conftest
configure:23680: $? = 0
configure:23694: result: 8
configure:23708: checking size of uint_fast16_t
configure:23713: gcc -o conftest conftest.c -ldl -lm >&5
configure:23713: $? = 0
configure:23713: ./conftest
configure:23713: $? = 0
configure:23727: result: 8
configure:23742: checking size of int32_t
configure:23747: gcc -o conftest conftest.c -ldl -lm >&5
configure:23747: $? = 0
configure:23747: ./conftest
configure:23747: $? = 0
configure:23761: result: 4
configure:23775: checking size of uint32_t
configure:23780: gcc -o conftest conftest.c -ldl -lm >&5
configure:23780: $? = 0
configure:23780: ./conftest
configure:23780: $? = 0
configure:23794: result: 4
configure:23808: checking size of int_least32_t
configure:23813: gcc -o conftest conftest.c -ldl -lm >&5
configure:23813: $? = 0
configure:23813: ./conftest
configure:23813: $? = 0
configure:23827: result: 4
configure:23841: checking size of uint_least32_t
configure:23846: gcc -o conftest conftest.c -ldl -lm >&5
configure:23846: $? = 0
configure:23846: ./conftest
configure:23846: $? = 0
configure:23860: result: 4
configure:23874: checking size of int_fast32_t
configure:23879: gcc -o conftest conftest.c -ldl -lm >&5
configure:23879: $? = 0
configure:23879: ./conftest
configure:23879: $? = 0
configure:23893: result: 8
configure:23907: checking size of uint_fast32_t
configure:23912: gcc -o conftest conftest.c -ldl -lm >&5
configure:23912: $? = 0
configure:23912: ./conftest
configure:23912: $? = 0
configure:23926: result: 8
configure:23941: checking size of int64_t
configure:23946: gcc -o conftest conftest.c -ldl -lm >&5
configure:23946: $? = 0
configure:23946: ./conftest
configure:23946: $? = 0
configure:23960: result: 8
configure:23974: checking size of uint64_t
configure:23979: gcc -o conftest conftest.c -ldl -lm >&5
configure:23979: $? = 0
configure:23979: ./conftest
configure:23979: $? = 0
configure:23993: result: 8
configure:24007: checking size of int_least64_t
configure:24012: gcc -o conftest conftest.c -ldl -lm >&5
configure:24012: $? = 0
configure:24012: ./conftest
configure:24012: $? = 0
configure:24026: result: 8
configure:24040: checking size of uint_least64_t
configure:24045: gcc -o conftest conftest.c -ldl -lm >&5
configure:24045: $? = 0
configure:24045: ./conftest
configure:24045: $? = 0
configure:24059: result: 8
configure:24073: checking size of int_fast64_t
configure:24078: gcc -o conftest conftest.c -ldl -lm >&5
configure:24078: $? = 0
configure:24078: ./conftest
configure:24078: $? = 0
configure:24092: result: 8
configure:24106: checking size of uint_fast64_t
configure:24111: gcc -o conftest conftest.c -ldl -lm >&5
configure:24111: $? = 0
configure:24111: ./conftest
configure:24111: $? = 0
configure:24125: result: 8
configure:24140: checking size of size_t
configure:24145: gcc -o conftest conftest.c -ldl -lm >&5
configure:24145: $? = 0
configure:24145: ./conftest
configure:24145: $? = 0
configure:24159: result: 8
configure:24173: checking size of ssize_t
configure:24178: gcc -o conftest conftest.c -ldl -lm >&5
configure:24178: $? = 0
configure:24178: ./conftest
configure:24178: $? = 0
configure:24192: result: 8
configure:24206: checking size of ptrdiff_t
configure:24211: gcc -o conftest conftest.c -ldl -lm >&5
configure:24211: $? = 0
configure:24211: ./conftest
configure:24211: $? = 0
configure:24225: result: 8
configure:24243: checking size of off_t
configure:24248: gcc -o conftest conftest.c -ldl -lm >&5
configure:24248: $? = 0
configure:24248: ./conftest
configure:24248: $? = 0
configure:24262: result: 8
configure:24276: checking size of off64_t
configure:24281: gcc -o conftest conftest.c -ldl -lm >&5
conftest.c: In function 'longval':
conftest.c:119:57: error: 'off64_t' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (off64_t)); }
                                                        ^
conftest.c:119:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:120:67: error: 'off64_t' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (off64_t)); }
                                                                  ^
conftest.c: In function 'main':
conftest.c:138:28: error: 'off64_t' undeclared (first use in this function)
  if (((long int) (sizeof (off64_t))) < 0)
                           ^
configure:24281: $? = 1
configure: program exited with status 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> /* end confdefs.h. */
> #include <stdio.h>
> #ifdef HAVE_SYS_TYPES_H
> # include <sys/types.h>
> #endif
> #ifdef HAVE_SYS_STAT_H
> # include <sys/stat.h>
> #endif
> #ifdef STDC_HEADERS
> # include <stdlib.h>
> # include <stddef.h>
> #else
> # ifdef HAVE_STDLIB_H
> # include <stdlib.h>
> # endif
> #endif
> #ifdef HAVE_STRING_H
> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> # include <memory.h>
> # endif
> # include <string.h>
> #endif
> #ifdef HAVE_STRINGS_H
> # include <strings.h>
> #endif
> #ifdef HAVE_INTTYPES_H
> # include <inttypes.h>
> #endif
> #ifdef HAVE_STDINT_H
> # include <stdint.h>
> #endif
> #ifdef HAVE_UNISTD_H
> # include <unistd.h>
> #endif
> static long int longval () { return (long int) (sizeof (off64_t)); }
> static unsigned long int ulongval () { return (long int) (sizeof (off64_t)); }
> #include <stdio.h>
> #include <stdlib.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
>
> FILE *f = fopen ("conftest.val", "w");
> if (! f)
> return 1;
> if (((long int) (sizeof (off64_t))) < 0)
> {
> long int i = longval ();
> if (i != ((long int) (sizeof (off64_t))))
> return 1;
> fprintf (f, "%ld", i);
> }
> else
> {
> unsigned long int i = ulongval ();
> if (i != ((long int) (sizeof (off64_t))))
> return 1;
> fprintf (f, "%lu", i);
> }
> /* Do not output a trailing newline, as this causes \r\n confusion
> on some platforms. */
> return ferror (f) || fclose (f) != 0;
>
> ;
> return 0;
> }
configure:24295: result: 0
configure:24396: checking if dev_t is scalar
configure:24421: gcc -c conftest.c >&5
configure:24421: $? = 0
configure:24425: result: yes
configure:24541: checking for dmalloc library
configure:24543: result: suppressed
configure:24791: checking zlib.h usability
configure:24791: gcc -c -I/opt/zlib/include conftest.c >&5
configure:24791: $? = 0
configure:24791: result: yes
configure:24791: checking zlib.h presence
configure:24791: gcc -E -I/opt/zlib/include conftest.c
configure:24791: $? = 0
configure:24791: result: yes
configure:24791: checking for zlib.h
configure:24791: result: yes
configure:24810: checking for compress2 in -lz
configure:24843: gcc -o conftest -I/opt/zlib/include -L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
configure:24843: $? = 0
configure:24852: result: yes
configure:24872: checking for compress2
configure:24872: gcc -o conftest -I/opt/zlib/include -L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
configure:24872: $? = 0
configure:24872: result: yes
configure:25023: checking szlib.h usability
configure:25023: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25023: $? = 0
configure:25023: result: yes
configure:25023: checking szlib.h presence
configure:25023: gcc -E -I/opt/zlib/include -I/opt/szip/include conftest.c
configure:25023: $? = 0
configure:25023: result: yes
configure:25023: checking for szlib.h
configure:25023: result: yes
configure:25042: checking for SZ_BufftoBuffCompress in -lsz
configure:25075: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25075: $? = 0
configure:25084: result: yes
configure:25107: checking for szlib encoder
configure:25145: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c: In function 'main':
conftest.c:100:17: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration]
                exit(0);
                ^
conftest.c:100:17: warning: incompatible implicit declaration of built-in function 'exit'
conftest.c:100:17: note: include '<stdlib.h>' or provide a declaration of 'exit'
conftest.c:102:17: warning: incompatible implicit declaration of built-in function 'exit'
                exit(1);
                ^
conftest.c:102:17: note: include '<stdlib.h>' or provide a declaration of 'exit'
configure:25145: $? = 0
configure:25145: ./conftest
configure:25145: $? = 0
configure:25163: result: yes
configure:25286: checking for thread safe support
configure:25313: result: no
configure:25611: checking whether CLOCK_MONOTONIC is declared
configure:25611: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25611: $? = 0
configure:25611: result: yes
configure:25626: checking for tm_gmtoff in struct tm
configure:25649: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25649: $? = 0
configure:25653: result: yes
configure:25662: checking for global timezone variable
configure:25692: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25692: $? = 0
configure:25696: result: yes
configure:25711: checking for st_blocks in struct stat
configure:25733: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25733: $? = 0
configure:25737: result: yes
configure:25751: checking for _getvideoconfig
configure:25751: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccsNnkS7.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_getvideoconfig'
collect2: error: ld returned 1 exit status
configure:25751: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define _getvideoconfig to an innocuous variant, in case <limits.h> declares _getvideoconfig.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define _getvideoconfig innocuous__getvideoconfig
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char _getvideoconfig (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef _getvideoconfig
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char _getvideoconfig ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub__getvideoconfig || defined __stub____getvideoconfig
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return _getvideoconfig ();
> ;
> return 0;
> }
configure:25751: result: no
configure:25751: checking for gettextinfo
configure:25751: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/cc4i6cWa.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `gettextinfo'
collect2: error: ld returned 1 exit status
configure:25751: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define gettextinfo to an innocuous variant, in case <limits.h> declares gettextinfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define gettextinfo innocuous_gettextinfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char gettextinfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef gettextinfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char gettextinfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_gettextinfo || defined __stub___gettextinfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return gettextinfo ();
> ;
> return 0;
> }
configure:25751: result: no
configure:25766: checking for GetConsoleScreenBufferInfo
configure:25766: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccSBzVLg.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `GetConsoleScreenBufferInfo'
collect2: error: ld returned 1 exit status
configure:25766: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define GetConsoleScreenBufferInfo to an innocuous variant, in case <limits.h> declares GetConsoleScreenBufferInfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define GetConsoleScreenBufferInfo innocuous_GetConsoleScreenBufferInfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char GetConsoleScreenBufferInfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef GetConsoleScreenBufferInfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char GetConsoleScreenBufferInfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_GetConsoleScreenBufferInfo || defined __stub___GetConsoleScreenBufferInfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return GetConsoleScreenBufferInfo ();
> ;
> return 0;
> }
configure:25766: result: no
configure:25780: checking for _scrsize
configure:25780: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/cciTXu0i.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_scrsize'
collect2: error: ld returned 1 exit status
configure:25780: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> /* end confdefs.h. */
> /* Define _scrsize to an innocuous variant, in case <limits.h> declares _scrsize.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define _scrsize innocuous__scrsize
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char _scrsize (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef _scrsize
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char _scrsize ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub__scrsize || defined __stub____scrsize
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return _scrsize ();
> ;
> return 0;
> }
configure:25780: result: no
configure:25780: checking for ioctl
configure:25780: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25780: $? = 0
configure:25780: result: yes
configure:25790: checking for struct videoconfig
configure:25811: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:110:20: error: storage size of 'w' isn't known
struct videoconfig w; w.numtextcols=0;
                   ^
configure:25811: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> /* end confdefs.h. */
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct videoconfig w; w.numtextcols=0;
> ;
> return 0;
> }
configure:25818: result: no
configure:25823: checking for struct text_info
configure:25844: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:110:18: error: storage size of 'w' isn't known
struct text_info w; w.screenwidth=0;
                 ^
configure:25844: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> /* end confdefs.h. */
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> struct text_info w; w.screenwidth=0;
> ;
> return 0;
> }
configure:25851: result: no
configure:25856: checking for TIOCGWINSZ
configure:25877: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25877: $? = 0
configure:25881: result: yes
configure:25889: checking for TIOCGETD
configure:25910: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:25910: $? = 0
configure:25914: result: yes
configure:25928: checking for library containing clock_gettime
configure:25967: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25967: $? = 0
configure:25984: result: none required
configure:25995: checking for alarm
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for clock_gettime
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for difftime
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for fork
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:126:6: warning: conflicting types for built-in function 'fork'
char fork ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for frexpf
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:127:6: warning: conflicting types for built-in function 'frexpf'
char frexpf ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:25995: checking for frexpl
configure:25995: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:128:6: warning: conflicting types for built-in function 'frexpl'
char frexpl ();
     ^
configure:25995: $? = 0
configure:25995: result: yes
configure:26007: checking for gethostname
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for getpwuid
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for getrusage
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26007: checking for gettimeofday
configure:26007: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26007: $? = 0
configure:26007: result: yes
configure:26019: checking for lstat
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for rand_r
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for random
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26019: $? = 0
configure:26019: result: yes
configure:26019: checking for setsysinfo
configure:26019: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccdLPp70.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `setsysinfo'
collect2: error: ld returned 1 exit status
configure:26019: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> /* end confdefs.h. */
> /* Define setsysinfo to an innocuous variant, in case <limits.h> declares setsysinfo.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define setsysinfo innocuous_setsysinfo
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char setsysinfo (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef setsysinfo
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char setsysinfo ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_setsysinfo || defined __stub___setsysinfo
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return setsysinfo ();
> ;
> return 0;
> }
configure:26019: result: no
configure:26031: checking for signal
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for longjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for setjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for siglongjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26031: checking for sigsetjmp
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
/tmp/ccPMRaFg.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `sigsetjmp'
collect2: error: ld returned 1 exit status
configure:26031: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> #define HAVE_SIGNAL 1
> #define HAVE_LONGJMP 1
> #define HAVE_SETJMP 1
> #define HAVE_SIGLONGJMP 1
> /* end confdefs.h. */
> /* Define sigsetjmp to an innocuous variant, in case <limits.h> declares sigsetjmp.
> For example, HP-UX 11i <limits.h> declares gettimeofday. */
> #define sigsetjmp innocuous_sigsetjmp
>
> /* System header to define __stub macros and hopefully few prototypes,
> which can conflict with char sigsetjmp (); below.
> Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
> <limits.h> exists even on freestanding compilers. */
>
> #ifdef __STDC__
> # include <limits.h>
> #else
> # include <assert.h>
> #endif
>
> #undef sigsetjmp
>
> /* Override any GCC internal prototype to avoid an error.
> Use char because int might match the return type of a GCC
> builtin and then its argument prototype would still apply. */
> #ifdef __cplusplus
> extern "C"
> #endif
> char sigsetjmp ();
> /* The GNU C library defines this for functions which it implements
> to always fail with ENOSYS. Some functions are actually named
> something starting with __ and the normal name is an alias. */
> #if defined __stub_sigsetjmp || defined __stub___sigsetjmp
> choke me
> #endif
>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> return sigsetjmp ();
> ;
> return 0;
> }
configure:26031: result: no
configure:26031: checking for sigprocmask
configure:26031: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26031: $? = 0
configure:26031: result: yes
configure:26043: checking for snprintf
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:141:6: warning: conflicting types for built-in function 'snprintf'
char snprintf ();
     ^
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for srandom
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for strdup
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:143:6: warning: conflicting types for built-in function 'strdup'
char strdup ();
     ^
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for symlink
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26043: checking for system
configure:26043: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26043: $? = 0
configure:26043: result: yes
configure:26055: checking for tmpfile
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for asprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for vasprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for vsnprintf
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:149:6: warning: conflicting types for built-in function 'vsnprintf'
char vsnprintf ();
     ^
configure:26055: $? = 0
configure:26055: result: yes
configure:26055: checking for waitpid
configure:26055: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26055: $? = 0
configure:26055: result: yes
configure:26068: checking for an ANSI C-conforming const
configure:26142: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26142: $? = 0
configure:26149: result: yes
configure:26157: checking for inline
configure:26173: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26173: $? = 0
configure:26181: result: inline
configure:26200: checking for __attribute__ extension
configure:26221: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26221: $? = 0
configure:26225: result: yes
configure:26233: checking for __func__ extension
configure:26254: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26254: $? = 0
configure:26258: result: yes
configure:26265: checking for __FUNCTION__ extension
configure:26286: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26286: $? = 0
configure:26290: result: yes
configure:26297: checking for C99 designated initialization support
configure:26326: gcc -c -I/opt/zlib/include -I/opt/szip/include conftest.c >&5
configure:26326: $? = 0
configure:26330: result: yes
configure:26343: checking how to print long long
configure:26370: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26370: $? = 0
configure:26370: ./conftest
configure:26370: $? = 0
configure:26381: result: %ld and %lu
configure:26393: checking Threads support system scope
configure:26423: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
configure:26423: $? = 0
configure:26423: ./conftest
configure:26423: $? = 0
configure:26439: result: yes
configure:26450: checking for debug flags
configure:26483: result: none
configure:26503: checking whether function stack tracking is enabled
configure:26522: result: no
configure:26530: checking whether metadata trace file code is enabled
configure:26549: result: no
configure:26559: checking for API tracing
configure:26584: result: no
configure:26596: checking for instrumented library
configure:26623: result: no
configure:26634: checking whether to clear file buffers
configure:26645: result: yes
configure:26665: checking whether a memory checking tool will be used
configure:26684: result: no
configure:26803: checking for parallel support files
configure:26815: result: provided by compiler
configure:26820: checking whether a simple MPI-IO C program can be linked
configure:26842: gcc -o conftest -I/opt/zlib/include -I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz -ldl -lm >&5
conftest.c:135:17: fatal error: mpi.h: No such file or directory
compilation terminated.
configure:26842: $? = 1
configure: failed program was:
> /* confdefs.h */
> #define PACKAGE_NAME "HDF5"
> #define PACKAGE_TARNAME "hdf5"
> #define PACKAGE_VERSION "1.8.15"
> #define PACKAGE_STRING "HDF5 1.8.15"
> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
> #define PACKAGE_URL ""
> #define PACKAGE "hdf5"
> #define VERSION "1.8.15"
> #define FC_FUNC(name,NAME) name ## _
> #define FC_FUNC_(name,NAME) name ## _
> #define INCLUDE_HL 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define HAVE_LIBM 1
> #define HAVE_LIBDL 1
> #define STDC_HEADERS 1
> #define TIME_WITH_SYS_TIME 1
> #define HAVE_SYS_RESOURCE_H 1
> #define HAVE_SYS_TIME_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_SYS_IOCTL_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_SYS_SOCKET_H 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_STDDEF_H 1
> #define HAVE_SETJMP_H 1
> #define HAVE_FEATURES_H 1
> #define HAVE_DIRENT_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_SYS_TIMEB_H 1
> #define HAVE_FSEEKO 1
> #define HAVE_FTELLO 1
> #define SIZEOF_CHAR 1
> #define SIZEOF_SHORT 2
> #define SIZEOF_INT 4
> #define SIZEOF_UNSIGNED 4
> #define SIZEOF_LONG 8
> #define SIZEOF_LONG_LONG 8
> #define SIZEOF___INT64 0
> #define SIZEOF_FLOAT 4
> #define SIZEOF_DOUBLE 8
> #define SIZEOF_LONG_DOUBLE 16
> #include <sys/types.h>
> #include <stdint.h>
> #define SIZEOF_INT8_T 1
> #define SIZEOF_UINT8_T 1
> #define SIZEOF_INT_LEAST8_T 1
> #define SIZEOF_UINT_LEAST8_T 1
> #define SIZEOF_INT_FAST8_T 1
> #define SIZEOF_UINT_FAST8_T 1
> #define SIZEOF_INT16_T 2
> #define SIZEOF_UINT16_T 2
> #define SIZEOF_INT_LEAST16_T 2
> #define SIZEOF_UINT_LEAST16_T 2
> #define SIZEOF_INT_FAST16_T 8
> #define SIZEOF_UINT_FAST16_T 8
> #define SIZEOF_INT32_T 4
> #define SIZEOF_UINT32_T 4
> #define SIZEOF_INT_LEAST32_T 4
> #define SIZEOF_UINT_LEAST32_T 4
> #define SIZEOF_INT_FAST32_T 8
> #define SIZEOF_UINT_FAST32_T 8
> #define SIZEOF_INT64_T 8
> #define SIZEOF_UINT64_T 8
> #define SIZEOF_INT_LEAST64_T 8
> #define SIZEOF_UINT_LEAST64_T 8
> #define SIZEOF_INT_FAST64_T 8
> #define SIZEOF_UINT_FAST64_T 8
> #define SIZEOF_SIZE_T 8
> #define SIZEOF_SSIZE_T 8
> #define SIZEOF_PTRDIFF_T 8
> #include <sys/types.h> /*for off_t definition*/
> #define SIZEOF_OFF_T 8
> #define SIZEOF_OFF64_T 0
> #define DEV_T_IS_SCALAR 1
> #define HAVE_ZLIB_H 1
> #define HAVE_LIBZ 1
> #define HAVE_FILTER_DEFLATE 1
> #define HAVE_SZLIB_H 1
> #define HAVE_LIBSZ 1
> #define HAVE_FILTER_SZIP 1
> #define HAVE_TM_GMTOFF 1
> #define HAVE_TIMEZONE 1
> #define HAVE_STAT_ST_BLOCKS 1
> #define HAVE_IOCTL 1
> #define HAVE_TIOCGWINSZ 1
> #define HAVE_TIOCGETD 1
> #define HAVE_ALARM 1
> #define HAVE_CLOCK_GETTIME 1
> #define HAVE_DIFFTIME 1
> #define HAVE_FORK 1
> #define HAVE_FREXPF 1
> #define HAVE_FREXPL 1
> #define HAVE_GETHOSTNAME 1
> #define HAVE_GETPWUID 1
> #define HAVE_GETRUSAGE 1
> #define HAVE_GETTIMEOFDAY 1
> #define HAVE_LSTAT 1
> #define HAVE_RAND_R 1
> #define HAVE_RANDOM 1
> #define HAVE_SIGNAL 1
> #define HAVE_LONGJMP 1
> #define HAVE_SETJMP 1
> #define HAVE_SIGLONGJMP 1
> #define HAVE_SIGPROCMASK 1
> #define HAVE_SNPRINTF 1
> #define HAVE_SRANDOM 1
> #define HAVE_STRDUP 1
> #define HAVE_SYMLINK 1
> #define HAVE_SYSTEM 1
> #define HAVE_TMPFILE 1
> #define HAVE_ASPRINTF 1
> #define HAVE_VASPRINTF 1
> #define HAVE_VSNPRINTF 1
> #define HAVE_WAITPID 1
> #define HAVE_ATTRIBUTE 1
> #define HAVE_C99_FUNC 1
> #define HAVE_FUNCTION 1
> #define HAVE_C99_DESIGNATED_INITIALIZER 1
> #define PRINTF_LL_WIDTH "l"
> #define SYSTEM_SCOPE_THREADS 1
> #define CLEAR_MEMORY 1
> /* end confdefs.h. */
> #include <mpi.h>
> #ifdef FC_DUMMY_MAIN
> #ifndef FC_DUMMY_MAIN_EQ_F77
> # ifdef __cplusplus
> extern "C"
> # endif
> int FC_DUMMY_MAIN() { return 1; }
> #endif
> #endif
> int
> main ()
> {
> MPI_Init(0, (void *)0);
> MPI_File_open(0, (void *)0, 0, 0, (void *)0);
> ;
> return 0;
> }
configure:26846: result: no
configure:26848: error: unable to link a simple MPI-IO C program

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-none
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_fc_dummy_main=none
ac_cv_fc_libs=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath'
ac_cv_fc_mangling='lower case, underscore, no extra underscore'
ac_cv_fc_srcext_f90=none
ac_cv_fortran_dummy_main=none
ac_cv_func_GetConsoleScreenBufferInfo=no
ac_cv_func__getvideoconfig=no
ac_cv_func__scrsize=no
ac_cv_func_alarm=yes
ac_cv_func_asprintf=yes
ac_cv_func_clock_gettime=yes
ac_cv_func_compress2=yes
ac_cv_func_difftime=yes
ac_cv_func_dlopen=no
ac_cv_func_fork=yes
ac_cv_func_frexpf=yes
ac_cv_func_frexpl=yes
ac_cv_func_fseeko=yes
ac_cv_func_ftello=yes
ac_cv_func_gethostname=yes
ac_cv_func_getpwuid=yes
ac_cv_func_getrusage=yes
ac_cv_func_gettextinfo=no
ac_cv_func_gettimeofday=yes
ac_cv_func_ioctl=yes
ac_cv_func_longjmp=yes
ac_cv_func_lstat=yes
ac_cv_func_rand_r=yes
ac_cv_func_random=yes
ac_cv_func_setjmp=yes
ac_cv_func_setsysinfo=no
ac_cv_func_shl_load=no
ac_cv_func_siglongjmp=yes
ac_cv_func_signal=yes
ac_cv_func_sigprocmask=yes
ac_cv_func_sigsetjmp=no
ac_cv_func_snprintf=yes
ac_cv_func_srandom=yes
ac_cv_func_strdup=yes
ac_cv_func_symlink=yes
ac_cv_func_system=yes
ac_cv_func_tmpfile=yes
ac_cv_func_vasprintf=yes
ac_cv_func_vsnprintf=yes
ac_cv_func_waitpid=yes
ac_cv_have_decl_CLOCK_MONOTONIC=yes
ac_cv_header_dirent_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_features_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_io_h=no
ac_cv_header_mach_mach_time_h=no
ac_cv_header_memory_h=yes
ac_cv_header_setjmp_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stddef_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_ioctl_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_socket_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_timeb_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_szlib_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_header_winsock2_h=no
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-pc-none
ac_cv_lib_dl_dlopen=yes
ac_cv_lib_dld_shl_load=no
ac_cv_lib_m_ceil=yes
ac_cv_lib_sz_SZ_BufftoBuffCompress=yes
ac_cv_lib_z_compress2=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_TR=/usr/bin/tr
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AR=ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_PERL=perl
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_fc_v=-v
ac_cv_prog_make_make_set=yes
ac_cv_search_clock_gettime='none required'
ac_cv_sizeof___int64=0
ac_cv_sizeof_char=1
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int16_t=2
ac_cv_sizeof_int32_t=4
ac_cv_sizeof_int64_t=8
ac_cv_sizeof_int8_t=1
ac_cv_sizeof_int=4
ac_cv_sizeof_int_fast16_t=8
ac_cv_sizeof_int_fast32_t=8
ac_cv_sizeof_int_fast64_t=8
ac_cv_sizeof_int_fast8_t=1
ac_cv_sizeof_int_least16_t=2
ac_cv_sizeof_int_least32_t=4
ac_cv_sizeof_int_least64_t=8
ac_cv_sizeof_int_least8_t=1
ac_cv_sizeof_long=8
ac_cv_sizeof_long_double=16
ac_cv_sizeof_long_long=8
ac_cv_sizeof_off64_t=0
ac_cv_sizeof_off_t=8
ac_cv_sizeof_ptrdiff_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=8
ac_cv_sizeof_ssize_t=8
ac_cv_sizeof_uint16_t=2
ac_cv_sizeof_uint32_t=4
ac_cv_sizeof_uint64_t=8
ac_cv_sizeof_uint8_t=1
ac_cv_sizeof_uint_fast16_t=8
ac_cv_sizeof_uint_fast32_t=8
ac_cv_sizeof_uint_fast64_t=8
ac_cv_sizeof_uint_fast8_t=1
ac_cv_sizeof_uint_least16_t=2
ac_cv_sizeof_uint_least32_t=4
ac_cv_sizeof_uint_least64_t=8
ac_cv_sizeof_uint_least8_t=1
ac_cv_sizeof_unsigned=4
ac_cv_sys_file_offset_bits=no
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
hdf5_cv_host=x86_64-pc-none
hdf5_cv_printf_ll=l
hdf5_cv_system_scope_threads=yes
hdf5_cv_szlib_can_encode=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=unknown
lt_cv_dlopen=dlopen
lt_cv_dlopen_libs=-ldl
lt_cv_dlopen_self=yes
lt_cv_dlopen_self_static=no
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_FC=no
lt_cv_prog_gnu_ld=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $lib[^ ]*$$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* $.*$$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* $.*$$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing aclocal-1.14'
ADD_PARALLEL_FILES=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
AM_CXXFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_FCFLAGS=''
AM_LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
AM_MAKEFLAGS=''
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoconf'
AUTOHEADER='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoheader'
AUTOMAKE='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing automake-1.14'
AWK='gawk'
BUILD_ALL_CONDITIONAL_FALSE=''
BUILD_ALL_CONDITIONAL_TRUE=''
BUILD_CXX_CONDITIONAL_FALSE=''
BUILD_CXX_CONDITIONAL_TRUE=''
BUILD_FORTRAN_CONDITIONAL_FALSE=''
BUILD_FORTRAN_CONDITIONAL_TRUE=''
BUILD_HDF5_HL_CONDITIONAL_FALSE=''
BUILD_HDF5_HL_CONDITIONAL_TRUE=''
BUILD_PARALLEL_CONDITIONAL_FALSE=''
BUILD_PARALLEL_CONDITIONAL_TRUE=''
BUILD_SHARED_SZIP_CONDITIONAL_FALSE='#'
BUILD_SHARED_SZIP_CONDITIONAL_TRUE=''
BYTESEX=''
CC='gcc'
CCDEPMODE='depmode=gcc3'
CC_VERSION=''
CFLAGS=' '
CLEARFILEBUF='yes'
CODESTACK='no'
CONFIG_DATE=''
CONFIG_MODE='production'
CONFIG_USER=''
CPP='gcc -E'
CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
CXX='no'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=' '
CXX_VERSION=''
CYGPATH_W='echo'
DEBUG_PKG=''
DEFAULT_API_VERSION=''
DEFS=''
DEPDIR='.deps'
DEPRECATED_SYMBOLS=''
DIRECT_VFD='no'
DIRECT_VFD_CONDITIONAL_FALSE=''
DIRECT_VFD_CONDITIONAL_TRUE=''
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
EXTERNAL_FILTERS='deflate(zlib),szip(encoder)'
F9XMODEXT='mod'
F9XMODFLAG='-I'
F9XSUFFIXFLAG=''
FC2003=''
FC='gfortran'
FCFLAGS='-I. '
FCFLAGS_f90=''
FCLIBS=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../.. -lgfortran -lm -lquadmath'
FC_VERSION=''
FGREP='/usr/bin/grep -F'
FORTRAN_2003_CONDITIONAL_F_FALSE='#'
FORTRAN_2003_CONDITIONAL_F_TRUE=''
FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#'
FORTRAN_HAVE_C_SIZEOF_FALSE='#'
FORTRAN_HAVE_C_SIZEOF_TRUE=''
FORTRAN_HAVE_SIZEOF_FALSE='#'
FORTRAN_HAVE_SIZEOF_TRUE=''
FORTRAN_HAVE_STORAGE_SIZE_FALSE='#'
FORTRAN_HAVE_STORAGE_SIZE_TRUE=''
FORTRAN_SHARED_CONDITIONAL_FALSE='#'
FORTRAN_SHARED_CONDITIONAL_TRUE=''
FSEARCH_DIRS=''
GREP='/usr/bin/grep'
H5_CFLAGS=' '
H5_CPPFLAGS=' -DNDEBUG -UH5_DEBUG_API'
H5_CXXFLAGS=' '
H5_FCFLAGS=' '
H5_FORTRAN_SHARED='yes'
H5_LDFLAGS=''
H5_VERSION=''
HADDR_T=''
HAVE_DMALLOC='no'
HAVE_FORTRAN_2003='yes'
HAVE_PTHREAD=''
HAVE_SHARED_CONDITIONAL_FALSE=''
HAVE_SHARED_CONDITIONAL_TRUE=''
HDF5_HL='yes'
HDF5_INTERFACES=' fortran'
HDF_CXX='no'
HDF_FORTRAN2003='yes'
HDF_FORTRAN='yes'
HID_T=''
HL='hl'
HL_FOR=''
HSIZE_T=''
HSSIZE_T=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTRUMENT='no'
INSTRUMENT_LIBRARY='no'
LD='/usr/bin/ld'
LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
LIBOBJS=''
LIBS='-lsz -lz -ldl -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LL_PATH='/opt/szip/lib'
LN_S='ln -s'
LTLIBOBJS=''
LT_STATIC_EXEC=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/usr/bin/mkdir -p'
MPE='no'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJECT_NAMELEN_DEFAULT_F=''
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='hdf5'
PACKAGE_BUGREPORT='help@hdfgroup.org'
PACKAGE_NAME='HDF5'
PACKAGE_STRING='HDF5 1.8.15'
PACKAGE_TARNAME='hdf5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8.15'
PARALLEL='yes'
PATH_SEPARATOR=':'
PERL='perl'
RANLIB='ranlib'
ROOT=''
RUNPARALLEL=''
RUNSERIAL=''
R_INTEGER=''
R_LARGE=''
SEARCH=''
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
SIZE_T=''
STATIC_EXEC='no'
STATIC_SHARED=''
STRICT_FORMAT_CHECKS=''
STRIP='strip'
TESTPARALLEL=''
THREADSAFE='no'
TIME=''
TR='/usr/bin/tr'
TRACE_API='no'
UNAME_INFO='Linux turing 4.0.4-2-ARCH #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015 x86_64 GNU/Linux'
USE_FILTER_DEFLATE='yes'
USE_FILTER_SZIP='yes'
USE_PLUGINS_CONDITIONAL_FALSE='#'
USE_PLUGINS_CONDITIONAL_TRUE=''
USINGMEMCHECKER='no'
VERSION='1.8.15'
WORDS_BIGENDIAN=''
ac_ct_AR=''
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_FC='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-none'
build_alias='x86_64'
build_cpu='x86_64'
build_os='none'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared='no'
enable_static='yes'
exec_prefix='NONE'
host='x86_64-pc-none'
host_alias=''
host_cpu='x86_64'
host_os='none'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/opt/hdf5'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.15"
#define PACKAGE_STRING "HDF5 1.8.15"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.15"
#define FC_FUNC(name,NAME) name ## _
#define FC_FUNC_(name,NAME) name ## _
#define INCLUDE_HL 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define HAVE_LIBDL 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_DIRENT_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 0
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_SZLIB_H 1
#define HAVE_LIBSZ 1
#define HAVE_FILTER_SZIP 1
#define HAVE_TM_GMTOFF 1
#define HAVE_TIMEZONE 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_CLOCK_GETTIME 1
#define HAVE_DIFFTIME 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_ASPRINTF 1
#define HAVE_VASPRINTF 1
#define HAVE_VSNPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1

configure: exit 1

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

maxim.abalenkov · June 4, 2015, 2:20pm

Dear all,

I managed to configure parallel HDF5. The problem was in the usage of
'sudo'. I had to discard 'sudo' and run the 'configure' script as a simple
user. Also I had to change the order of paths in 'CPPFLAGS' to set
'/opt/mpich/include' first, before '-I/usr/include'. Thank you for the
hints regarding the 'PATH' and 'LD_LIBRARY_PATH' variables. I have already
had them set in my '.bashrc' file. Configuration options that worked were:

export MPICH=/opt/mpich/bin
export PREFIX=/opt/hdf5

export F77=$MPICH/mpifort
export F90=$MPICH/mpifort
export F9X=$MPICH/mpifort
export CC=$MPICH/mpicc
export FFLAGS="-I/usr/include/"
export CFLAGS="-I/usr/include/"
export LDFLAGS="-L/usr/lib/"
export CPPFLAGS="-I/opt/mpich/include/ -I/usr/include/"

echo "F77="$F77
echo "F90="$F90
echo "F9X="$F9X
echo "CC="$CC
echo "FFLAGS="$FFLAGS
echo "CFLAGS="$CFLAGS
echo "LDFLAGS="$LDFLAGS
echo "CPPFLAGS="$CPPFLAGS

./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003 \
           --with-zlib=/opt/zlib --with-szlib=/opt/szip \
           --enable-production --build=x86_64 \
           --enable-parallel

The quest continues, since now I'm facing a problem compiling HDF5. The
compilation fails at file H5test_kind with the folowing error message:

ipo: warning #11010: file format not recognized for /opt/szip/lib
ipo: warning #11010: file format not recognized for /opt/szip/lib
/opt/szip/lib: file not recognized: Is a directory
Makefile:917: recipe for target 'H5test_kind' failed
make[2]: *** [H5test_kind] Error 1
make[2]: Leaving directory
'/home/mabalenk/install/hdf5/hdf5-1.8.15-patch1/fortran/src'
Makefile:736: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
'/home/mabalenk/install/hdf5/hdf5-1.8.15-patch1/fortran'
Makefile:576: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1

···

--
Kind regards,
Maxim Abalenkov

On 4 June 2015 at 14:54, Mohamad Chaarawi <chaarawi@hdfgroup.org> wrote:

I also noticed in your config log that the simple mpi program is being
built with gcc not mpicc:

configure:26842: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
conftest.c:135:17: fatal error: mpi.h: No such file or directory
compilation terminated.

So you need to make sure that your settings here:
>> export F77=$MPICH/mpifort
>> export F90=$MPICH/mpifort
>> export F9X=$MPICH/mpifort
>> export CC=$MPICH/mpicc
actually resolve to something, since config.log says you are not building
with the mpi build wrappers.

Mohamad

-----Original Message-----
From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf
Of Mohamad Chaarawi
Sent: Thursday, June 04, 2015 8:45 AM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] [problem configuring parallel installation of
HDF5]

Could you add mpich to your $LD_LIBRARY_PATH and $PATH and try again?

export PATH=/mpich/install/path/bin/:$PATH
export LD_LIBRARY_PATH=/mpich/install/path/lib:$LD_LIBRARY_PATH

Thanks,
Mohamad

-----Original Message-----
From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf
Of Maxim Abalenkov
Sent: Thursday, June 04, 2015 8:26 AM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] [problem configuring parallel installation of
HDF5]

Hello Pierre,

I have tried to set the CPPFLAGS to /usr/include and /opt/mpich/include,
where MPICH is installed. I have also created a soft link
/usr/include/mpi.h —> /opt/mpich/include/mpi.h. Unfortunately, the error
persists.

—
Kind regards,
Maxim Abalenkov

> On Jun 4, 2015, at 2:03 PM, Pierre de Buyl < > pierre.debuyl@chem.kuleuven.be> wrote:
>
> Can you try with
>
> export CPPFLAGS="-I/usr/include"
>
> (or the appropriate path the the mpi.h headers)?
>
> The complaint by the compiler is about finding "mpi.h".
>
> Regards,
>
> Pierre
>
> On Thu, Jun 04, 2015 at 11:42:22AM +0100, Maxim Abalenkov wrote:
>> Dear all,
>>
>> I experience a problem configuring a parallel installation of HDF5
version
>> 1.8.15. I would like to configure it with Intel Fortran compiler 14.0.0
>> 20130728 and MPICH 3.1.4 on Arch Linux 64-bit. As a test I have done a
>> sequential configuration, that worked. The environment flags I have used
>> were:
>>
>> export F77=$MPICH/mpifort
>> export F90=$MPICH/mpifort
>> export F9X=$MPICH/mpifort
>> export CC=$MPICH/mpicc
>> export FFLAGS="-I/usr/include/"
>> export CFLAGS="-I/usr/include/"
>> export LDFLAGS="-L/usr/lib/"
>>
>> The configure command was launched with the following switches:
>>
>> sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003
\
>> --with-zlib=/opt/zlib/include,/opt/zlib/lib \
>> --with-szlib=/opt/szip/include,/opt/szip/lib \
>> --enable-production --build=x86_64
>>
>> The configure command for parallel HDF has an additional switch
>> (--enable-parallel):
>>
>> sudo ./configure --prefix=$PREFIX --enable-fortran --enable-fortran2003
\
>> --with-zlib=/opt/zlib/include,/opt/zlib/lib \
>> --with-szlib=/opt/szip/include,/opt/szip/lib \
>> --enable-production --build=x86_64 \
>> --enable-parallel
>>
>> Parallel configuration breaks with the following error message:
>>
>> checking whether a simple MPI-IO C program can be linked... no
>> configure: error: unable to link a simple MPI-IO C program
>>
>> As a test I have tried to compile and run "sample_mpio.f90" provided in
the
>> README_parallel file:
>>
>> mpifort sample_mpio.f90 -o sample_mpio
>> mpiexec -n 4 ./sample_mpio
>>
>> The sample program compiles and runs perfectly fine.
>>
>> Running configuration script with the superuser privileges is necessary,
>> since otherwise I receive an access denied messages in the middle of the
>> configuration and configure script fails. Any guidance or hints would be
>> most welcome. The config.log file is attached.
>>
>> --
>> Kind regards,
>> Maxim Abalenkov
>
>> This file contains any messages produced by compilers while
>> running configure, to aid debugging if configure makes a mistake.
>>
>> It was created by HDF5 configure 1.8.15, which was
>> generated by GNU Autoconf 2.69. Invocation command line was
>>
>> $ ./configure --prefix=/opt/hdf5 --enable-fortran --enable-fortran2003
--with-zlib=/opt/zlib/include,/opt/zlib/lib
--with-szlib=/opt/szip/include,/opt/szip/lib --enable-production
--build=x86_64 --enable-parallel
>>
>> ## --------- ##
>> ## Platform. ##
>> ## --------- ##
>>
>> hostname = turing
>> uname -m = x86_64
>> uname -r = 4.0.4-2-ARCH
>> uname -s = Linux
>> uname -v = #1 SMP PREEMPT Fri May 22 03:05:23 UTC 2015
>>
>> /usr/bin/uname -p = unknown
>> /bin/uname -X = unknown
>>
>> /bin/arch = unknown
>> /usr/bin/arch -k = unknown
>> /usr/convex/getsysinfo = unknown
>> /usr/bin/hostinfo = unknown
>> /bin/machine = unknown
>> /usr/bin/oslevel = unknown
>> /bin/universe = unknown
>>
>> PATH: /opt/mpich/bin
>> PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
>> PATH: /opt/intel/composer_xe_2013_sp1.0.080/mpirt/bin/intel64
>> PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64
>> PATH: /opt/intel/composer_xe_2013_sp1.0.080/bin/intel64_mic
>> PATH: /opt/intel/composer_xe_2013_sp1.0.080/debugger/gui/intel64
>> PATH: /usr/local/sbin
>> PATH: /usr/local/bin
>> PATH: /usr/bin
>> PATH: /usr/lib/jvm/default/bin
>> PATH: /usr/lib32/jvm/default/bin
>> PATH: /usr/bin/site_perl
>> PATH: /usr/bin/vendor_perl
>> PATH: /usr/bin/core_perl
>>
>>
>> ## ----------- ##
>> ## Core tests. ##
>> ## ----------- ##
>>
>> configure:3072: checking for a BSD-compatible install
>> configure:3140: result: /usr/bin/install -c
>> configure:3151: checking whether build environment is sane
>> configure:3206: result: yes
>> configure:3357: checking for a thread-safe mkdir -p
>> configure:3396: result: /usr/bin/mkdir -p
>> configure:3403: checking for gawk
>> configure:3419: found /usr/bin/gawk
>> configure:3430: result: gawk
>> configure:3441: checking whether make sets $(MAKE)
>> configure:3463: result: yes
>> configure:3492: checking whether make supports nested variables
>> configure:3509: result: yes
>> configure:3645: checking whether make supports nested variables
>> configure:3662: result: yes
>> configure:3685: checking whether to enable maintainer-specific portions
of Makefiles
>> configure:3694: result: no
>> configure:3738: checking build system type
>> configure:3752: result: x86_64-pc-none
>> configure:3772: checking host system type
>> configure:3785: result: x86_64-pc-none
>> configure:3853: checking shell variables initial values
>> ACLOCAL='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing
aclocal-1.14'
>> AMTAR='$${TAR-tar}'
>> AM_BACKSLASH='\'
>> AM_CFLAGS=
>> AM_CPPFLAGS=
>> AM_CXXFLAGS=
>> AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
>> AM_DEFAULT_VERBOSITY=0
>> AM_FCFLAGS=
>> AM_LDFLAGS=
>> AM_V='$(V)'
>> AUTOCONF='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing
autoconf'
>> AUTOHEADER='${SHELL}
/home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoheader'
>> AUTOMAKE='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing
automake-1.14'
>> AWK=gawk
>> BASH=/bin/sh
>>
BASHOPTS=cmdhist:complete_fullquote:extquote:force_fignore:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
>> BASH_ALIASES=()
>> BASH_ARGC=([0]="8")
>> BASH_ARGV=([0]="--enable-parallel" [1]="--build=x86_64"
[2]="--enable-production"
[3]="--with-szlib=/opt/szip/include,/opt/szip/lib"
[4]="--with-zlib=/opt/zlib/include,/opt/zlib/lib"
[5]="--enable-fortran2003" [6]="--enable-fortran" [7]="--prefix=/opt/hdf5")
>> BASH_CMDS=()
>> BASH_LINENO=([0]="0")
>> BASH_SOURCE=([0]="./configure")
>> BASH_VERSINFO=([0]="4" [1]="3" [2]="39" [3]="1" [4]="release"
[5]="x86_64-unknown-linux-gnu")
>> BASH_VERSION='4.3.39(1)-release'
>> CFLAGS=
>> CPPFLAGS=
>> CXXFLAGS=
>> CYGPATH_W=echo
>> DIRSTACK=()
>> DISPLAY=:0
>> DUALCASE=1
>> ECHO_C=
>> ECHO_N=-n
>> ECHO_T=
>> EUID=0
>> FC=
>> FCFLAGS=
>> GROUPS=()
>> HOME=/root
>> HOSTNAME=turing
>> HOSTTYPE=x86_64
>> IFS='
>> '
>> INSTALL='/usr/bin/install -c'
>> INSTALL_DATA='${INSTALL} -m 644'
>> INSTALL_PROGRAM='${INSTALL}'
>> INSTALL_SCRIPT='${INSTALL}'
>> INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
>> LANG=en_US.UTF-8
>> LANGUAGE=C
>> LC_ALL=C
>> LDFLAGS=
>> LIBOBJS=
>> LINENO=3853
>> LOGNAME=root
>> MACHTYPE=x86_64-unknown-linux-gnu
>> MAINT='#'
>> MAINTAINER_MODE_FALSE=
>> MAINTAINER_MODE_TRUE='#'
>> MAKEFLAGS=
>> MAKEINFO='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing
makeinfo'
>> MFLAGS=
>> MISSING='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing'
>> MKDIR_P='/usr/bin/mkdir -p'
>> OPTERR=1
>> OPTIND=1
>> OSTYPE=linux-gnu
>> PACKAGE=hdf5
>> PACKAGE_BUGREPORT=help@hdfgroup.org
>> PACKAGE_NAME=HDF5
>> PACKAGE_STRING='HDF5 1.8.15'
>> PACKAGE_TARNAME=hdf5
>> PACKAGE_URL=
>> PACKAGE_VERSION=1.8.15
>>
PATH=/opt/mpich/bin:/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64:/opt/intel/composer_xe_2013_sp1.0.080/mpirt/bin/intel64:/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64:/opt/intel/composer_xe_2013_sp1.0.080/bin/intel64_mic:/opt/intel/composer_xe_2013_sp1.0.080/debugger/gui/intel64:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/lib/jvm/default/bin:/usr/lib32/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl
>> PATH_SEPARATOR=:
>> PIPESTATUS=([0]="0")
>> POSIXLY_CORRECT=y
>> PPID=17604
>> PS1='$ '
>> PS2='> '
>> PS4='+ '
>> PWD=/home/mabalenk/install/hdf5/hdf5-1.8.15
>> SET_MAKE=
>> SHELL=/bin/sh
>> SHELLOPTS=braceexpand:hashall:interactive-comments:posix
>> SHLVL=1
>> SUDO_COMMAND='./configure --prefix=/opt/hdf5 --enable-fortran
--enable-fortran2003 --with-zlib=/opt/zlib/include,/opt/zlib/lib
--with-szlib=/opt/szip/include,/opt/szip/lib --enable-production
--build=x86_64 --enable-parallel'
>> SUDO_GID=1000
>> SUDO_UID=1000
>> SUDO_USER=mabalenk
>> TERM=xterm
>> UID=0
>> USER=root
>> USERNAME=root
>> USE_MAINTAINER_MODE=no
>> VERSION=1.8.15
>> XAUTHORITY=/tmp/xauth-1000-_0
>> _='checking shell variables initial values... '
>> _am_tools='gnutar pax cpio none'
>> ac_abs_confdir=/home/mabalenk/install/hdf5/hdf5-1.8.15
>> ac_arg=build_alias=x86_64
>> ac_aux_dir=bin
>> ac_build_alias=x86_64
>> ac_cache_corrupted=false
>> ac_clean_files=
>> ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
>> ac_compiler_gnu=
>> ac_confdir=.
>> ac_config_commands=' pubconf'
>> ac_config_guess='/bin/sh bin/config.guess'
>> ac_config_headers=' src/H5config.h'
>> ac_config_libobj_dir=.
>> ac_config_sub='/bin/sh bin/config.sub'
>> ac_configure='/bin/sh bin/configure'
>> ac_configure_args=' '\''--prefix=/opt/hdf5'\'' '\''--enable-fortran'\''
'\''--enable-fortran2003'\''
'\''--with-zlib=/opt/zlib/include,/opt/zlib/lib'\''
'\''--with-szlib=/opt/szip/include,/opt/szip/lib'\''
'\''--enable-production'\'' '\''--build=x86_64'\''
'\''--enable-parallel'\'' '\''build_alias=x86_64'\'''
>> ac_cpp='$CPP $CPPFLAGS'
>> ac_cv_build=x86_64-pc-none
>> ac_cv_env_CCC_set=
>> ac_cv_env_CCC_value=
>> ac_cv_env_CC_set=
>> ac_cv_env_CC_value=
>> ac_cv_env_CFLAGS_set=
>> ac_cv_env_CFLAGS_value=
>> ac_cv_env_CPPFLAGS_set=
>> ac_cv_env_CPPFLAGS_value=
>> ac_cv_env_CPP_set=
>> ac_cv_env_CPP_value=
>> ac_cv_env_CXXCPP_set=
>> ac_cv_env_CXXCPP_value=
>> ac_cv_env_CXXFLAGS_set=
>> ac_cv_env_CXXFLAGS_value=
>> ac_cv_env_CXX_set=
>> ac_cv_env_CXX_value=
>> ac_cv_env_FCFLAGS_set=
>> ac_cv_env_FCFLAGS_value=
>> ac_cv_env_FC_set=
>> ac_cv_env_FC_value=
>> ac_cv_env_LDFLAGS_set=
>> ac_cv_env_LDFLAGS_value=
>> ac_cv_env_LIBS_set=
>> ac_cv_env_LIBS_value=
>> ac_cv_env_build_alias_set=set
>> ac_cv_env_build_alias_value=x86_64
>> ac_cv_env_host_alias_set=
>> ac_cv_env_host_alias_value=
>> ac_cv_env_target_alias_set=
>> ac_cv_env_target_alias_value=
>> ac_cv_host=x86_64-pc-none
>> ac_cv_path_install='/usr/bin/install -c'
>> ac_cv_path_mkdir=/usr/bin/mkdir
>> ac_cv_prog_AWK=gawk
>> ac_cv_prog_make_make_set=yes
>> ac_dashdash=
>> ac_default_prefix=/home/mabalenk/install/hdf5/hdf5-1.8.15/hdf5
>> ac_dir=bin
>> ac_env_CCC_set=
>> ac_env_CCC_value=
>> ac_env_CC_set=
>> ac_env_CC_value=
>> ac_env_CFLAGS_set=
>> ac_env_CFLAGS_value=
>> ac_env_CPPFLAGS_set=
>> ac_env_CPPFLAGS_value=
>> ac_env_CPP_set=
>> ac_env_CPP_value=
>> ac_env_CXXCPP_set=
>> ac_env_CXXCPP_value=
>> ac_env_CXXFLAGS_set=
>> ac_env_CXXFLAGS_value=
>> ac_env_CXX_set=
>> ac_env_CXX_value=
>> ac_env_FCFLAGS_set=
>> ac_env_FCFLAGS_value=
>> ac_env_FC_set=
>> ac_env_FC_value=
>> ac_env_LDFLAGS_set=
>> ac_env_LDFLAGS_value=
>> ac_env_LIBS_set=
>> ac_env_LIBS_value=
>> ac_env_build_alias_set=set
>> ac_env_build_alias_value=x86_64
>> ac_env_host_alias_set=
>> ac_env_host_alias_value=
>> ac_env_target_alias_set=
>> ac_env_target_alias_value=
>> ac_exec_ext=
>> ac_ext=c
>> ac_hostname=turing
>> ac_includes_default='#include <stdio.h>
>> #ifdef HAVE_SYS_TYPES_H
>> # include <sys/types.h>
>> #endif
>> #ifdef HAVE_SYS_STAT_H
>> # include <sys/stat.h>
>> #endif
>> #ifdef STDC_HEADERS
>> # include <stdlib.h>
>> # include <stddef.h>
>> #else
>> # ifdef HAVE_STDLIB_H
>> # include <stdlib.h>
>> # endif
>> #endif
>> #ifdef HAVE_STRING_H
>> # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> # include <memory.h>
>> # endif
>> # include <string.h>
>> #endif
>> #ifdef HAVE_STRINGS_H
>> # include <strings.h>
>> #endif
>> #ifdef HAVE_INTTYPES_H
>> # include <inttypes.h>
>> #endif
>> #ifdef HAVE_STDINT_H
>> # include <stdint.h>
>> #endif
>> #ifdef HAVE_UNISTD_H
>> # include <unistd.h>
>> #endif'
>> ac_init_help=
>> ac_init_version=false
>> ac_install_sh='bin/install-sh -c'
>> ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS
conftest.$ac_ext $LIBS >&5'
>> ac_ls_di='58503 .'
>> ac_make=make
>> ac_msg='sources are in ., but `cd .'\'' does not work'
>> ac_must_keep_next=false
>> ac_new_set=
>> ac_new_val=
>> ac_old_set=
>> ac_old_val=
>> ac_optarg=yes
>> ac_option=--enable-parallel
>> ac_pass=2
>> ac_precious_vars='build_alias
>> host_alias
>> target_alias
>> CC
>> CFLAGS
>> LDFLAGS
>> LIBS
>> CPPFLAGS
>> FC
>> FCFLAGS
>> CXX
>> CXXFLAGS
>> CCC
>> CXXCPP
>> CPP'
>> ac_prev=
>> ac_prog=gawk
>> ac_pwd=/home/mabalenk/install/hdf5/hdf5-1.8.15
>> ac_pwd_ls_di='58503 .'
>> ac_save_IFS='
>> '
>> ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
>> ac_signal=0
>> ac_site_file=/opt/hdf5/etc/config.site
>> ac_site_file1=/opt/hdf5/share/config.site
>> ac_site_file2=/opt/hdf5/etc/config.site
>> ac_srcdir_defaulted=yes
>> ac_subst_files=
>> ac_subst_vars='am__EXEEXT_FALSE
>> am__EXEEXT_TRUE
>> LTLIBOBJS
>> LIBOBJS
>> HAVE_SHARED_CONDITIONAL_FALSE
>> HAVE_SHARED_CONDITIONAL_TRUE
>> SEARCH
>> BUILD_HDF5_HL_CONDITIONAL_FALSE
>> BUILD_HDF5_HL_CONDITIONAL_TRUE
>> BUILD_FORTRAN_CONDITIONAL_FALSE
>> BUILD_FORTRAN_CONDITIONAL_TRUE
>> BUILD_PARALLEL_CONDITIONAL_FALSE
>> BUILD_PARALLEL_CONDITIONAL_TRUE
>> BUILD_CXX_CONDITIONAL_FALSE
>> BUILD_CXX_CONDITIONAL_TRUE
>> STRICT_FORMAT_CHECKS
>> DEFAULT_API_VERSION
>> DEPRECATED_SYMBOLS
>> BUILD_ALL_CONDITIONAL_FALSE
>> BUILD_ALL_CONDITIONAL_TRUE
>> ROOT
>> CXX_VERSION
>> FC_VERSION
>> CC_VERSION
>> WORDS_BIGENDIAN
>> BYTESEX
>> CONFIG_MODE
>> CONFIG_USER
>> CONFIG_DATE
>> H5_VERSION
>> DIRECT_VFD_CONDITIONAL_FALSE
>> DIRECT_VFD_CONDITIONAL_TRUE
>> ADD_PARALLEL_FILES
>> USINGMEMCHECKER
>> CLEARFILEBUF
>> INSTRUMENT_LIBRARY
>> TRACE_API
>> DEBUG_PKG
>> HAVE_PTHREAD
>> BUILD_SHARED_SZIP_CONDITIONAL_FALSE
>> BUILD_SHARED_SZIP_CONDITIONAL_TRUE
>> LL_PATH
>> USE_FILTER_SZIP
>> USE_FILTER_DEFLATE
>> AM_MAKEFLAGS
>> LT_STATIC_EXEC
>> USE_PLUGINS_CONDITIONAL_FALSE
>> USE_PLUGINS_CONDITIONAL_TRUE
>> CPP
>> OTOOL64
>> OTOOL
>> LIPO
>> NMEDIT
>> DSYMUTIL
>> MANIFEST_TOOL
>> RANLIB
>> ac_ct_AR
>> DLLTOOL
>> OBJDUMP
>> LN_S
>> NM
>> ac_ct_DUMPBIN
>> DUMPBIN
>> LD
>> FGREP
>> EGREP
>> GREP
>> SED
>> LIBTOOL
>> FORTRAN_SHARED_CONDITIONAL_FALSE
>> FORTRAN_SHARED_CONDITIONAL_TRUE
>> H5_FORTRAN_SHARED
>> TESTPARALLEL
>> RUNPARALLEL
>> RUNSERIAL
>> PARALLEL
>> TIME
>> TR
>> AR
>> PERL
>> HL_FOR
>> HL
>> CXXCPP
>> am__fastdepCXX_FALSE
>> am__fastdepCXX_TRUE
>> CXXDEPMODE
>> ac_ct_CXX
>> CXXFLAGS
>> FORTRAN_DEFAULT_REALisDBLE_F_FALSE
>> FORTRAN_DEFAULT_REALisDBLE_F_TRUE
>> FORTRAN_2003_CONDITIONAL_F_FALSE
>> FORTRAN_2003_CONDITIONAL_F_TRUE
>> FORTRAN_HAVE_STORAGE_SIZE_FALSE
>> FORTRAN_HAVE_STORAGE_SIZE_TRUE
>> FORTRAN_HAVE_C_SIZEOF_FALSE
>> FORTRAN_HAVE_C_SIZEOF_TRUE
>> FORTRAN_HAVE_SIZEOF_FALSE
>> FORTRAN_HAVE_SIZEOF_TRUE
>> FCLIBS
>> F9XMODEXT
>> F9XMODFLAG
>> FSEARCH_DIRS
>> F9XSUFFIXFLAG
>> FCFLAGS_f90
>> ac_ct_FC
>> FCFLAGS
>> OBJECT_NAMELEN_DEFAULT_F
>> SIZE_T
>> HID_T
>> HSSIZE_T
>> HSIZE_T
>> HADDR_T
>> R_INTEGER
>> R_LARGE
>> HAVE_FORTRAN_2003
>> HDF5_INTERFACES
>> am__fastdepCC_FALSE
>> am__fastdepCC_TRUE
>> CCDEPMODE
>> am__nodep
>> AMDEPBACKSLASH
>> AMDEP_FALSE
>> AMDEP_TRUE
>> am__quote
>> am__include
>> DEPDIR
>> OBJEXT
>> EXEEXT
>> ac_ct_CC
>> LDFLAGS
>> CFLAGS
>> CC
>> UNAME_INFO
>> enable_static
>> enable_shared
>> STATIC_SHARED
>> THREADSAFE
>> DIRECT_VFD
>> HAVE_DMALLOC
>> CODESTACK
>> INSTRUMENT
>> HDF5_HL
>> CXX
>> HDF_CXX
>> FC2003
>> FC
>> HDF_FORTRAN2003
>> HDF_FORTRAN
>> STATIC_EXEC
>> MPE
>> EXTERNAL_FILTERS
>> AM_LDFLAGS
>> AM_CPPFLAGS
>> AM_CXXFLAGS
>> AM_FCFLAGS
>> AM_CFLAGS
>> H5_LDFLAGS
>> H5_CXXFLAGS
>> H5_FCFLAGS
>> H5_CPPFLAGS
>> H5_CFLAGS
>> CPPFLAGS
>> host_os
>> host_vendor
>> host_cpu
>> host
>> build_os
>> build_vendor
>> build_cpu
>> build
>> MAINT
>> MAINTAINER_MODE_FALSE
>> MAINTAINER_MODE_TRUE
>> AM_BACKSLASH
>> AM_DEFAULT_VERBOSITY
>> AM_DEFAULT_V
>> AM_V
>> am__untar
>> am__tar
>> AMTAR
>> am__leading_dot
>> SET_MAKE
>> AWK
>> mkdir_p
>> MKDIR_P
>> INSTALL_STRIP_PROGRAM
>> STRIP
>> install_sh
>> MAKEINFO
>> AUTOHEADER
>> AUTOMAKE
>> AUTOCONF
>> ACLOCAL
>> VERSION
>> PACKAGE
>> CYGPATH_W
>> am__isrc
>> INSTALL_DATA
>> INSTALL_SCRIPT
>> INSTALL_PROGRAM
>> target_alias
>> host_alias
>> build_alias
>> LIBS
>> ECHO_T
>> ECHO_N
>> ECHO_C
>> DEFS
>> mandir
>> localedir
>> libdir
>> psdir
>> pdfdir
>> dvidir
>> htmldir
>> infodir
>> docdir
>> oldincludedir
>> includedir
>> localstatedir
>> sharedstatedir
>> sysconfdir
>> datadir
>> datarootdir
>> libexecdir
>> sbindir
>> bindir
>> program_transform_name
>> prefix
>> exec_prefix
>> PACKAGE_URL
>> PACKAGE_BUGREPORT
>> PACKAGE_STRING
>> PACKAGE_VERSION
>> PACKAGE_TARNAME
>> PACKAGE_NAME
>> PATH_SEPARATOR
>> SHELL'
>> ac_tool_prefix=
>> ac_unique_file=src/H5.c
>> ac_unrecognized_opts=
>> ac_unrecognized_sep=
>> ac_user_opts='
>> enable_option_checking
>> enable_silent_rules
>> enable_maintainer_mode
>> enable_dependency_tracking
>> enable_unsupported
>> enable_fortran
>> enable_fortran2003
>> enable_cxx
>> enable_hl
>> enable_shared
>> enable_static
>> with_pic
>> enable_fast_install
>> with_gnu_ld
>> with_sysroot
>> enable_libtool_lock
>> enable_static_exec
>> enable_sharedlib_rpath
>> enable_production
>> with_fnord
>> with_dmalloc
>> with_zlib
>> with_szlib
>> enable_threadsafe
>> with_pthread
>> enable_debug
>> enable_codestack
>> enable_metadata_trace_file
>> enable_trace
>> enable_instrument
>> enable_clear_file_buffers
>> enable_using_memchecker
>> enable_parallel
>> with_mpe
>> enable_direct_vfd
>> with_default_plugindir
>> enable_dconv_exception
>> enable_dconv_accuracy
>> enable_build_all
>> enable_deprecated_symbols
>> with_default_api_version
>> enable_strict_format_checks
>> enable_embedded_libinfo
>> '
>> ac_useropt=parallel
>> ac_useropt_orig=parallel
>> ac_val='${datarootdir}/man'
>> ac_var=CPP
>> ac_word=gawk
>> am__api_version=1.14
>> am__leading_dot=.
>> am__tar='$${TAR-tar} chof - "$$tardir"'
>> am__untar='$${TAR-tar} xf -'
>> am_aux_dir=/home/mabalenk/install/hdf5/hdf5-1.8.15/bin
>> am_cv_make_support_nested_variables=yes
>> am_lf='
>> '
>> am_make=make
>> am_missing_run='${SHELL}
/home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing '
>> am_sleep_pid=17744
>> as_basename=basename
>> as_bourne_compatible='if test -n "${ZSH_VERSION+set}" && (emulate sh)
>/dev/null 2>&1; then :
>> emulate sh
>> NULLCMD=:
>> # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
>> # is contrary to our usage. Disable this feature.
>> alias -g '\''${1+"$@"}'\''='\''"$@"'\''
>> setopt NO_GLOB_SUBST
>> else
>> case `(set -o) 2>/dev/null` in #(
>> *posix*) :
>> set -o posix ;; #(
>> *) :
>> ;;
>> esac
>> fi
>> '
>> as_cr_LETTERS=ABCDEFGHIJKLMNOPQRSTUVWXYZ
>> as_cr_Letters=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ
>>
as_cr_alnum=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789
>> as_cr_digits=0123456789
>> as_cr_letters=abcdefghijklmnopqrstuvwxyz
>> as_dir=/usr/bin
>> as_dirname=dirname
>> as_echo='printf %s\n'
>> as_echo_n='printf %s'
>> as_executable_p=as_fn_executable_p
>> as_expr=expr
>> as_have_required=yes
>> as_lineno_1=477
>> as_lineno_1a=477
>> as_lineno_2=478
>> as_lineno_2a=478
>> as_ln_s='ln -s'
>> as_me=configure
>> as_mkdir_p='mkdir -p "$as_dir"'
>> as_myself=./configure
>> as_nl='
>> '
>> as_required='as_fn_return () { (exit $1); }
>> as_fn_success () { as_fn_return 0; }
>> as_fn_failure () { as_fn_return 1; }
>> as_fn_ret_success () { return 0; }
>> as_fn_ret_failure () { return 1; }
>>
>> exitcode=0
>> as_fn_success || { exitcode=1; echo as_fn_success failed.; }
>> as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
>> as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
>> as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
>> if ( set x; as_fn_ret_success y && test x = "$1" ); then :
>>
>> else
>> exitcode=1; echo positional parameters were not saved.
>> fi
>> test x$exitcode = x0 || exit 1
>> test -x / || exit 1'
>> as_save_IFS='
>> '
>> as_suggested=' as_lineno_1=198 as_lineno_1a=$LINENO
>> as_lineno_2=199 as_lineno_2a=$LINENO
>> eval '\''test "x$as_lineno_1'\''$as_run'\''" !=
"x$as_lineno_2'\''$as_run'\''" &&
>> test "x`expr $as_lineno_1'\''$as_run'\'' + 1`" =
"x$as_lineno_2'\''$as_run'\''"'\'' || exit 1
>>
>> test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || (
>>
ECHO='\''\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'\''
>> ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO
>> ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO$ECHO
>> PATH=/empty FPATH=/empty; export PATH FPATH
>> test "X`printf %s $ECHO`" = "X$ECHO" \
>> >> test "X`print -r -- $ECHO`" = "X$ECHO" ) || exit 1
>> test $(( 1 + 1 )) = 2 || exit 1'
>> as_test_x='test -x'
>> as_tr_cpp='eval sed
'\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
>> as_tr_sh='eval sed
'\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
>> as_unset=as_fn_unset
>> as_var=MAILPATH
>> bindir='${exec_prefix}/bin'
>> build=x86_64-pc-none
>> build_alias=x86_64
>> build_cpu=x86_64
>> build_os=none
>> build_vendor=pc
>> cache_file=/dev/null
>> cross_compiling=no
>> datadir='${datarootdir}'
>> datarootdir='${prefix}/share'
>> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
>> dvidir='${docdir}'
>> enable_fortran=yes
>> enable_fortran2003=yes
>> enable_parallel=yes
>> enable_production=yes
>> exec_prefix=NONE
>> host=x86_64-pc-none
>> host_cpu=x86_64
>> host_os=none
>> host_vendor=pc
>> htmldir='${docdir}'
>> includedir='${prefix}/include'
>> infodir='${datarootdir}/info'
>> install_sh='${SHELL}
/home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
>> libdir='${exec_prefix}/lib'
>> libexecdir='${exec_prefix}/libexec'
>> localedir='${datarootdir}/locale'
>> localstatedir='${prefix}/var'
>> mandir='${datarootdir}/man'
>> mkdir_p='$(MKDIR_P)'
>> no_create=
>> no_recursion=
>> oldincludedir=/usr/include
>> pdfdir='${docdir}'
>> prefix=/opt/hdf5
>> program_prefix=NONE
>> program_suffix=NONE
>> program_transform_name=s,x,x,
>> psdir='${docdir}'
>> saved_user_CFLAGS=
>> saved_user_CPPFLAGS=
>> saved_user_CXXFLAGS=
>> saved_user_FCFLAGS=
>> saved_user_LDFLAGS=
>> sbindir='${exec_prefix}/sbin'
>> sharedstatedir='${prefix}/com'
>> silent=
>> site=
>> srcdir=.
>> subdirs=
>> sysconfdir='${prefix}/etc'
>> target=
>> verbose=
>> with_szlib=/opt/szip/include,/opt/szip/lib
>> with_zlib=/opt/zlib/include,/opt/zlib/lib
>> x_includes=NONE
>> x_libraries=NONE
>> configure:3856: result: done
>> configure:3905: checking if basename works
>> configure:3911: result: yes
>> configure:3916: checking if xargs works
>> configure:3922: result: yes
>> configure:3930: checking for cached host
>> configure:3937: result: none
>> configure:3997: checking for config x86_64-pc-none
>> configure:4005: result: no
>> configure:3997: checking for config x86_64-pc-none
>> configure:4005: result: no
>> configure:3997: checking for config pc-none
>> configure:4005: result: no
>> configure:3997: checking for config pc-none
>> configure:4005: result: no
>> configure:3997: checking for config x86_64-none
>> configure:4005: result: no
>> configure:3997: checking for config x86_64-none
>> configure:4005: result: no
>> configure:3997: checking for config x86_64-pc
>> configure:4005: result: no
>> configure:3997: checking for config none
>> configure:4005: result: no
>> configure:3997: checking for config none
>> configure:4005: result: no
>> configure:3997: checking for config pc
>> configure:4005: result: no
>> configure:3997: checking for config x86_64
>> configure:4005: result: no
>> configure:4017: checking for config ./config/site-specific/host-turing
>> configure:4025: result: no
>> configure:4102: checking for gcc
>> configure:4118: found /usr/bin/gcc
>> configure:4129: result: gcc
>> configure:4358: checking for C compiler version
>> configure:4367: gcc --version >&5
>> gcc (GCC) 5.1.0
>> Copyright (C) 2015 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions. There is
NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
>>
>> configure:4378: $? = 0
>> configure:4367: gcc -v >&5
>> Using built-in specs.
>> COLLECT_GCC=gcc
>>
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
>> Target: x86_64-unknown-linux-gnu
>> Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr
--libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man
--infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/
--enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared
--enable-threads=posix --enable-libmpx --with-system-zlib --with-isl
--enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu
--disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object
--enable-linker-build-id --enable-lto --enable-plugin
--enable-install-libiberty --with-linker-hash-style=gnu
--enable-gnu-indirect-function --disable-multilib --disable-werror
--enable-checking=release --with-default-libstdcxx-abi=c++98
>> Thread model: posix
>> gcc version 5.1.0 (GCC)
>> configure:4378: $? = 0
>> configure:4367: gcc -V >&5
>> gcc: error: unrecognized command line option '-V'
>> gcc: fatal error: no input files
>> compilation terminated.
>> configure:4378: $? = 1
>> configure:4367: gcc -qversion >&5
>> gcc: error: unrecognized command line option '-qversion'
>> gcc: fatal error: no input files
>> compilation terminated.
>> configure:4378: $? = 1
>> configure:4398: checking whether the C compiler works
>> configure:4420: gcc conftest.c >&5
>> configure:4424: $? = 0
>> configure:4472: result: yes
>> configure:4475: checking for C compiler default output file name
>> configure:4477: result: a.out
>> configure:4483: checking for suffix of executables
>> configure:4490: gcc -o conftest conftest.c >&5
>> configure:4494: $? = 0
>> configure:4516: result:
>> configure:4538: checking whether we are cross compiling
>> configure:4546: gcc -o conftest conftest.c >&5
>> configure:4550: $? = 0
>> configure:4557: ./conftest
>> configure:4561: $? = 0
>> configure:4576: result: no
>> configure:4581: checking for suffix of object files
>> configure:4603: gcc -c conftest.c >&5
>> configure:4607: $? = 0
>> configure:4628: result: o
>> configure:4632: checking whether we are using the GNU C compiler
>> configure:4651: gcc -c conftest.c >&5
>> configure:4651: $? = 0
>> configure:4660: result: yes
>> configure:4669: checking whether gcc accepts -g
>> configure:4689: gcc -c -g conftest.c >&5
>> configure:4689: $? = 0
>> configure:4730: result: yes
>> configure:4747: checking for gcc option to accept ISO C89
>> configure:4810: gcc -c conftest.c >&5
>> configure:4810: $? = 0
>> configure:4823: result: none needed
>> configure:4848: checking whether gcc understands -c and -o together
>> configure:4870: gcc -c conftest.c -o conftest2.o
>> configure:4873: $? = 0
>> configure:4870: gcc -c conftest.c -o conftest2.o
>> configure:4873: $? = 0
>> configure:4885: result: yes
>> configure:4913: checking for style of include used by make
>> configure:4941: result: GNU
>> configure:4967: checking dependency style of gcc
>> configure:5078: result: gcc3
>> configure:5100: checking if unsupported combinations of configure
options are allowed
>> configure:5110: result: no
>> configure:5125: checking if Fortran interface enabled
>> configure:5143: checking if Fortran 2003 interface enabled
>> configure:5241: checking for gfortran
>> configure:5257: found /usr/bin/gfortran
>> configure:5268: result: gfortran
>> configure:5294: checking for Fortran compiler version
>> configure:5303: gfortran --version >&5
>> GNU Fortran (GCC) 5.1.0
>> Copyright (C) 2015 Free Software Foundation, Inc.
>>
>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>> You may redistribute copies of GNU Fortran
>> under the terms of the GNU General Public License.
>> For more information about these matters, see the file named COPYING
>>
>> configure:5314: $? = 0
>> configure:5303: gfortran -v >&5
>> Using built-in specs.
>> COLLECT_GCC=gfortran
>>
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
>> Target: x86_64-unknown-linux-gnu
>> Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr
--libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man
--infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/
--enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared
--enable-threads=posix --enable-libmpx --with-system-zlib --with-isl
--enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu
--disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object
--enable-linker-build-id --enable-lto --enable-plugin
--enable-install-libiberty --with-linker-hash-style=gnu
--enable-gnu-indirect-function --disable-multilib --disable-werror
--enable-checking=release --with-default-libstdcxx-abi=c++98
>> Thread model: posix
>> gcc version 5.1.0 (GCC)
>> configure:5314: $? = 0
>> configure:5303: gfortran -V >&5
>> gfortran: error: unrecognized command line option '-V'
>> gfortran: fatal error: no input files
>> compilation terminated.
>> configure:5314: $? = 1
>> configure:5303: gfortran -qversion >&5
>> gfortran: error: unrecognized command line option '-qversion'
>> gfortran: fatal error: no input files
>> compilation terminated.
>> configure:5314: $? = 1
>> configure:5323: checking whether we are using the GNU Fortran compiler
>> configure:5336: gfortran -c conftest.F >&5
>> configure:5336: $? = 0
>> configure:5345: result: yes
>> configure:5351: checking whether gfortran accepts -g
>> configure:5362: gfortran -c -g conftest.f >&5
>> configure:5362: $? = 0
>> configure:5370: result: yes
>> configure:5403: checking for Fortran flag to compile .f90 files
>> configure:5423: gfortran -c conftest.f90 >&5
>> configure:5423: $? = 0
>> configure:5432: result: none
>> configure:5567: checking for Fortran compiler version
>> configure:5576: gfortran --version >&5
>> GNU Fortran (GCC) 5.1.0
>> Copyright (C) 2015 Free Software Foundation, Inc.
>>
>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>> You may redistribute copies of GNU Fortran
>> under the terms of the GNU General Public License.
>> For more information about these matters, see the file named COPYING
>>
>> configure:5587: $? = 0
>> configure:5576: gfortran -v >&5
>> Using built-in specs.
>> COLLECT_GCC=gfortran
>>
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
>> Target: x86_64-unknown-linux-gnu
>> Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr
--libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man
--infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/
--enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared
--enable-threads=posix --enable-libmpx --with-system-zlib --with-isl
--enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu
--disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object
--enable-linker-build-id --enable-lto --enable-plugin
--enable-install-libiberty --with-linker-hash-style=gnu
--enable-gnu-indirect-function --disable-multilib --disable-werror
--enable-checking=release --with-default-libstdcxx-abi=c++98
>> Thread model: posix
>> gcc version 5.1.0 (GCC)
>> configure:5587: $? = 0
>> configure:5576: gfortran -V >&5
>> gfortran: error: unrecognized command line option '-V'
>> gfortran: fatal error: no input files
>> compilation terminated.
>> configure:5587: $? = 1
>> configure:5576: gfortran -qversion >&5
>> gfortran: error: unrecognized command line option '-qversion'
>> gfortran: fatal error: no input files
>> compilation terminated.
>> configure:5587: $? = 1
>> configure:5596: checking whether we are using the GNU Fortran compiler
>> configure:5618: result: yes
>> configure:5624: checking whether gfortran accepts -g
>> configure:5643: result: yes
>> configure:5672: checking what gfortran does with modules
>> configure:5725: checking how gfortran finds modules
>> configure:5737: gfortran -Iconftestdir -c conftest.f90 1>&5
>> configure:5740: $? = 0
>> configure:5778: checking how to get verbose linking output from gfortran
>> configure:5788: gfortran -c -I. conftest.f90 >&5
>> configure:5788: $? = 0
>> configure:5806: gfortran -o conftest -I. -v conftest.f90
>> Using built-in specs.
>> Target: x86_64-unknown-linux-gnu
>> Thread model: posix
>> gcc version 5.1.0 (GCC)
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I .
-quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase
conftest -version -fintrinsic-modules-path
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/cc5B0Jtw.s
>> GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
>> compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version
3.1.2-p11, MPC version 1.0.3
>> GGC heuristics: --param ggc-min-expand=100 --param
ggc-min-heapsize=131072
>> GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
>> compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version
3.1.2-p11, MPC version 1.0.3
>> GGC heuristics: --param ggc-min-expand=100 --param
ggc-min-heapsize=131072
>> as -v -I . --64 -o /tmp/ccK4bt2n.o /tmp/cc5B0Jtw.s
>> GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD
version (GNU Binutils) 2.25.0
>> Reading specs from
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
>> rename spec lib to liborig
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so
-plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
-plugin-opt=-fresolution=/tmp/ccWKKPBf.res
-plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc
-plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm
-plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc
-plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s
-plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu
-m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
/tmp/ccK4bt2n.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc
-lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
>> configure:5889: result: -v
>> configure:5891: checking for Fortran libraries of gfortran
>> configure:5914: gfortran -o conftest -I. -v conftest.f90
>> Using built-in specs.
>> Target: x86_64-unknown-linux-gnu
>> Thread model: posix
>> gcc version 5.1.0 (GCC)
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/f951 conftest.f90 -I .
-quiet -dumpbase conftest.f90 -mtune=generic -march=x86-64 -auxbase
conftest -version -fintrinsic-modules-path
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/finclude -o /tmp/ccyHgq0y.s
>> GNU Fortran (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
>> compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version
3.1.2-p11, MPC version 1.0.3
>> GGC heuristics: --param ggc-min-expand=100 --param
ggc-min-heapsize=131072
>> GNU Fortran2008 (GCC) version 5.1.0 (x86_64-unknown-linux-gnu)
>> compiled by GNU C version 5.1.0, GMP version 6.0.0, MPFR version
3.1.2-p11, MPC version 1.0.3
>> GGC heuristics: --param ggc-min-expand=100 --param
ggc-min-heapsize=131072
>> as -v -I . --64 -o /tmp/cci78AFq.o /tmp/ccyHgq0y.s
>> GNU assembler version 2.25.0 (x86_64-unknown-linux-gnu) using BFD
version (GNU Binutils) 2.25.0
>> Reading specs from
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libgfortran.spec
>> rename spec lib to liborig
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/collect2 -plugin
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/liblto_plugin.so
-plugin-opt=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
-plugin-opt=-fresolution=/tmp/ccwIrIli.res
-plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc
-plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm
-plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc
-plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s
-plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu
-m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crt1.o
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crti.o
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtbegin.o
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
/tmp/cci78AFq.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc
-lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/crtend.o
/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/crtn.o
>> configure:6110: result: -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
-lgfortran -lm -lquadmath
>> configure:6126: checking for dummy main to link with Fortran libraries
>> configure:6160: gcc -o conftest conftest.c
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
-lgfortran -lm -lquadmath >&5
>> configure:6160: $? = 0
>> configure:6205: result: none
>> configure:6237: checking for Fortran name-mangling scheme
>> configure:6250: gfortran -c -I. conftest.f90 >&5
>> configure:6250: $? = 0
>> configure:6291: gcc -o conftest conftest.c cfortran_test.o
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
-lgfortran -lm -lquadmath >&5
>> /tmp/ccY01qfA.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to `foobar'
>> collect2: error: ld returned 1 exit status
>> configure:6291: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > /* end confdefs.h. */
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char foobar ();
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return foobar ();
>> > ;
>> > return 0;
>> > }
>> configure:6291: gcc -o conftest conftest.c cfortran_test.o
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
-lgfortran -lm -lquadmath >&5
>> configure:6291: $? = 0
>> configure:6349: gcc -o conftest conftest.c cfortran_test.o
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
-lgfortran -lm -lquadmath >&5
>> configure:6349: $? = 0
>> configure:6391: result: lower case, underscore, no extra underscore
>> configure:6460: checking if Fortran compiler supports intrinsic SIZEOF
>> configure:6469: gfortran -o conftest -I. conftest.f90 >&5
>> configure:6469: $? = 0
>> configure:6470: result: yes
>> configure:6484: checking if Fortran compiler supports intrinsic C_SIZEOF
>> configure:6496: gfortran -o conftest -I. conftest.f90 >&5
>> configure:6496: $? = 0
>> configure:6497: result: yes
>> configure:6511: checking if Fortran compiler supports intrinsic
STORAGE_SIZE
>> configure:6522: gfortran -o conftest -I. conftest.f90 >&5
>> configure:6522: $? = 0
>> configure:6523: result: yes
>> configure:6539: checking if Fortran default REAL is DOUBLE PRECISION
>> configure:6566: gfortran -c -I. conftest.f90 >&5
>> configure:6566: $? = 0
>> configure:6567: result: no
>> configure:6582: checking if Fortran compiler version compatible with
Fortran 2003 HDF
>> configure:6601: gfortran -o conftest -I. conftest.f90 >&5
>> configure:6601: $? = 0
>> configure:6602: result: yes
>> configure:6736: checking for g++
>> configure:6752: found /usr/bin/g++
>> configure:6763: result: g++
>> configure:6790: checking for C++ compiler version
>> configure:6799: g++ --version >&5
>> g++ (GCC) 5.1.0
>> Copyright (C) 2015 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions. There is
NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
>>
>> configure:6810: $? = 0
>> configure:6799: g++ -v >&5
>> Using built-in specs.
>> COLLECT_GCC=g++
>>
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/lto-wrapper
>> Target: x86_64-unknown-linux-gnu
>> Configured with: /build/gcc/src/gcc-5-20150519/configure --prefix=/usr
--libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man
--infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/
--enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++ --enable-shared
--enable-threads=posix --enable-libmpx --with-system-zlib --with-isl
--enable-__cxa_atexit --disable-libunwind-exceptions --enable-clocale=gnu
--disable-libstdcxx-pch --disable-libssp --enable-gnu-unique-object
--enable-linker-build-id --enable-lto --enable-plugin
--enable-install-libiberty --with-linker-hash-style=gnu
--enable-gnu-indirect-function --disable-multilib --disable-werror
--enable-checking=release --with-default-libstdcxx-abi=c++98
>> Thread model: posix
>> gcc version 5.1.0 (GCC)
>> configure:6810: $? = 0
>> configure:6799: g++ -V >&5
>> g++: error: unrecognized command line option '-V'
>> g++: fatal error: no input files
>> compilation terminated.
>> configure:6810: $? = 1
>> configure:6799: g++ -qversion >&5
>> g++: error: unrecognized command line option '-qversion'
>> g++: fatal error: no input files
>> compilation terminated.
>> configure:6810: $? = 1
>> configure:6814: checking whether we are using the GNU C++ compiler
>> configure:6841: g++ -c conftest.cpp >&5
>> configure:6841: $? = 0
>> configure:6850: result: yes
>> configure:6859: checking whether g++ accepts -g
>> configure:6887: g++ -c -g conftest.cpp >&5
>> configure:6887: $? = 0
>> configure:6944: result: yes
>> configure:6969: checking dependency style of g++
>> configure:7080: result: gcc3
>> configure:7100: checking how to run the C++ preprocessor
>> configure:7127: g++ -E conftest.cpp
>> configure:7127: $? = 0
>> configure:7141: g++ -E conftest.cpp
>> conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or
directory
>> compilation terminated.
>> configure:7141: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > /* end confdefs.h. */
>> > #include <ac_nonexistent.h>
>> configure:7166: result: g++ -E
>> configure:7186: g++ -E conftest.cpp
>> configure:7186: $? = 0
>> configure:7200: g++ -E conftest.cpp
>> conftest.cpp:13:28: fatal error: ac_nonexistent.h: No such file or
directory
>> compilation terminated.
>> configure:7200: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > /* end confdefs.h. */
>> > #include <ac_nonexistent.h>
>> configure:7229: checking if c++ interface enabled
>> configure:7388: result: no
>> configure:7409: checking if high level library is enabled
>> configure:7446: checking for perl
>> configure:7462: found /usr/bin/perl
>> configure:7473: result: perl
>> configure:7496: checking for ar
>> configure:7512: found /usr/bin/ar
>> configure:7523: result: ar
>> configure:7542: checking whether make sets $(MAKE)
>> configure:7564: result: yes
>> configure:7581: checking for tr
>> configure:7599: found /usr/bin/tr
>> configure:7611: result: /usr/bin/tr
>> configure:7630: checking if srcdir= and time commands work together
>> configure:7641: result: no
>> configure:7693: checking if shared Fortran libraries are supported
>> configure:7727: result: yes
>> configure:7812: checking how to print strings
>> configure:7839: result: printf
>> configure:7860: checking for a sed that does not truncate output
>> configure:7924: result: /usr/bin/sed
>> configure:7942: checking for grep that handles long lines and -e
>> configure:8000: result: /usr/bin/grep
>> configure:8005: checking for egrep
>> configure:8067: result: /usr/bin/grep -E
>> configure:8072: checking for fgrep
>> configure:8134: result: /usr/bin/grep -F
>> configure:8169: checking for ld used by gcc
>> configure:8236: result: /usr/bin/ld
>> configure:8243: checking if the linker (/usr/bin/ld) is GNU ld
>> configure:8258: result: yes
>> configure:8270: checking for BSD- or MS-compatible name lister (nm)
>> configure:8319: result: /usr/bin/nm -B
>> configure:8449: checking the name lister (/usr/bin/nm -B) interface
>> configure:8456: gcc -c conftest.c >&5
>> configure:8459: /usr/bin/nm -B "conftest.o"
>> configure:8462: output
>> 0000000000000000 B some_variable
>> configure:8469: result: BSD nm
>> configure:8472: checking whether ln -s works
>> configure:8476: result: yes
>> configure:8484: checking the maximum length of command line arguments
>> configure:8614: result: 1572864
>> configure:8631: checking whether the shell understands some XSI
constructs
>> configure:8641: result: yes
>> configure:8645: checking whether the shell understands "+="
>> configure:8651: result: yes
>> configure:8686: checking how to convert x86_64-pc-none file names to
x86_64-pc-none format
>> configure:8726: result: func_convert_file_noop
>> configure:8733: checking how to convert x86_64-pc-none file names to
toolchain format
>> configure:8753: result: func_convert_file_noop
>> configure:8760: checking for /usr/bin/ld option to reload object files
>> configure:8767: result: -r
>> configure:8841: checking for objdump
>> configure:8857: found /usr/bin/objdump
>> configure:8868: result: objdump
>> configure:8900: checking how to recognize dependent libraries
>> configure:9102: result: unknown
>> configure:9187: checking for dlltool
>> configure:9217: result: no
>> configure:9247: checking how to associate runtime and link libraries
>> configure:9274: result: printf %s\n
>> configure:9398: checking for archiver @FILE support
>> configure:9423: gcc -c conftest.c >&5
>> configure:9423: $? = 0
>> configure:9426: ar cru libconftest.a @conftest.lst >&5
>> configure:9429: $? = 0
>> configure:9434: ar cru libconftest.a @conftest.lst >&5
>> ar: conftest.o: No such file or directory
>> configure:9437: $? = 1
>> configure:9449: result: @
>> configure:9507: checking for strip
>> configure:9523: found /usr/bin/strip
>> configure:9534: result: strip
>> configure:9606: checking for ranlib
>> configure:9622: found /usr/bin/ranlib
>> configure:9633: result: ranlib
>> configure:9735: checking command to parse /usr/bin/nm -B output from
gcc object
>> configure:9855: gcc -c conftest.c >&5
>> configure:9858: $? = 0
>> configure:9862: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[
]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][ ]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2
\2/p' | sed '/ __gnu_lto/d' \> conftest.nm
>> configure:9865: $? = 0
>> configure:9931: gcc -o conftest conftest.c conftstm.o >&5
>> configure:9934: $? = 0
>> configure:9972: result: ok
>> configure:10009: checking for sysroot
>> configure:10039: result: no
>> configure:10303: checking for mt
>> configure:10333: result: no
>> configure:10353: checking if : is a manifest tool
>> configure:10359: : '-?'
>> configure:10367: result: no
>> configure:11017: checking how to run the C preprocessor
>> configure:11048: gcc -E conftest.c
>> configure:11048: $? = 0
>> configure:11062: gcc -E conftest.c
>> conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or
directory
>> compilation terminated.
>> configure:11062: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > /* end confdefs.h. */
>> > #include <ac_nonexistent.h>
>> configure:11087: result: gcc -E
>> configure:11107: gcc -E conftest.c
>> configure:11107: $? = 0
>> configure:11121: gcc -E conftest.c
>> conftest.c:14:28: fatal error: ac_nonexistent.h: No such file or
directory
>> compilation terminated.
>> configure:11121: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > /* end confdefs.h. */
>> > #include <ac_nonexistent.h>
>> configure:11150: checking for ANSI C header files
>> configure:11178: gcc -c conftest.c >&5
>> configure:11178: $? = 0
>> configure:11251: gcc -o conftest conftest.c >&5
>> configure:11251: $? = 0
>> configure:11251: ./conftest
>> configure:11251: $? = 0
>> configure:11262: result: yes
>> configure:11275: checking for sys/types.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11275: checking for sys/stat.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11275: checking for stdlib.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11275: checking for string.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11275: checking for memory.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11275: checking for strings.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11275: checking for inttypes.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11275: checking for stdint.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11275: checking for unistd.h
>> configure:11275: gcc -c conftest.c >&5
>> configure:11275: $? = 0
>> configure:11275: result: yes
>> configure:11289: checking for dlfcn.h
>> configure:11289: gcc -c conftest.c >&5
>> configure:11289: $? = 0
>> configure:11289: result: yes
>> configure:11504: checking for objdir
>> configure:11519: result: .libs
>> configure:11786: checking if gcc supports -fno-rtti -fno-exceptions
>> configure:11804: gcc -c -fno-rtti -fno-exceptions conftest.c >&5
>> cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++
but not for C
>> configure:11808: $? = 0
>> configure:11821: result: no
>> configure:12148: checking for gcc option to produce PIC
>> configure:12155: result: -fPIC -DPIC
>> configure:12163: checking if gcc PIC flag -fPIC -DPIC works
>> configure:12181: gcc -c -fPIC -DPIC -DPIC conftest.c >&5
>> configure:12185: $? = 0
>> configure:12198: result: yes
>> configure:12227: checking if gcc static flag -static works
>> configure:12255: result: yes
>> configure:12270: checking if gcc supports -c -o file.o
>> configure:12291: gcc -c -o out/conftest2.o conftest.c >&5
>> configure:12295: $? = 0
>> configure:12317: result: yes
>> configure:12325: checking if gcc supports -c -o file.o
>> configure:12372: result: yes
>> configure:12405: checking whether the gcc linker (/usr/bin/ld) supports
shared libraries
>> configure:13574: result: yes
>> configure:13611: checking whether -lc should be explicitly linked in
>> configure:13619: gcc -c conftest.c >&5
>> configure:13622: $? = 0
>> configure:13637: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname
-Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1
>> configure:13640: $? = 0
>> configure:13654: result: no
>> configure:13814: checking dynamic linker characteristics
>> configure:14555: result: no
>> configure:14662: checking how to hardcode library paths into programs
>> configure:14687: result: immediate
>> configure:14789: checking for shl_load
>> configure:14789: gcc -o conftest conftest.c >&5
>> /tmp/cciXRyKJ.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to `shl_load'
>> collect2: error: ld returned 1 exit status
>> configure:14789: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > /* end confdefs.h. */
>> > /* Define shl_load to an innocuous variant, in case <limits.h>
declares shl_load.
>> > For example, HP-UX 11i <limits.h> declares gettimeofday. */
>> > #define shl_load innocuous_shl_load
>> >
>> > /* System header to define __stub macros and hopefully few prototypes,
>> > which can conflict with char shl_load (); below.
>> > Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
>> > <limits.h> exists even on freestanding compilers. */
>> >
>> > #ifdef __STDC__
>> > # include <limits.h>
>> > #else
>> > # include <assert.h>
>> > #endif
>> >
>> > #undef shl_load
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char shl_load ();
>> > /* The GNU C library defines this for functions which it implements
>> > to always fail with ENOSYS. Some functions are actually named
>> > something starting with __ and the normal name is an alias. */
>> > #if defined __stub_shl_load || defined __stub___shl_load
>> > choke me
>> > #endif
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return shl_load ();
>> > ;
>> > return 0;
>> > }
>> configure:14789: result: no
>> configure:14793: checking for shl_load in -ldld
>> configure:14826: gcc -o conftest conftest.c -ldld >&5
>> /usr/bin/ld: cannot find -ldld
>> collect2: error: ld returned 1 exit status
>> configure:14826: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > /* end confdefs.h. */
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char shl_load ();
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return shl_load ();
>> > ;
>> > return 0;
>> > }
>> configure:14835: result: no
>> configure:14840: checking for dlopen
>> configure:14840: gcc -o conftest conftest.c >&5
>> /tmp/ccU8m5gO.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to `dlopen'
>> collect2: error: ld returned 1 exit status
>> configure:14840: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > /* end confdefs.h. */
>> > /* Define dlopen to an innocuous variant, in case <limits.h> declares
dlopen.
>> > For example, HP-UX 11i <limits.h> declares gettimeofday. */
>> > #define dlopen innocuous_dlopen
>> >
>> > /* System header to define __stub macros and hopefully few prototypes,
>> > which can conflict with char dlopen (); below.
>> > Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
>> > <limits.h> exists even on freestanding compilers. */
>> >
>> > #ifdef __STDC__
>> > # include <limits.h>
>> > #else
>> > # include <assert.h>
>> > #endif
>> >
>> > #undef dlopen
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char dlopen ();
>> > /* The GNU C library defines this for functions which it implements
>> > to always fail with ENOSYS. Some functions are actually named
>> > something starting with __ and the normal name is an alias. */
>> > #if defined __stub_dlopen || defined __stub___dlopen
>> > choke me
>> > #endif
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return dlopen ();
>> > ;
>> > return 0;
>> > }
>> configure:14840: result: no
>> configure:14844: checking for dlopen in -ldl
>> configure:14877: gcc -o conftest conftest.c -ldl >&5
>> configure:14877: $? = 0
>> configure:14886: result: yes
>> configure:15021: checking whether a program can dlopen itself
>> configure:15101: gcc -o conftest -DHAVE_DLFCN_H
-Wl,--export-dynamic conftest.c -ldl >&5
>> configure:15104: $? = 0
>> configure:15122: result: yes
>> configure:15127: checking whether a statically linked program can
dlopen itself
>> configure:15207: gcc -o conftest -DHAVE_DLFCN_H
-Wl,--export-dynamic -static conftest.c -ldl >&5
>> /tmp/ccRkAuGS.o: In function `main':
>> conftest.c:(.text+0x1e): warning: Using 'dlopen' in statically linked
applications requires at runtime the shared libraries from the glibc
version used for linking
>> /usr/bin/ld: dynamic STT_GNU_IFUNC symbol `strcmp' with pointer
equality in
`/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib/libc.a(strcmp.o)'
can not be used when making an executable; recompile with -fPIE and relink
with -pie
>> collect2: error: ld returned 1 exit status
>> configure:15210: $? = 1
>> configure:15228: result: no
>> configure:15267: checking whether stripping libraries is possible
>> configure:15272: result: yes
>> configure:15307: checking if libtool supports shared libraries
>> configure:15309: result: no
>> configure:15312: checking whether to build shared libraries
>> configure:15333: result: no
>> configure:15336: checking whether to build static libraries
>> configure:15340: result: yes
>> configure:18681: checking if libtool supports shared libraries
>> configure:18683: result: no
>> configure:18686: checking whether to build shared libraries
>> configure:18706: result: no
>> configure:18709: checking whether to build static libraries
>> configure:18713: result: yes
>> configure:18747: gfortran -c -I. conftest.f90 >&5
>> configure:18750: $? = 0
>> configure:19179: checking for gfortran option to produce PIC
>> configure:19186: result: -fPIC
>> configure:19194: checking if gfortran PIC flag -fPIC works
>> configure:19212: gfortran -c -I. -fPIC conftest.f90 >&5
>> configure:19216: $? = 0
>> configure:19229: result: yes
>> configure:19252: checking if gfortran static flag -static works
>> configure:19280: result: no
>> configure:19292: checking if gfortran supports -c -o file.o
>> configure:19313: gfortran -c -I. -o out/conftest2.o conftest.f90 >&5
>> configure:19317: $? = 0
>> configure:19339: result: yes
>> configure:19344: checking if gfortran supports -c -o file.o
>> configure:19391: result: yes
>> configure:19421: checking whether the gfortran linker (/usr/bin/ld)
supports shared libraries
>> configure:20524: result: yes
>> configure:20665: checking dynamic linker characteristics
>> configure:21326: result: no
>> configure:21379: checking how to hardcode library paths into programs
>> configure:21404: result: immediate
>> configure:21462: checking if we should install only statically linked
executables
>> configure:21507: checking if -Wl,-rpath should be used to link shared
libs in nondefault directories
>> configure:21525: result: yes
>> configure:21544: checking whether make will build with undefined
variables
>> configure:21553: result: yes
>> configure:21568: checking for production mode
>> configure:21579: result: production
>> configure:21618: checking for ceil in -lm
>> configure:21651: gcc -o conftest conftest.c -lm >&5
>> conftest.c:33:6: warning: conflicting types for built-in function 'ceil'
>> char ceil ();
>> ^
>> configure:21651: $? = 0
>> configure:21660: result: yes
>> configure:21671: checking for dlopen in -ldl
>> configure:21713: result: yes
>> configure:21838: checking for ANSI C header files
>> configure:21950: result: yes
>> configure:21958: checking whether time.h and sys/time.h may both be
included
>> configure:21986: gcc -c conftest.c >&5
>> configure:21986: $? = 0
>> configure:21993: result: yes
>> configure:22006: checking sys/resource.h usability
>> configure:22006: gcc -c conftest.c >&5
>> configure:22006: $? = 0
>> configure:22006: result: yes
>> configure:22006: checking sys/resource.h presence
>> configure:22006: gcc -E conftest.c
>> configure:22006: $? = 0
>> configure:22006: result: yes
>> configure:22006: checking for sys/resource.h
>> configure:22006: result: yes
>> configure:22006: checking sys/time.h usability
>> configure:22006: gcc -c conftest.c >&5
>> configure:22006: $? = 0
>> configure:22006: result: yes
>> configure:22006: checking sys/time.h presence
>> configure:22006: gcc -E conftest.c
>> configure:22006: $? = 0
>> configure:22006: result: yes
>> configure:22006: checking for sys/time.h
>> configure:22006: result: yes
>> configure:22006: checking for unistd.h
>> configure:22006: result: yes
>> configure:22006: checking sys/ioctl.h usability
>> configure:22006: gcc -c conftest.c >&5
>> configure:22006: $? = 0
>> configure:22006: result: yes
>> configure:22006: checking sys/ioctl.h presence
>> configure:22006: gcc -E conftest.c
>> configure:22006: $? = 0
>> configure:22006: result: yes
>> configure:22006: checking for sys/ioctl.h
>> configure:22006: result: yes
>> configure:22006: checking for sys/stat.h
>> configure:22006: result: yes
>> configure:22019: checking sys/socket.h usability
>> configure:22019: gcc -c conftest.c >&5
>> configure:22019: $? = 0
>> configure:22019: result: yes
>> configure:22019: checking sys/socket.h presence
>> configure:22019: gcc -E conftest.c
>> configure:22019: $? = 0
>> configure:22019: result: yes
>> configure:22019: checking for sys/socket.h
>> configure:22019: result: yes
>> configure:22019: checking for sys/types.h
>> configure:22019: result: yes
>> configure:22032: checking stddef.h usability
>> configure:22032: gcc -c conftest.c >&5
>> configure:22032: $? = 0
>> configure:22032: result: yes
>> configure:22032: checking stddef.h presence
>> configure:22032: gcc -E conftest.c
>> configure:22032: $? = 0
>> configure:22032: result: yes
>> configure:22032: checking for stddef.h
>> configure:22032: result: yes
>> configure:22032: checking setjmp.h usability
>> configure:22032: gcc -c conftest.c >&5
>> configure:22032: $? = 0
>> configure:22032: result: yes
>> configure:22032: checking setjmp.h presence
>> configure:22032: gcc -E conftest.c
>> configure:22032: $? = 0
>> configure:22032: result: yes
>> configure:22032: checking for setjmp.h
>> configure:22032: result: yes
>> configure:22032: checking features.h usability
>> configure:22032: gcc -c conftest.c >&5
>> configure:22032: $? = 0
>> configure:22032: result: yes
>> configure:22032: checking features.h presence
>> configure:22032: gcc -E conftest.c
>> configure:22032: $? = 0
>> configure:22032: result: yes
>> configure:22032: checking for features.h
>> configure:22032: result: yes
>> configure:22044: checking dirent.h usability
>> configure:22044: gcc -c conftest.c >&5
>> configure:22044: $? = 0
>> configure:22044: result: yes
>> configure:22044: checking dirent.h presence
>> configure:22044: gcc -E conftest.c
>> configure:22044: $? = 0
>> configure:22044: result: yes
>> configure:22044: checking for dirent.h
>> configure:22044: result: yes
>> configure:22056: checking for stdint.h
>> configure:22056: result: yes
>> configure:22070: checking mach/mach_time.h usability
>> configure:22070: gcc -c conftest.c >&5
>> conftest.c:75:28: fatal error: mach/mach_time.h: No such file or
directory
>> compilation terminated.
>> configure:22070: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > #include <mach/mach_time.h>
>> configure:22070: result: no
>> configure:22070: checking mach/mach_time.h presence
>> configure:22070: gcc -E conftest.c
>> conftest.c:42:28: fatal error: mach/mach_time.h: No such file or
directory
>> compilation terminated.
>> configure:22070: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > /* end confdefs.h. */
>> > #include <mach/mach_time.h>
>> configure:22070: result: no
>> configure:22070: checking for mach/mach_time.h
>> configure:22070: result: no
>> configure:22173: checking io.h usability
>> configure:22173: gcc -c conftest.c >&5
>> conftest.c:75:16: fatal error: io.h: No such file or directory
>> compilation terminated.
>> configure:22173: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > #include <io.h>
>> configure:22173: result: no
>> configure:22173: checking io.h presence
>> configure:22173: gcc -E conftest.c
>> conftest.c:42:16: fatal error: io.h: No such file or directory
>> compilation terminated.
>> configure:22173: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > /* end confdefs.h. */
>> > #include <io.h>
>> configure:22173: result: no
>> configure:22173: checking for io.h
>> configure:22173: result: no
>> configure:22173: checking winsock2.h usability
>> configure:22173: gcc -c conftest.c >&5
>> conftest.c:75:22: fatal error: winsock2.h: No such file or directory
>> compilation terminated.
>> configure:22173: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > #include <winsock2.h>
>> configure:22173: result: no
>> configure:22173: checking winsock2.h presence
>> configure:22173: gcc -E conftest.c
>> conftest.c:42:22: fatal error: winsock2.h: No such file or directory
>> compilation terminated.
>> configure:22173: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > /* end confdefs.h. */
>> > #include <winsock2.h>
>> configure:22173: result: no
>> configure:22173: checking for winsock2.h
>> configure:22173: result: no
>> configure:22173: checking sys/timeb.h usability
>> configure:22173: gcc -c conftest.c >&5
>> configure:22173: $? = 0
>> configure:22173: result: yes
>> configure:22173: checking sys/timeb.h presence
>> configure:22173: gcc -E conftest.c
>> configure:22173: $? = 0
>> configure:22173: result: yes
>> configure:22173: checking for sys/timeb.h
>> configure:22173: result: yes
>> configure:22270: checking for _FILE_OFFSET_BITS value needed for large
files
>> configure:22303: gcc -c conftest.c >&5
>> configure:22303: $? = 0
>> configure:22343: result: no
>> configure:22522: gcc -c conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:55:1: error: unknown type name 'off64_t'
>> off64_t n = 0;
>> ^
>> configure:22522: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > /* end confdefs.h. */
>> > #include <sys/types.h>
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > off64_t n = 0;
>> > ;
>> > return 0;
>> > }
>> configure:22536: result: skipping test for lseek64(), fseeko64 ,
ftello64, ftruncate64() because off64_t is not defined
>> configure:22543: checking for fseeko
>> configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:22543: $? = 0
>> configure:22543: result: yes
>> configure:22543: checking for ftello
>> configure:22543: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:22543: $? = 0
>> configure:22543: result: yes
>> configure:22573: gcc -c conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:59:15: error: storage size of 'sb' isn't known
>> struct stat64 sb;
>> ^
>> configure:22573: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > /* end confdefs.h. */
>> >
>> > #include <sys/types.h>
>> > #include <sys/stat.h>
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > struct stat64 sb;
>> > ;
>> > return 0;
>> > }
>> configure:22587: result: skipping test for stat64() and fstat64()
>> configure:22595: checking for off_t
>> configure:22595: gcc -c conftest.c >&5
>> configure:22595: $? = 0
>> configure:22595: gcc -c conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:89:20: error: expected expression before ')' token
>> if (sizeof ((off_t)))
>> ^
>> configure:22595: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > if (sizeof ((off_t)))
>> > return 0;
>> > ;
>> > return 0;
>> > }
>> configure:22595: result: yes
>> configure:22606: checking for size_t
>> configure:22606: gcc -c conftest.c >&5
>> configure:22606: $? = 0
>> configure:22606: gcc -c conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:89:21: error: expected expression before ')' token
>> if (sizeof ((size_t)))
>> ^
>> configure:22606: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > if (sizeof ((size_t)))
>> > return 0;
>> > ;
>> > return 0;
>> > }
>> configure:22606: result: yes
>> configure:22617: checking for ssize_t
>> configure:22617: gcc -c conftest.c >&5
>> configure:22617: $? = 0
>> configure:22617: gcc -c conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:89:22: error: expected expression before ')' token
>> if (sizeof ((ssize_t)))
>> ^
>> configure:22617: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > if (sizeof ((ssize_t)))
>> > return 0;
>> > ;
>> > return 0;
>> > }
>> configure:22617: result: yes
>> configure:22628: checking for ptrdiff_t
>> configure:22628: gcc -c conftest.c >&5
>> configure:22628: $? = 0
>> configure:22628: gcc -c conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:89:24: error: expected expression before ')' token
>> if (sizeof ((ptrdiff_t)))
>> ^
>> configure:22628: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > if (sizeof ((ptrdiff_t)))
>> > return 0;
>> > ;
>> > return 0;
>> > }
>> configure:22628: result: yes
>> configure:22639: checking whether byte ordering is bigendian
>> configure:22654: gcc -c conftest.c >&5
>> conftest.c:46:9: error: unknown type name 'not'
>> not a universal capable compiler
>> ^
>> conftest.c:46:15: error: expected '=', ',', ';', 'asm' or
'__attribute__' before 'universal'
>> not a universal capable compiler
>> ^
>> conftest.c:46:15: error: unknown type name 'universal'
>> configure:22654: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > /* end confdefs.h. */
>> > #ifndef __APPLE_CC__
>> > not a universal capable compiler
>> > #endif
>> > typedef int dummy;
>> >
>> configure:22707: gcc -c conftest.c >&5
>> configure:22707: $? = 0
>> configure:22733: gcc -c conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:60:4: error: unknown type name 'not'
>> not big endian
>> ^
>> conftest.c:60:12: error: expected '=', ',', ';', 'asm' or
'__attribute__' before 'endian'
>> not big endian
>> ^
>> configure:22733: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > /* end confdefs.h. */
>> > #include <sys/types.h>
>> > #include <sys/param.h>
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > #if BYTE_ORDER != BIG_ENDIAN
>> > not big endian
>> > #endif
>> >
>> > ;
>> > return 0;
>> > }
>> configure:22893: result: no
>> configure:22915: checking size of char
>> configure:22920: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:22920: $? = 0
>> configure:22920: ./conftest
>> configure:22920: $? = 0
>> configure:22934: result: 1
>> configure:22948: checking size of short
>> configure:22953: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:22953: $? = 0
>> configure:22953: ./conftest
>> configure:22953: $? = 0
>> configure:22967: result: 2
>> configure:22981: checking size of int
>> configure:22986: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:22986: $? = 0
>> configure:22986: ./conftest
>> configure:22986: $? = 0
>> configure:23000: result: 4
>> configure:23014: checking size of unsigned
>> configure:23019: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23019: $? = 0
>> configure:23019: ./conftest
>> configure:23019: $? = 0
>> configure:23033: result: 4
>> configure:23047: checking size of long
>> configure:23052: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23052: $? = 0
>> configure:23052: ./conftest
>> configure:23052: $? = 0
>> configure:23066: result: 8
>> configure:23080: checking size of long long
>> configure:23085: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23085: $? = 0
>> configure:23085: ./conftest
>> configure:23085: $? = 0
>> configure:23099: result: 8
>> configure:23113: checking size of __int64
>> configure:23118: gcc -o conftest conftest.c -ldl -lm >&5
>> conftest.c: In function 'longval':
>> conftest.c:84:57: error: '__int64' undeclared (first use in this
function)
>> static long int longval () { return (long int) (sizeof (__int64)); }
>> ^
>> conftest.c:84:57: note: each undeclared identifier is reported only
once for each function it appears in
>> conftest.c: In function 'ulongval':
>> conftest.c:85:67: error: '__int64' undeclared (first use in this
function)
>> static unsigned long int ulongval () { return (long int) (sizeof
(__int64)); }
>> ^
>> conftest.c: In function 'main':
>> conftest.c:103:28: error: '__int64' undeclared (first use in this
function)
>> if (((long int) (sizeof (__int64))) < 0)
>> ^
>> configure:23118: $? = 1
>> configure: program exited with status 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > static long int longval () { return (long int) (sizeof (__int64)); }
>> > static unsigned long int ulongval () { return (long int) (sizeof
(__int64)); }
>> > #include <stdio.h>
>> > #include <stdlib.h>
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> >
>> > FILE *f = fopen ("conftest.val", "w");
>> > if (! f)
>> > return 1;
>> > if (((long int) (sizeof (__int64))) < 0)
>> > {
>> > long int i = longval ();
>> > if (i != ((long int) (sizeof (__int64))))
>> > return 1;
>> > fprintf (f, "%ld", i);
>> > }
>> > else
>> > {
>> > unsigned long int i = ulongval ();
>> > if (i != ((long int) (sizeof (__int64))))
>> > return 1;
>> > fprintf (f, "%lu", i);
>> > }
>> > /* Do not output a trailing newline, as this causes \r\n confusion
>> > on some platforms. */
>> > return ferror (f) || fclose (f) != 0;
>> >
>> > ;
>> > return 0;
>> > }
>> configure:23132: result: 0
>> configure:23146: checking size of float
>> configure:23151: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23151: $? = 0
>> configure:23151: ./conftest
>> configure:23151: $? = 0
>> configure:23165: result: 4
>> configure:23179: checking size of double
>> configure:23184: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23184: $? = 0
>> configure:23184: ./conftest
>> configure:23184: $? = 0
>> configure:23198: result: 8
>> configure:23212: checking size of long double
>> configure:23217: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23217: $? = 0
>> configure:23217: ./conftest
>> configure:23217: $? = 0
>> configure:23231: result: 16
>> configure:23344: checking size of int8_t
>> configure:23349: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23349: $? = 0
>> configure:23349: ./conftest
>> configure:23349: $? = 0
>> configure:23363: result: 1
>> configure:23377: checking size of uint8_t
>> configure:23382: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23382: $? = 0
>> configure:23382: ./conftest
>> configure:23382: $? = 0
>> configure:23396: result: 1
>> configure:23410: checking size of int_least8_t
>> configure:23415: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23415: $? = 0
>> configure:23415: ./conftest
>> configure:23415: $? = 0
>> configure:23429: result: 1
>> configure:23443: checking size of uint_least8_t
>> configure:23448: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23448: $? = 0
>> configure:23448: ./conftest
>> configure:23448: $? = 0
>> configure:23462: result: 1
>> configure:23476: checking size of int_fast8_t
>> configure:23481: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23481: $? = 0
>> configure:23481: ./conftest
>> configure:23481: $? = 0
>> configure:23495: result: 1
>> configure:23509: checking size of uint_fast8_t
>> configure:23514: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23514: $? = 0
>> configure:23514: ./conftest
>> configure:23514: $? = 0
>> configure:23528: result: 1
>> configure:23543: checking size of int16_t
>> configure:23548: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23548: $? = 0
>> configure:23548: ./conftest
>> configure:23548: $? = 0
>> configure:23562: result: 2
>> configure:23576: checking size of uint16_t
>> configure:23581: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23581: $? = 0
>> configure:23581: ./conftest
>> configure:23581: $? = 0
>> configure:23595: result: 2
>> configure:23609: checking size of int_least16_t
>> configure:23614: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23614: $? = 0
>> configure:23614: ./conftest
>> configure:23614: $? = 0
>> configure:23628: result: 2
>> configure:23642: checking size of uint_least16_t
>> configure:23647: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23647: $? = 0
>> configure:23647: ./conftest
>> configure:23647: $? = 0
>> configure:23661: result: 2
>> configure:23675: checking size of int_fast16_t
>> configure:23680: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23680: $? = 0
>> configure:23680: ./conftest
>> configure:23680: $? = 0
>> configure:23694: result: 8
>> configure:23708: checking size of uint_fast16_t
>> configure:23713: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23713: $? = 0
>> configure:23713: ./conftest
>> configure:23713: $? = 0
>> configure:23727: result: 8
>> configure:23742: checking size of int32_t
>> configure:23747: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23747: $? = 0
>> configure:23747: ./conftest
>> configure:23747: $? = 0
>> configure:23761: result: 4
>> configure:23775: checking size of uint32_t
>> configure:23780: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23780: $? = 0
>> configure:23780: ./conftest
>> configure:23780: $? = 0
>> configure:23794: result: 4
>> configure:23808: checking size of int_least32_t
>> configure:23813: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23813: $? = 0
>> configure:23813: ./conftest
>> configure:23813: $? = 0
>> configure:23827: result: 4
>> configure:23841: checking size of uint_least32_t
>> configure:23846: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23846: $? = 0
>> configure:23846: ./conftest
>> configure:23846: $? = 0
>> configure:23860: result: 4
>> configure:23874: checking size of int_fast32_t
>> configure:23879: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23879: $? = 0
>> configure:23879: ./conftest
>> configure:23879: $? = 0
>> configure:23893: result: 8
>> configure:23907: checking size of uint_fast32_t
>> configure:23912: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23912: $? = 0
>> configure:23912: ./conftest
>> configure:23912: $? = 0
>> configure:23926: result: 8
>> configure:23941: checking size of int64_t
>> configure:23946: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23946: $? = 0
>> configure:23946: ./conftest
>> configure:23946: $? = 0
>> configure:23960: result: 8
>> configure:23974: checking size of uint64_t
>> configure:23979: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:23979: $? = 0
>> configure:23979: ./conftest
>> configure:23979: $? = 0
>> configure:23993: result: 8
>> configure:24007: checking size of int_least64_t
>> configure:24012: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:24012: $? = 0
>> configure:24012: ./conftest
>> configure:24012: $? = 0
>> configure:24026: result: 8
>> configure:24040: checking size of uint_least64_t
>> configure:24045: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:24045: $? = 0
>> configure:24045: ./conftest
>> configure:24045: $? = 0
>> configure:24059: result: 8
>> configure:24073: checking size of int_fast64_t
>> configure:24078: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:24078: $? = 0
>> configure:24078: ./conftest
>> configure:24078: $? = 0
>> configure:24092: result: 8
>> configure:24106: checking size of uint_fast64_t
>> configure:24111: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:24111: $? = 0
>> configure:24111: ./conftest
>> configure:24111: $? = 0
>> configure:24125: result: 8
>> configure:24140: checking size of size_t
>> configure:24145: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:24145: $? = 0
>> configure:24145: ./conftest
>> configure:24145: $? = 0
>> configure:24159: result: 8
>> configure:24173: checking size of ssize_t
>> configure:24178: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:24178: $? = 0
>> configure:24178: ./conftest
>> configure:24178: $? = 0
>> configure:24192: result: 8
>> configure:24206: checking size of ptrdiff_t
>> configure:24211: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:24211: $? = 0
>> configure:24211: ./conftest
>> configure:24211: $? = 0
>> configure:24225: result: 8
>> configure:24243: checking size of off_t
>> configure:24248: gcc -o conftest conftest.c -ldl -lm >&5
>> configure:24248: $? = 0
>> configure:24248: ./conftest
>> configure:24248: $? = 0
>> configure:24262: result: 8
>> configure:24276: checking size of off64_t
>> configure:24281: gcc -o conftest conftest.c -ldl -lm >&5
>> conftest.c: In function 'longval':
>> conftest.c:119:57: error: 'off64_t' undeclared (first use in this
function)
>> static long int longval () { return (long int) (sizeof (off64_t)); }
>> ^
>> conftest.c:119:57: note: each undeclared identifier is reported only
once for each function it appears in
>> conftest.c: In function 'ulongval':
>> conftest.c:120:67: error: 'off64_t' undeclared (first use in this
function)
>> static unsigned long int ulongval () { return (long int) (sizeof
(off64_t)); }
>> ^
>> conftest.c: In function 'main':
>> conftest.c:138:28: error: 'off64_t' undeclared (first use in this
function)
>> if (((long int) (sizeof (off64_t))) < 0)
>> ^
>> configure:24281: $? = 1
>> configure: program exited with status 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > /* end confdefs.h. */
>> > #include <stdio.h>
>> > #ifdef HAVE_SYS_TYPES_H
>> > # include <sys/types.h>
>> > #endif
>> > #ifdef HAVE_SYS_STAT_H
>> > # include <sys/stat.h>
>> > #endif
>> > #ifdef STDC_HEADERS
>> > # include <stdlib.h>
>> > # include <stddef.h>
>> > #else
>> > # ifdef HAVE_STDLIB_H
>> > # include <stdlib.h>
>> > # endif
>> > #endif
>> > #ifdef HAVE_STRING_H
>> > # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> > # include <memory.h>
>> > # endif
>> > # include <string.h>
>> > #endif
>> > #ifdef HAVE_STRINGS_H
>> > # include <strings.h>
>> > #endif
>> > #ifdef HAVE_INTTYPES_H
>> > # include <inttypes.h>
>> > #endif
>> > #ifdef HAVE_STDINT_H
>> > # include <stdint.h>
>> > #endif
>> > #ifdef HAVE_UNISTD_H
>> > # include <unistd.h>
>> > #endif
>> > static long int longval () { return (long int) (sizeof (off64_t)); }
>> > static unsigned long int ulongval () { return (long int) (sizeof
(off64_t)); }
>> > #include <stdio.h>
>> > #include <stdlib.h>
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> >
>> > FILE *f = fopen ("conftest.val", "w");
>> > if (! f)
>> > return 1;
>> > if (((long int) (sizeof (off64_t))) < 0)
>> > {
>> > long int i = longval ();
>> > if (i != ((long int) (sizeof (off64_t))))
>> > return 1;
>> > fprintf (f, "%ld", i);
>> > }
>> > else
>> > {
>> > unsigned long int i = ulongval ();
>> > if (i != ((long int) (sizeof (off64_t))))
>> > return 1;
>> > fprintf (f, "%lu", i);
>> > }
>> > /* Do not output a trailing newline, as this causes \r\n confusion
>> > on some platforms. */
>> > return ferror (f) || fclose (f) != 0;
>> >
>> > ;
>> > return 0;
>> > }
>> configure:24295: result: 0
>> configure:24396: checking if dev_t is scalar
>> configure:24421: gcc -c conftest.c >&5
>> configure:24421: $? = 0
>> configure:24425: result: yes
>> configure:24541: checking for dmalloc library
>> configure:24543: result: suppressed
>> configure:24791: checking zlib.h usability
>> configure:24791: gcc -c -I/opt/zlib/include conftest.c >&5
>> configure:24791: $? = 0
>> configure:24791: result: yes
>> configure:24791: checking zlib.h presence
>> configure:24791: gcc -E -I/opt/zlib/include conftest.c
>> configure:24791: $? = 0
>> configure:24791: result: yes
>> configure:24791: checking for zlib.h
>> configure:24791: result: yes
>> configure:24810: checking for compress2 in -lz
>> configure:24843: gcc -o conftest -I/opt/zlib/include
-L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
>> configure:24843: $? = 0
>> configure:24852: result: yes
>> configure:24872: checking for compress2
>> configure:24872: gcc -o conftest -I/opt/zlib/include
-L/opt/zlib/lib conftest.c -lz -ldl -lm >&5
>> configure:24872: $? = 0
>> configure:24872: result: yes
>> configure:25023: checking szlib.h usability
>> configure:25023: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:25023: $? = 0
>> configure:25023: result: yes
>> configure:25023: checking szlib.h presence
>> configure:25023: gcc -E -I/opt/zlib/include -I/opt/szip/include
conftest.c
>> configure:25023: $? = 0
>> configure:25023: result: yes
>> configure:25023: checking for szlib.h
>> configure:25023: result: yes
>> configure:25042: checking for SZ_BufftoBuffCompress in -lsz
>> configure:25075: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:25075: $? = 0
>> configure:25084: result: yes
>> configure:25107: checking for szlib encoder
>> configure:25145: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> conftest.c: In function 'main':
>> conftest.c:100:17: warning: implicit declaration of function 'exit'
[-Wimplicit-function-declaration]
>> exit(0);
>> ^
>> conftest.c:100:17: warning: incompatible implicit declaration of
built-in function 'exit'
>> conftest.c:100:17: note: include '<stdlib.h>' or provide a declaration
of 'exit'
>> conftest.c:102:17: warning: incompatible implicit declaration of
built-in function 'exit'
>> exit(1);
>> ^
>> conftest.c:102:17: note: include '<stdlib.h>' or provide a declaration
of 'exit'
>> configure:25145: $? = 0
>> configure:25145: ./conftest
>> configure:25145: $? = 0
>> configure:25163: result: yes
>> configure:25286: checking for thread safe support
>> configure:25313: result: no
>> configure:25611: checking whether CLOCK_MONOTONIC is declared
>> configure:25611: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:25611: $? = 0
>> configure:25611: result: yes
>> configure:25626: checking for tm_gmtoff in struct tm
>> configure:25649: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:25649: $? = 0
>> configure:25653: result: yes
>> configure:25662: checking for global timezone variable
>> configure:25692: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:25692: $? = 0
>> configure:25696: result: yes
>> configure:25711: checking for st_blocks in struct stat
>> configure:25733: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:25733: $? = 0
>> configure:25737: result: yes
>> configure:25751: checking for _getvideoconfig
>> configure:25751: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> /tmp/ccsNnkS7.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to `_getvideoconfig'
>> collect2: error: ld returned 1 exit status
>> configure:25751: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > /* end confdefs.h. */
>> > /* Define _getvideoconfig to an innocuous variant, in case <limits.h>
declares _getvideoconfig.
>> > For example, HP-UX 11i <limits.h> declares gettimeofday. */
>> > #define _getvideoconfig innocuous__getvideoconfig
>> >
>> > /* System header to define __stub macros and hopefully few prototypes,
>> > which can conflict with char _getvideoconfig (); below.
>> > Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
>> > <limits.h> exists even on freestanding compilers. */
>> >
>> > #ifdef __STDC__
>> > # include <limits.h>
>> > #else
>> > # include <assert.h>
>> > #endif
>> >
>> > #undef _getvideoconfig
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char _getvideoconfig ();
>> > /* The GNU C library defines this for functions which it implements
>> > to always fail with ENOSYS. Some functions are actually named
>> > something starting with __ and the normal name is an alias. */
>> > #if defined __stub__getvideoconfig || defined __stub____getvideoconfig
>> > choke me
>> > #endif
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return _getvideoconfig ();
>> > ;
>> > return 0;
>> > }
>> configure:25751: result: no
>> configure:25751: checking for gettextinfo
>> configure:25751: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> /tmp/cc4i6cWa.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to `gettextinfo'
>> collect2: error: ld returned 1 exit status
>> configure:25751: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > /* end confdefs.h. */
>> > /* Define gettextinfo to an innocuous variant, in case <limits.h>
declares gettextinfo.
>> > For example, HP-UX 11i <limits.h> declares gettimeofday. */
>> > #define gettextinfo innocuous_gettextinfo
>> >
>> > /* System header to define __stub macros and hopefully few prototypes,
>> > which can conflict with char gettextinfo (); below.
>> > Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
>> > <limits.h> exists even on freestanding compilers. */
>> >
>> > #ifdef __STDC__
>> > # include <limits.h>
>> > #else
>> > # include <assert.h>
>> > #endif
>> >
>> > #undef gettextinfo
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char gettextinfo ();
>> > /* The GNU C library defines this for functions which it implements
>> > to always fail with ENOSYS. Some functions are actually named
>> > something starting with __ and the normal name is an alias. */
>> > #if defined __stub_gettextinfo || defined __stub___gettextinfo
>> > choke me
>> > #endif
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return gettextinfo ();
>> > ;
>> > return 0;
>> > }
>> configure:25751: result: no
>> configure:25766: checking for GetConsoleScreenBufferInfo
>> configure:25766: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> /tmp/ccSBzVLg.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to
`GetConsoleScreenBufferInfo'
>> collect2: error: ld returned 1 exit status
>> configure:25766: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > /* end confdefs.h. */
>> > /* Define GetConsoleScreenBufferInfo to an innocuous variant, in case
<limits.h> declares GetConsoleScreenBufferInfo.
>> > For example, HP-UX 11i <limits.h> declares gettimeofday. */
>> > #define GetConsoleScreenBufferInfo
innocuous_GetConsoleScreenBufferInfo
>> >
>> > /* System header to define __stub macros and hopefully few prototypes,
>> > which can conflict with char GetConsoleScreenBufferInfo (); below.
>> > Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
>> > <limits.h> exists even on freestanding compilers. */
>> >
>> > #ifdef __STDC__
>> > # include <limits.h>
>> > #else
>> > # include <assert.h>
>> > #endif
>> >
>> > #undef GetConsoleScreenBufferInfo
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char GetConsoleScreenBufferInfo ();
>> > /* The GNU C library defines this for functions which it implements
>> > to always fail with ENOSYS. Some functions are actually named
>> > something starting with __ and the normal name is an alias. */
>> > #if defined __stub_GetConsoleScreenBufferInfo || defined
__stub___GetConsoleScreenBufferInfo
>> > choke me
>> > #endif
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return GetConsoleScreenBufferInfo ();
>> > ;
>> > return 0;
>> > }
>> configure:25766: result: no
>> configure:25780: checking for _scrsize
>> configure:25780: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> /tmp/cciTXu0i.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to `_scrsize'
>> collect2: error: ld returned 1 exit status
>> configure:25780: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > /* end confdefs.h. */
>> > /* Define _scrsize to an innocuous variant, in case <limits.h>
declares _scrsize.
>> > For example, HP-UX 11i <limits.h> declares gettimeofday. */
>> > #define _scrsize innocuous__scrsize
>> >
>> > /* System header to define __stub macros and hopefully few prototypes,
>> > which can conflict with char _scrsize (); below.
>> > Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
>> > <limits.h> exists even on freestanding compilers. */
>> >
>> > #ifdef __STDC__
>> > # include <limits.h>
>> > #else
>> > # include <assert.h>
>> > #endif
>> >
>> > #undef _scrsize
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char _scrsize ();
>> > /* The GNU C library defines this for functions which it implements
>> > to always fail with ENOSYS. Some functions are actually named
>> > something starting with __ and the normal name is an alias. */
>> > #if defined __stub__scrsize || defined __stub____scrsize
>> > choke me
>> > #endif
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return _scrsize ();
>> > ;
>> > return 0;
>> > }
>> configure:25780: result: no
>> configure:25780: checking for ioctl
>> configure:25780: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:25780: $? = 0
>> configure:25780: result: yes
>> configure:25790: checking for struct videoconfig
>> configure:25811: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:110:20: error: storage size of 'w' isn't known
>> struct videoconfig w; w.numtextcols=0;
>> ^
>> configure:25811: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > #define HAVE_IOCTL 1
>> > /* end confdefs.h. */
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > struct videoconfig w; w.numtextcols=0;
>> > ;
>> > return 0;
>> > }
>> configure:25818: result: no
>> configure:25823: checking for struct text_info
>> configure:25844: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:110:18: error: storage size of 'w' isn't known
>> struct text_info w; w.screenwidth=0;
>> ^
>> configure:25844: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > #define HAVE_IOCTL 1
>> > /* end confdefs.h. */
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > struct text_info w; w.screenwidth=0;
>> > ;
>> > return 0;
>> > }
>> configure:25851: result: no
>> configure:25856: checking for TIOCGWINSZ
>> configure:25877: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:25877: $? = 0
>> configure:25881: result: yes
>> configure:25889: checking for TIOCGETD
>> configure:25910: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:25910: $? = 0
>> configure:25914: result: yes
>> configure:25928: checking for library containing clock_gettime
>> configure:25967: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:25967: $? = 0
>> configure:25984: result: none required
>> configure:25995: checking for alarm
>> configure:25995: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:25995: $? = 0
>> configure:25995: result: yes
>> configure:25995: checking for clock_gettime
>> configure:25995: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:25995: $? = 0
>> configure:25995: result: yes
>> configure:25995: checking for difftime
>> configure:25995: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:25995: $? = 0
>> configure:25995: result: yes
>> configure:25995: checking for fork
>> configure:25995: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> conftest.c:126:6: warning: conflicting types for built-in function
'fork'
>> char fork ();
>> ^
>> configure:25995: $? = 0
>> configure:25995: result: yes
>> configure:25995: checking for frexpf
>> configure:25995: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> conftest.c:127:6: warning: conflicting types for built-in function
'frexpf'
>> char frexpf ();
>> ^
>> configure:25995: $? = 0
>> configure:25995: result: yes
>> configure:25995: checking for frexpl
>> configure:25995: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> conftest.c:128:6: warning: conflicting types for built-in function
'frexpl'
>> char frexpl ();
>> ^
>> configure:25995: $? = 0
>> configure:25995: result: yes
>> configure:26007: checking for gethostname
>> configure:26007: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26007: $? = 0
>> configure:26007: result: yes
>> configure:26007: checking for getpwuid
>> configure:26007: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26007: $? = 0
>> configure:26007: result: yes
>> configure:26007: checking for getrusage
>> configure:26007: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26007: $? = 0
>> configure:26007: result: yes
>> configure:26007: checking for gettimeofday
>> configure:26007: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26007: $? = 0
>> configure:26007: result: yes
>> configure:26019: checking for lstat
>> configure:26019: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26019: $? = 0
>> configure:26019: result: yes
>> configure:26019: checking for rand_r
>> configure:26019: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26019: $? = 0
>> configure:26019: result: yes
>> configure:26019: checking for random
>> configure:26019: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26019: $? = 0
>> configure:26019: result: yes
>> configure:26019: checking for setsysinfo
>> configure:26019: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> /tmp/ccdLPp70.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to `setsysinfo'
>> collect2: error: ld returned 1 exit status
>> configure:26019: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > #define HAVE_IOCTL 1
>> > #define HAVE_TIOCGWINSZ 1
>> > #define HAVE_TIOCGETD 1
>> > #define HAVE_ALARM 1
>> > #define HAVE_CLOCK_GETTIME 1
>> > #define HAVE_DIFFTIME 1
>> > #define HAVE_FORK 1
>> > #define HAVE_FREXPF 1
>> > #define HAVE_FREXPL 1
>> > #define HAVE_GETHOSTNAME 1
>> > #define HAVE_GETPWUID 1
>> > #define HAVE_GETRUSAGE 1
>> > #define HAVE_GETTIMEOFDAY 1
>> > #define HAVE_LSTAT 1
>> > #define HAVE_RAND_R 1
>> > #define HAVE_RANDOM 1
>> > /* end confdefs.h. */
>> > /* Define setsysinfo to an innocuous variant, in case <limits.h>
declares setsysinfo.
>> > For example, HP-UX 11i <limits.h> declares gettimeofday. */
>> > #define setsysinfo innocuous_setsysinfo
>> >
>> > /* System header to define __stub macros and hopefully few prototypes,
>> > which can conflict with char setsysinfo (); below.
>> > Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
>> > <limits.h> exists even on freestanding compilers. */
>> >
>> > #ifdef __STDC__
>> > # include <limits.h>
>> > #else
>> > # include <assert.h>
>> > #endif
>> >
>> > #undef setsysinfo
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char setsysinfo ();
>> > /* The GNU C library defines this for functions which it implements
>> > to always fail with ENOSYS. Some functions are actually named
>> > something starting with __ and the normal name is an alias. */
>> > #if defined __stub_setsysinfo || defined __stub___setsysinfo
>> > choke me
>> > #endif
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return setsysinfo ();
>> > ;
>> > return 0;
>> > }
>> configure:26019: result: no
>> configure:26031: checking for signal
>> configure:26031: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26031: $? = 0
>> configure:26031: result: yes
>> configure:26031: checking for longjmp
>> configure:26031: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26031: $? = 0
>> configure:26031: result: yes
>> configure:26031: checking for setjmp
>> configure:26031: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26031: $? = 0
>> configure:26031: result: yes
>> configure:26031: checking for siglongjmp
>> configure:26031: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26031: $? = 0
>> configure:26031: result: yes
>> configure:26031: checking for sigsetjmp
>> configure:26031: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> /tmp/ccPMRaFg.o: In function `main':
>> conftest.c:(.text+0xa): undefined reference to `sigsetjmp'
>> collect2: error: ld returned 1 exit status
>> configure:26031: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > #define HAVE_IOCTL 1
>> > #define HAVE_TIOCGWINSZ 1
>> > #define HAVE_TIOCGETD 1
>> > #define HAVE_ALARM 1
>> > #define HAVE_CLOCK_GETTIME 1
>> > #define HAVE_DIFFTIME 1
>> > #define HAVE_FORK 1
>> > #define HAVE_FREXPF 1
>> > #define HAVE_FREXPL 1
>> > #define HAVE_GETHOSTNAME 1
>> > #define HAVE_GETPWUID 1
>> > #define HAVE_GETRUSAGE 1
>> > #define HAVE_GETTIMEOFDAY 1
>> > #define HAVE_LSTAT 1
>> > #define HAVE_RAND_R 1
>> > #define HAVE_RANDOM 1
>> > #define HAVE_SIGNAL 1
>> > #define HAVE_LONGJMP 1
>> > #define HAVE_SETJMP 1
>> > #define HAVE_SIGLONGJMP 1
>> > /* end confdefs.h. */
>> > /* Define sigsetjmp to an innocuous variant, in case <limits.h>
declares sigsetjmp.
>> > For example, HP-UX 11i <limits.h> declares gettimeofday. */
>> > #define sigsetjmp innocuous_sigsetjmp
>> >
>> > /* System header to define __stub macros and hopefully few prototypes,
>> > which can conflict with char sigsetjmp (); below.
>> > Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
>> > <limits.h> exists even on freestanding compilers. */
>> >
>> > #ifdef __STDC__
>> > # include <limits.h>
>> > #else
>> > # include <assert.h>
>> > #endif
>> >
>> > #undef sigsetjmp
>> >
>> > /* Override any GCC internal prototype to avoid an error.
>> > Use char because int might match the return type of a GCC
>> > builtin and then its argument prototype would still apply. */
>> > #ifdef __cplusplus
>> > extern "C"
>> > #endif
>> > char sigsetjmp ();
>> > /* The GNU C library defines this for functions which it implements
>> > to always fail with ENOSYS. Some functions are actually named
>> > something starting with __ and the normal name is an alias. */
>> > #if defined __stub_sigsetjmp || defined __stub___sigsetjmp
>> > choke me
>> > #endif
>> >
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > return sigsetjmp ();
>> > ;
>> > return 0;
>> > }
>> configure:26031: result: no
>> configure:26031: checking for sigprocmask
>> configure:26031: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26031: $? = 0
>> configure:26031: result: yes
>> configure:26043: checking for snprintf
>> configure:26043: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> conftest.c:141:6: warning: conflicting types for built-in function
'snprintf'
>> char snprintf ();
>> ^
>> configure:26043: $? = 0
>> configure:26043: result: yes
>> configure:26043: checking for srandom
>> configure:26043: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26043: $? = 0
>> configure:26043: result: yes
>> configure:26043: checking for strdup
>> configure:26043: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> conftest.c:143:6: warning: conflicting types for built-in function
'strdup'
>> char strdup ();
>> ^
>> configure:26043: $? = 0
>> configure:26043: result: yes
>> configure:26043: checking for symlink
>> configure:26043: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26043: $? = 0
>> configure:26043: result: yes
>> configure:26043: checking for system
>> configure:26043: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26043: $? = 0
>> configure:26043: result: yes
>> configure:26055: checking for tmpfile
>> configure:26055: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26055: $? = 0
>> configure:26055: result: yes
>> configure:26055: checking for asprintf
>> configure:26055: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26055: $? = 0
>> configure:26055: result: yes
>> configure:26055: checking for vasprintf
>> configure:26055: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26055: $? = 0
>> configure:26055: result: yes
>> configure:26055: checking for vsnprintf
>> configure:26055: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> conftest.c:149:6: warning: conflicting types for built-in function
'vsnprintf'
>> char vsnprintf ();
>> ^
>> configure:26055: $? = 0
>> configure:26055: result: yes
>> configure:26055: checking for waitpid
>> configure:26055: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26055: $? = 0
>> configure:26055: result: yes
>> configure:26068: checking for an ANSI C-conforming const
>> configure:26142: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:26142: $? = 0
>> configure:26149: result: yes
>> configure:26157: checking for inline
>> configure:26173: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:26173: $? = 0
>> configure:26181: result: inline
>> configure:26200: checking for __attribute__ extension
>> configure:26221: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:26221: $? = 0
>> configure:26225: result: yes
>> configure:26233: checking for __func__ extension
>> configure:26254: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:26254: $? = 0
>> configure:26258: result: yes
>> configure:26265: checking for __FUNCTION__ extension
>> configure:26286: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:26286: $? = 0
>> configure:26290: result: yes
>> configure:26297: checking for C99 designated initialization support
>> configure:26326: gcc -c -I/opt/zlib/include
-I/opt/szip/include conftest.c >&5
>> configure:26326: $? = 0
>> configure:26330: result: yes
>> configure:26343: checking how to print long long
>> configure:26370: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26370: $? = 0
>> configure:26370: ./conftest
>> configure:26370: $? = 0
>> configure:26381: result: %ld and %lu
>> configure:26393: checking Threads support system scope
>> configure:26423: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> configure:26423: $? = 0
>> configure:26423: ./conftest
>> configure:26423: $? = 0
>> configure:26439: result: yes
>> configure:26450: checking for debug flags
>> configure:26483: result: none
>> configure:26503: checking whether function stack tracking is enabled
>> configure:26522: result: no
>> configure:26530: checking whether metadata trace file code is enabled
>> configure:26549: result: no
>> configure:26559: checking for API tracing
>> configure:26584: result: no
>> configure:26596: checking for instrumented library
>> configure:26623: result: no
>> configure:26634: checking whether to clear file buffers
>> configure:26645: result: yes
>> configure:26665: checking whether a memory checking tool will be used
>> configure:26684: result: no
>> configure:26803: checking for parallel support files
>> configure:26815: result: provided by compiler
>> configure:26820: checking whether a simple MPI-IO C program can be
linked
>> configure:26842: gcc -o conftest -I/opt/zlib/include
-I/opt/szip/include -L/opt/zlib/lib -L/opt/szip/lib conftest.c -lsz -lz
-ldl -lm >&5
>> conftest.c:135:17: fatal error: mpi.h: No such file or directory
>> compilation terminated.
>> configure:26842: $? = 1
>> configure: failed program was:
>> > /* confdefs.h */
>> > #define PACKAGE_NAME "HDF5"
>> > #define PACKAGE_TARNAME "hdf5"
>> > #define PACKAGE_VERSION "1.8.15"
>> > #define PACKAGE_STRING "HDF5 1.8.15"
>> > #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> > #define PACKAGE_URL ""
>> > #define PACKAGE "hdf5"
>> > #define VERSION "1.8.15"
>> > #define FC_FUNC(name,NAME) name ## _
>> > #define FC_FUNC_(name,NAME) name ## _
>> > #define INCLUDE_HL 1
>> > #define STDC_HEADERS 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_STDLIB_H 1
>> > #define HAVE_STRING_H 1
>> > #define HAVE_MEMORY_H 1
>> > #define HAVE_STRINGS_H 1
>> > #define HAVE_INTTYPES_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_DLFCN_H 1
>> > #define LT_OBJDIR ".libs/"
>> > #define HAVE_LIBM 1
>> > #define HAVE_LIBDL 1
>> > #define STDC_HEADERS 1
>> > #define TIME_WITH_SYS_TIME 1
>> > #define HAVE_SYS_RESOURCE_H 1
>> > #define HAVE_SYS_TIME_H 1
>> > #define HAVE_UNISTD_H 1
>> > #define HAVE_SYS_IOCTL_H 1
>> > #define HAVE_SYS_STAT_H 1
>> > #define HAVE_SYS_SOCKET_H 1
>> > #define HAVE_SYS_TYPES_H 1
>> > #define HAVE_STDDEF_H 1
>> > #define HAVE_SETJMP_H 1
>> > #define HAVE_FEATURES_H 1
>> > #define HAVE_DIRENT_H 1
>> > #define HAVE_STDINT_H 1
>> > #define HAVE_SYS_TIMEB_H 1
>> > #define HAVE_FSEEKO 1
>> > #define HAVE_FTELLO 1
>> > #define SIZEOF_CHAR 1
>> > #define SIZEOF_SHORT 2
>> > #define SIZEOF_INT 4
>> > #define SIZEOF_UNSIGNED 4
>> > #define SIZEOF_LONG 8
>> > #define SIZEOF_LONG_LONG 8
>> > #define SIZEOF___INT64 0
>> > #define SIZEOF_FLOAT 4
>> > #define SIZEOF_DOUBLE 8
>> > #define SIZEOF_LONG_DOUBLE 16
>> > #include <sys/types.h>
>> > #include <stdint.h>
>> > #define SIZEOF_INT8_T 1
>> > #define SIZEOF_UINT8_T 1
>> > #define SIZEOF_INT_LEAST8_T 1
>> > #define SIZEOF_UINT_LEAST8_T 1
>> > #define SIZEOF_INT_FAST8_T 1
>> > #define SIZEOF_UINT_FAST8_T 1
>> > #define SIZEOF_INT16_T 2
>> > #define SIZEOF_UINT16_T 2
>> > #define SIZEOF_INT_LEAST16_T 2
>> > #define SIZEOF_UINT_LEAST16_T 2
>> > #define SIZEOF_INT_FAST16_T 8
>> > #define SIZEOF_UINT_FAST16_T 8
>> > #define SIZEOF_INT32_T 4
>> > #define SIZEOF_UINT32_T 4
>> > #define SIZEOF_INT_LEAST32_T 4
>> > #define SIZEOF_UINT_LEAST32_T 4
>> > #define SIZEOF_INT_FAST32_T 8
>> > #define SIZEOF_UINT_FAST32_T 8
>> > #define SIZEOF_INT64_T 8
>> > #define SIZEOF_UINT64_T 8
>> > #define SIZEOF_INT_LEAST64_T 8
>> > #define SIZEOF_UINT_LEAST64_T 8
>> > #define SIZEOF_INT_FAST64_T 8
>> > #define SIZEOF_UINT_FAST64_T 8
>> > #define SIZEOF_SIZE_T 8
>> > #define SIZEOF_SSIZE_T 8
>> > #define SIZEOF_PTRDIFF_T 8
>> > #include <sys/types.h> /*for off_t definition*/
>> > #define SIZEOF_OFF_T 8
>> > #define SIZEOF_OFF64_T 0
>> > #define DEV_T_IS_SCALAR 1
>> > #define HAVE_ZLIB_H 1
>> > #define HAVE_LIBZ 1
>> > #define HAVE_FILTER_DEFLATE 1
>> > #define HAVE_SZLIB_H 1
>> > #define HAVE_LIBSZ 1
>> > #define HAVE_FILTER_SZIP 1
>> > #define HAVE_TM_GMTOFF 1
>> > #define HAVE_TIMEZONE 1
>> > #define HAVE_STAT_ST_BLOCKS 1
>> > #define HAVE_IOCTL 1
>> > #define HAVE_TIOCGWINSZ 1
>> > #define HAVE_TIOCGETD 1
>> > #define HAVE_ALARM 1
>> > #define HAVE_CLOCK_GETTIME 1
>> > #define HAVE_DIFFTIME 1
>> > #define HAVE_FORK 1
>> > #define HAVE_FREXPF 1
>> > #define HAVE_FREXPL 1
>> > #define HAVE_GETHOSTNAME 1
>> > #define HAVE_GETPWUID 1
>> > #define HAVE_GETRUSAGE 1
>> > #define HAVE_GETTIMEOFDAY 1
>> > #define HAVE_LSTAT 1
>> > #define HAVE_RAND_R 1
>> > #define HAVE_RANDOM 1
>> > #define HAVE_SIGNAL 1
>> > #define HAVE_LONGJMP 1
>> > #define HAVE_SETJMP 1
>> > #define HAVE_SIGLONGJMP 1
>> > #define HAVE_SIGPROCMASK 1
>> > #define HAVE_SNPRINTF 1
>> > #define HAVE_SRANDOM 1
>> > #define HAVE_STRDUP 1
>> > #define HAVE_SYMLINK 1
>> > #define HAVE_SYSTEM 1
>> > #define HAVE_TMPFILE 1
>> > #define HAVE_ASPRINTF 1
>> > #define HAVE_VASPRINTF 1
>> > #define HAVE_VSNPRINTF 1
>> > #define HAVE_WAITPID 1
>> > #define HAVE_ATTRIBUTE 1
>> > #define HAVE_C99_FUNC 1
>> > #define HAVE_FUNCTION 1
>> > #define HAVE_C99_DESIGNATED_INITIALIZER 1
>> > #define PRINTF_LL_WIDTH "l"
>> > #define SYSTEM_SCOPE_THREADS 1
>> > #define CLEAR_MEMORY 1
>> > /* end confdefs.h. */
>> > #include <mpi.h>
>> > #ifdef FC_DUMMY_MAIN
>> > #ifndef FC_DUMMY_MAIN_EQ_F77
>> > # ifdef __cplusplus
>> > extern "C"
>> > # endif
>> > int FC_DUMMY_MAIN() { return 1; }
>> > #endif
>> > #endif
>> > int
>> > main ()
>> > {
>> > MPI_Init(0, (void *)0);
>> > MPI_File_open(0, (void *)0, 0, 0, (void *)0);
>> > ;
>> > return 0;
>> > }
>> configure:26846: result: no
>> configure:26848: error: unable to link a simple MPI-IO C program
>>
>> ## ---------------- ##
>> ## Cache variables. ##
>> ## ---------------- ##
>>
>> ac_cv_build=x86_64-pc-none
>> ac_cv_c_bigendian=no
>> ac_cv_c_compiler_gnu=yes
>> ac_cv_c_const=yes
>> ac_cv_c_inline=inline
>> ac_cv_cxx_compiler_gnu=yes
>> ac_cv_env_CCC_set=
>> ac_cv_env_CCC_value=
>> ac_cv_env_CC_set=
>> ac_cv_env_CC_value=
>> ac_cv_env_CFLAGS_set=
>> ac_cv_env_CFLAGS_value=
>> ac_cv_env_CPPFLAGS_set=
>> ac_cv_env_CPPFLAGS_value=
>> ac_cv_env_CPP_set=
>> ac_cv_env_CPP_value=
>> ac_cv_env_CXXCPP_set=
>> ac_cv_env_CXXCPP_value=
>> ac_cv_env_CXXFLAGS_set=
>> ac_cv_env_CXXFLAGS_value=
>> ac_cv_env_CXX_set=
>> ac_cv_env_CXX_value=
>> ac_cv_env_FCFLAGS_set=
>> ac_cv_env_FCFLAGS_value=
>> ac_cv_env_FC_set=
>> ac_cv_env_FC_value=
>> ac_cv_env_LDFLAGS_set=
>> ac_cv_env_LDFLAGS_value=
>> ac_cv_env_LIBS_set=
>> ac_cv_env_LIBS_value=
>> ac_cv_env_build_alias_set=set
>> ac_cv_env_build_alias_value=x86_64
>> ac_cv_env_host_alias_set=
>> ac_cv_env_host_alias_value=
>> ac_cv_env_target_alias_set=
>> ac_cv_env_target_alias_value=
>> ac_cv_fc_compiler_gnu=yes
>> ac_cv_fc_dummy_main=none
>> ac_cv_fc_libs=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
-lgfortran -lm -lquadmath'
>> ac_cv_fc_mangling='lower case, underscore, no extra underscore'
>> ac_cv_fc_srcext_f90=none
>> ac_cv_fortran_dummy_main=none
>> ac_cv_func_GetConsoleScreenBufferInfo=no
>> ac_cv_func__getvideoconfig=no
>> ac_cv_func__scrsize=no
>> ac_cv_func_alarm=yes
>> ac_cv_func_asprintf=yes
>> ac_cv_func_clock_gettime=yes
>> ac_cv_func_compress2=yes
>> ac_cv_func_difftime=yes
>> ac_cv_func_dlopen=no
>> ac_cv_func_fork=yes
>> ac_cv_func_frexpf=yes
>> ac_cv_func_frexpl=yes
>> ac_cv_func_fseeko=yes
>> ac_cv_func_ftello=yes
>> ac_cv_func_gethostname=yes
>> ac_cv_func_getpwuid=yes
>> ac_cv_func_getrusage=yes
>> ac_cv_func_gettextinfo=no
>> ac_cv_func_gettimeofday=yes
>> ac_cv_func_ioctl=yes
>> ac_cv_func_longjmp=yes
>> ac_cv_func_lstat=yes
>> ac_cv_func_rand_r=yes
>> ac_cv_func_random=yes
>> ac_cv_func_setjmp=yes
>> ac_cv_func_setsysinfo=no
>> ac_cv_func_shl_load=no
>> ac_cv_func_siglongjmp=yes
>> ac_cv_func_signal=yes
>> ac_cv_func_sigprocmask=yes
>> ac_cv_func_sigsetjmp=no
>> ac_cv_func_snprintf=yes
>> ac_cv_func_srandom=yes
>> ac_cv_func_strdup=yes
>> ac_cv_func_symlink=yes
>> ac_cv_func_system=yes
>> ac_cv_func_tmpfile=yes
>> ac_cv_func_vasprintf=yes
>> ac_cv_func_vsnprintf=yes
>> ac_cv_func_waitpid=yes
>> ac_cv_have_decl_CLOCK_MONOTONIC=yes
>> ac_cv_header_dirent_h=yes
>> ac_cv_header_dlfcn_h=yes
>> ac_cv_header_features_h=yes
>> ac_cv_header_inttypes_h=yes
>> ac_cv_header_io_h=no
>> ac_cv_header_mach_mach_time_h=no
>> ac_cv_header_memory_h=yes
>> ac_cv_header_setjmp_h=yes
>> ac_cv_header_stdc=yes
>> ac_cv_header_stddef_h=yes
>> ac_cv_header_stdint_h=yes
>> ac_cv_header_stdlib_h=yes
>> ac_cv_header_string_h=yes
>> ac_cv_header_strings_h=yes
>> ac_cv_header_sys_ioctl_h=yes
>> ac_cv_header_sys_resource_h=yes
>> ac_cv_header_sys_socket_h=yes
>> ac_cv_header_sys_stat_h=yes
>> ac_cv_header_sys_time_h=yes
>> ac_cv_header_sys_timeb_h=yes
>> ac_cv_header_sys_types_h=yes
>> ac_cv_header_szlib_h=yes
>> ac_cv_header_time=yes
>> ac_cv_header_unistd_h=yes
>> ac_cv_header_winsock2_h=no
>> ac_cv_header_zlib_h=yes
>> ac_cv_host=x86_64-pc-none
>> ac_cv_lib_dl_dlopen=yes
>> ac_cv_lib_dld_shl_load=no
>> ac_cv_lib_m_ceil=yes
>> ac_cv_lib_sz_SZ_BufftoBuffCompress=yes
>> ac_cv_lib_z_compress2=yes
>> ac_cv_objext=o
>> ac_cv_path_EGREP='/usr/bin/grep -E'
>> ac_cv_path_FGREP='/usr/bin/grep -F'
>> ac_cv_path_GREP=/usr/bin/grep
>> ac_cv_path_SED=/usr/bin/sed
>> ac_cv_path_TR=/usr/bin/tr
>> ac_cv_path_install='/usr/bin/install -c'
>> ac_cv_path_mkdir=/usr/bin/mkdir
>> ac_cv_prog_AR=ar
>> ac_cv_prog_AWK=gawk
>> ac_cv_prog_CPP='gcc -E'
>> ac_cv_prog_CXXCPP='g++ -E'
>> ac_cv_prog_PERL=perl
>> ac_cv_prog_ac_ct_CC=gcc
>> ac_cv_prog_ac_ct_CXX=g++
>> ac_cv_prog_ac_ct_FC=gfortran
>> ac_cv_prog_ac_ct_OBJDUMP=objdump
>> ac_cv_prog_ac_ct_RANLIB=ranlib
>> ac_cv_prog_ac_ct_STRIP=strip
>> ac_cv_prog_cc_c89=
>> ac_cv_prog_cc_g=yes
>> ac_cv_prog_cxx_g=yes
>> ac_cv_prog_fc_g=yes
>> ac_cv_prog_fc_v=-v
>> ac_cv_prog_make_make_set=yes
>> ac_cv_search_clock_gettime='none required'
>> ac_cv_sizeof___int64=0
>> ac_cv_sizeof_char=1
>> ac_cv_sizeof_double=8
>> ac_cv_sizeof_float=4
>> ac_cv_sizeof_int16_t=2
>> ac_cv_sizeof_int32_t=4
>> ac_cv_sizeof_int64_t=8
>> ac_cv_sizeof_int8_t=1
>> ac_cv_sizeof_int=4
>> ac_cv_sizeof_int_fast16_t=8
>> ac_cv_sizeof_int_fast32_t=8
>> ac_cv_sizeof_int_fast64_t=8
>> ac_cv_sizeof_int_fast8_t=1
>> ac_cv_sizeof_int_least16_t=2
>> ac_cv_sizeof_int_least32_t=4
>> ac_cv_sizeof_int_least64_t=8
>> ac_cv_sizeof_int_least8_t=1
>> ac_cv_sizeof_long=8
>> ac_cv_sizeof_long_double=16
>> ac_cv_sizeof_long_long=8
>> ac_cv_sizeof_off64_t=0
>> ac_cv_sizeof_off_t=8
>> ac_cv_sizeof_ptrdiff_t=8
>> ac_cv_sizeof_short=2
>> ac_cv_sizeof_size_t=8
>> ac_cv_sizeof_ssize_t=8
>> ac_cv_sizeof_uint16_t=2
>> ac_cv_sizeof_uint32_t=4
>> ac_cv_sizeof_uint64_t=8
>> ac_cv_sizeof_uint8_t=1
>> ac_cv_sizeof_uint_fast16_t=8
>> ac_cv_sizeof_uint_fast32_t=8
>> ac_cv_sizeof_uint_fast64_t=8
>> ac_cv_sizeof_uint_fast8_t=1
>> ac_cv_sizeof_uint_least16_t=2
>> ac_cv_sizeof_uint_least32_t=4
>> ac_cv_sizeof_uint_least64_t=8
>> ac_cv_sizeof_uint_least8_t=1
>> ac_cv_sizeof_unsigned=4
>> ac_cv_sys_file_offset_bits=no
>> ac_cv_type_off_t=yes
>> ac_cv_type_ptrdiff_t=yes
>> ac_cv_type_size_t=yes
>> ac_cv_type_ssize_t=yes
>> am_cv_CC_dependencies_compiler_type=gcc3
>> am_cv_CXX_dependencies_compiler_type=gcc3
>> am_cv_make_support_nested_variables=yes
>> am_cv_prog_cc_c_o=yes
>> hdf5_cv_host=x86_64-pc-none
>> hdf5_cv_printf_ll=l
>> hdf5_cv_system_scope_threads=yes
>> hdf5_cv_szlib_can_encode=yes
>> lt_cv_ar_at_file=@
>> lt_cv_archive_cmds_need_lc=no
>> lt_cv_deplibs_check_method=unknown
>> lt_cv_dlopen=dlopen
>> lt_cv_dlopen_libs=-ldl
>> lt_cv_dlopen_self=yes
>> lt_cv_dlopen_self_static=no
>> lt_cv_file_magic_cmd='$MAGIC_CMD'
>> lt_cv_file_magic_test_file=
>> lt_cv_ld_reload_flag=-r
>> lt_cv_nm_interface='BSD nm'
>> lt_cv_objdir=.libs
>> lt_cv_path_LD=/usr/bin/ld
>> lt_cv_path_NM='/usr/bin/nm -B'
>> lt_cv_path_mainfest_tool=no
>> lt_cv_prog_compiler_c_o=yes
>> lt_cv_prog_compiler_c_o_FC=yes
>> lt_cv_prog_compiler_pic='-fPIC -DPIC'
>> lt_cv_prog_compiler_pic_FC=-fPIC
>> lt_cv_prog_compiler_pic_works=yes
>> lt_cv_prog_compiler_pic_works_FC=yes
>> lt_cv_prog_compiler_rtti_exceptions=no
>> lt_cv_prog_compiler_static_works=yes
>> lt_cv_prog_compiler_static_works_FC=no
>> lt_cv_prog_gnu_ld=yes
>> lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
>> lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[
]$[ABCDGIRSTW][ABCDGIRSTW]*$[ ][
]*$[_A-Za-z][_A-Za-z0-9]*$$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
>> lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: $[^
]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* $[^ ]*$
$[^ ]*$$/ {"\2", (void *) \&\2},/p'\'''
>> lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e
'\''s/^: $[^ ]*$[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e
'\''s/^[ABCDGIRSTW]* $[^ ]*$ $lib[^ ]*$$/ {"\2", (void *) \&\2},/p'\''
-e '\''s/^[ABCDGIRSTW]* $[^ ]*$ $[^ ]*$$/ {"lib\2", (void *)
\&\2},/p'\'''
>> lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* $.*$$/extern
int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* $.*$$/extern char \1;/p'\'''
>> lt_cv_sys_max_cmd_len=1572864
>> lt_cv_to_host_file_cmd=func_convert_file_noop
>> lt_cv_to_tool_file_cmd=func_convert_file_noop
>>
>> ## ----------------- ##
>> ## Output variables. ##
>> ## ----------------- ##
>>
>> ACLOCAL='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing
aclocal-1.14'
>> ADD_PARALLEL_FILES=''
>> AMDEPBACKSLASH='\'
>> AMDEP_FALSE='#'
>> AMDEP_TRUE=''
>> AMTAR='$${TAR-tar}'
>> AM_BACKSLASH='\'
>> AM_CFLAGS=''
>> AM_CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
>> AM_CXXFLAGS=''
>> AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
>> AM_DEFAULT_VERBOSITY='0'
>> AM_FCFLAGS=''
>> AM_LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
>> AM_MAKEFLAGS=''
>> AM_V='$(V)'
>> AR='ar'
>> AUTOCONF='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing
autoconf'
>> AUTOHEADER='${SHELL}
/home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing autoheader'
>> AUTOMAKE='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing
automake-1.14'
>> AWK='gawk'
>> BUILD_ALL_CONDITIONAL_FALSE=''
>> BUILD_ALL_CONDITIONAL_TRUE=''
>> BUILD_CXX_CONDITIONAL_FALSE=''
>> BUILD_CXX_CONDITIONAL_TRUE=''
>> BUILD_FORTRAN_CONDITIONAL_FALSE=''
>> BUILD_FORTRAN_CONDITIONAL_TRUE=''
>> BUILD_HDF5_HL_CONDITIONAL_FALSE=''
>> BUILD_HDF5_HL_CONDITIONAL_TRUE=''
>> BUILD_PARALLEL_CONDITIONAL_FALSE=''
>> BUILD_PARALLEL_CONDITIONAL_TRUE=''
>> BUILD_SHARED_SZIP_CONDITIONAL_FALSE='#'
>> BUILD_SHARED_SZIP_CONDITIONAL_TRUE=''
>> BYTESEX=''
>> CC='gcc'
>> CCDEPMODE='depmode=gcc3'
>> CC_VERSION=''
>> CFLAGS=' '
>> CLEARFILEBUF='yes'
>> CODESTACK='no'
>> CONFIG_DATE=''
>> CONFIG_MODE='production'
>> CONFIG_USER=''
>> CPP='gcc -E'
>> CPPFLAGS=' -I/opt/zlib/include -I/opt/szip/include'
>> CXX='no'
>> CXXCPP='g++ -E'
>> CXXDEPMODE='depmode=gcc3'
>> CXXFLAGS=' '
>> CXX_VERSION=''
>> CYGPATH_W='echo'
>> DEBUG_PKG=''
>> DEFAULT_API_VERSION=''
>> DEFS=''
>> DEPDIR='.deps'
>> DEPRECATED_SYMBOLS=''
>> DIRECT_VFD='no'
>> DIRECT_VFD_CONDITIONAL_FALSE=''
>> DIRECT_VFD_CONDITIONAL_TRUE=''
>> DLLTOOL='false'
>> DSYMUTIL=''
>> DUMPBIN=''
>> ECHO_C=''
>> ECHO_N='-n'
>> ECHO_T=''
>> EGREP='/usr/bin/grep -E'
>> EXEEXT=''
>> EXTERNAL_FILTERS='deflate(zlib),szip(encoder)'
>> F9XMODEXT='mod'
>> F9XMODFLAG='-I'
>> F9XSUFFIXFLAG=''
>> FC2003=''
>> FC='gfortran'
>> FCFLAGS='-I. '
>> FCFLAGS_f90=''
>> FCLIBS=' -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../../../lib -L/lib/../lib
-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-unknown-linux-gnu/5.1.0/../../..
-lgfortran -lm -lquadmath'
>> FC_VERSION=''
>> FGREP='/usr/bin/grep -F'
>> FORTRAN_2003_CONDITIONAL_F_FALSE='#'
>> FORTRAN_2003_CONDITIONAL_F_TRUE=''
>> FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
>> FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#'
>> FORTRAN_HAVE_C_SIZEOF_FALSE='#'
>> FORTRAN_HAVE_C_SIZEOF_TRUE=''
>> FORTRAN_HAVE_SIZEOF_FALSE='#'
>> FORTRAN_HAVE_SIZEOF_TRUE=''
>> FORTRAN_HAVE_STORAGE_SIZE_FALSE='#'
>> FORTRAN_HAVE_STORAGE_SIZE_TRUE=''
>> FORTRAN_SHARED_CONDITIONAL_FALSE='#'
>> FORTRAN_SHARED_CONDITIONAL_TRUE=''
>> FSEARCH_DIRS=''
>> GREP='/usr/bin/grep'
>> H5_CFLAGS=' '
>> H5_CPPFLAGS=' -DNDEBUG -UH5_DEBUG_API'
>> H5_CXXFLAGS=' '
>> H5_FCFLAGS=' '
>> H5_FORTRAN_SHARED='yes'
>> H5_LDFLAGS=''
>> H5_VERSION=''
>> HADDR_T=''
>> HAVE_DMALLOC='no'
>> HAVE_FORTRAN_2003='yes'
>> HAVE_PTHREAD=''
>> HAVE_SHARED_CONDITIONAL_FALSE=''
>> HAVE_SHARED_CONDITIONAL_TRUE=''
>> HDF5_HL='yes'
>> HDF5_INTERFACES=' fortran'
>> HDF_CXX='no'
>> HDF_FORTRAN2003='yes'
>> HDF_FORTRAN='yes'
>> HID_T=''
>> HL='hl'
>> HL_FOR=''
>> HSIZE_T=''
>> HSSIZE_T=''
>> INSTALL_DATA='${INSTALL} -m 644'
>> INSTALL_PROGRAM='${INSTALL}'
>> INSTALL_SCRIPT='${INSTALL}'
>> INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
>> INSTRUMENT='no'
>> INSTRUMENT_LIBRARY='no'
>> LD='/usr/bin/ld'
>> LDFLAGS=' -L/opt/zlib/lib -L/opt/szip/lib'
>> LIBOBJS=''
>> LIBS='-lsz -lz -ldl -lm '
>> LIBTOOL='$(SHELL) $(top_builddir)/libtool'
>> LIPO=''
>> LL_PATH='/opt/szip/lib'
>> LN_S='ln -s'
>> LTLIBOBJS=''
>> LT_STATIC_EXEC=''
>> MAINT='#'
>> MAINTAINER_MODE_FALSE=''
>> MAINTAINER_MODE_TRUE='#'
>> MAKEINFO='${SHELL} /home/mabalenk/install/hdf5/hdf5-1.8.15/bin/missing
makeinfo'
>> MANIFEST_TOOL=':'
>> MKDIR_P='/usr/bin/mkdir -p'
>> MPE='no'
>> NM='/usr/bin/nm -B'
>> NMEDIT=''
>> OBJDUMP='objdump'
>> OBJECT_NAMELEN_DEFAULT_F=''
>> OBJEXT='o'
>> OTOOL64=''
>> OTOOL=''
>> PACKAGE='hdf5'
>> PACKAGE_BUGREPORT='help@hdfgroup.org'
>> PACKAGE_NAME='HDF5'
>> PACKAGE_STRING='HDF5 1.8.15'
>> PACKAGE_TARNAME='hdf5'
>> PACKAGE_URL=''
>> PACKAGE_VERSION='1.8.15'
>> PARALLEL='yes'
>> PATH_SEPARATOR=':'
>> PERL='perl'
>> RANLIB='ranlib'
>> ROOT=''
>> RUNPARALLEL=''
>> RUNSERIAL=''
>> R_INTEGER=''
>> R_LARGE=''
>> SEARCH=''
>> SED='/usr/bin/sed'
>> SET_MAKE=''
>> SHELL='/bin/sh'
>> SIZE_T=''
>> STATIC_EXEC='no'
>> STATIC_SHARED=''
>> STRICT_FORMAT_CHECKS=''
>> STRIP='strip'
>> TESTPARALLEL=''
>> THREADSAFE='no'
>> TIME=''
>> TR='/usr/bin/tr'
>> TRACE_API='no'
>> UNAME_INFO='Linux turing 4.0.4-2-ARCH #1 SMP PREEMPT Fri May 22
03:05:23 UTC 2015 x86_64 GNU/Linux'
>> USE_FILTER_DEFLATE='yes'
>> USE_FILTER_SZIP='yes'
>> USE_PLUGINS_CONDITIONAL_FALSE='#'
>> USE_PLUGINS_CONDITIONAL_TRUE=''
>> USINGMEMCHECKER='no'
>> VERSION='1.8.15'
>> WORDS_BIGENDIAN=''
>> ac_ct_AR=''
>> ac_ct_CC='gcc'
>> ac_ct_CXX='g++'
>> ac_ct_DUMPBIN=''
>> ac_ct_FC='gfortran'
>> am__EXEEXT_FALSE=''
>> am__EXEEXT_TRUE=''
>> am__fastdepCC_FALSE='#'
>> am__fastdepCC_TRUE=''
>> am__fastdepCXX_FALSE='#'
>> am__fastdepCXX_TRUE=''
>> am__include='include'
>> am__isrc=''
>> am__leading_dot='.'
>> am__nodep='_no'
>> am__quote=''
>> am__tar='$${TAR-tar} chof - "$$tardir"'
>> am__untar='$${TAR-tar} xf -'
>> bindir='${exec_prefix}/bin'
>> build='x86_64-pc-none'
>> build_alias='x86_64'
>> build_cpu='x86_64'
>> build_os='none'
>> build_vendor='pc'
>> datadir='${datarootdir}'
>> datarootdir='${prefix}/share'
>> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
>> dvidir='${docdir}'
>> enable_shared='no'
>> enable_static='yes'
>> exec_prefix='NONE'
>> host='x86_64-pc-none'
>> host_alias=''
>> host_cpu='x86_64'
>> host_os='none'
>> host_vendor='pc'
>> htmldir='${docdir}'
>> includedir='${prefix}/include'
>> infodir='${datarootdir}/info'
>> install_sh='${SHELL}
/home/mabalenk/install/hdf5/hdf5-1.8.15/bin/install-sh'
>> libdir='${exec_prefix}/lib'
>> libexecdir='${exec_prefix}/libexec'
>> localedir='${datarootdir}/locale'
>> localstatedir='${prefix}/var'
>> mandir='${datarootdir}/man'
>> mkdir_p='$(MKDIR_P)'
>> oldincludedir='/usr/include'
>> pdfdir='${docdir}'
>> prefix='/opt/hdf5'
>> program_transform_name='s,x,x,'
>> psdir='${docdir}'
>> sbindir='${exec_prefix}/sbin'
>> sharedstatedir='${prefix}/com'
>> sysconfdir='${prefix}/etc'
>> target_alias=''
>>
>> ## ----------- ##
>> ## confdefs.h. ##
>> ## ----------- ##
>>
>> /* confdefs.h */
>> #define PACKAGE_NAME "HDF5"
>> #define PACKAGE_TARNAME "hdf5"
>> #define PACKAGE_VERSION "1.8.15"
>> #define PACKAGE_STRING "HDF5 1.8.15"
>> #define PACKAGE_BUGREPORT "help@hdfgroup.org"
>> #define PACKAGE_URL ""
>> #define PACKAGE "hdf5"
>> #define VERSION "1.8.15"
>> #define FC_FUNC(name,NAME) name ## _
>> #define FC_FUNC_(name,NAME) name ## _
>> #define INCLUDE_HL 1
>> #define STDC_HEADERS 1
>> #define HAVE_SYS_TYPES_H 1
>> #define HAVE_SYS_STAT_H 1
>> #define HAVE_STDLIB_H 1
>> #define HAVE_STRING_H 1
>> #define HAVE_MEMORY_H 1
>> #define HAVE_STRINGS_H 1
>> #define HAVE_INTTYPES_H 1
>> #define HAVE_STDINT_H 1
>> #define HAVE_UNISTD_H 1
>> #define HAVE_DLFCN_H 1
>> #define LT_OBJDIR ".libs/"
>> #define HAVE_LIBM 1
>> #define HAVE_LIBDL 1
>> #define STDC_HEADERS 1
>> #define TIME_WITH_SYS_TIME 1
>> #define HAVE_SYS_RESOURCE_H 1
>> #define HAVE_SYS_TIME_H 1
>> #define HAVE_UNISTD_H 1
>> #define HAVE_SYS_IOCTL_H 1
>> #define HAVE_SYS_STAT_H 1
>> #define HAVE_SYS_SOCKET_H 1
>> #define HAVE_SYS_TYPES_H 1
>> #define HAVE_STDDEF_H 1
>> #define HAVE_SETJMP_H 1
>> #define HAVE_FEATURES_H 1
>> #define HAVE_DIRENT_H 1
>> #define HAVE_STDINT_H 1
>> #define HAVE_SYS_TIMEB_H 1
>> #define HAVE_FSEEKO 1
>> #define HAVE_FTELLO 1
>> #define SIZEOF_CHAR 1
>> #define SIZEOF_SHORT 2
>> #define SIZEOF_INT 4
>> #define SIZEOF_UNSIGNED 4
>> #define SIZEOF_LONG 8
>> #define SIZEOF_LONG_LONG 8
>> #define SIZEOF___INT64 0
>> #define SIZEOF_FLOAT 4
>> #define SIZEOF_DOUBLE 8
>> #define SIZEOF_LONG_DOUBLE 16
>> #include <sys/types.h>
>> #include <stdint.h>
>> #define SIZEOF_INT8_T 1
>> #define SIZEOF_UINT8_T 1
>> #define SIZEOF_INT_LEAST8_T 1
>> #define SIZEOF_UINT_LEAST8_T 1
>> #define SIZEOF_INT_FAST8_T 1
>> #define SIZEOF_UINT_FAST8_T 1
>> #define SIZEOF_INT16_T 2
>> #define SIZEOF_UINT16_T 2
>> #define SIZEOF_INT_LEAST16_T 2
>> #define SIZEOF_UINT_LEAST16_T 2
>> #define SIZEOF_INT_FAST16_T 8
>> #define SIZEOF_UINT_FAST16_T 8
>> #define SIZEOF_INT32_T 4
>> #define SIZEOF_UINT32_T 4
>> #define SIZEOF_INT_LEAST32_T 4
>> #define SIZEOF_UINT_LEAST32_T 4
>> #define SIZEOF_INT_FAST32_T 8
>> #define SIZEOF_UINT_FAST32_T 8
>> #define SIZEOF_INT64_T 8
>> #define SIZEOF_UINT64_T 8
>> #define SIZEOF_INT_LEAST64_T 8
>> #define SIZEOF_UINT_LEAST64_T 8
>> #define SIZEOF_INT_FAST64_T 8
>> #define SIZEOF_UINT_FAST64_T 8
>> #define SIZEOF_SIZE_T 8
>> #define SIZEOF_SSIZE_T 8
>> #define SIZEOF_PTRDIFF_T 8
>> #include <sys/types.h> /*for off_t definition*/
>> #define SIZEOF_OFF_T 8
>> #define SIZEOF_OFF64_T 0
>> #define DEV_T_IS_SCALAR 1
>> #define HAVE_ZLIB_H 1
>> #define HAVE_LIBZ 1
>> #define HAVE_FILTER_DEFLATE 1
>> #define HAVE_SZLIB_H 1
>> #define HAVE_LIBSZ 1
>> #define HAVE_FILTER_SZIP 1
>> #define HAVE_TM_GMTOFF 1
>> #define HAVE_TIMEZONE 1
>> #define HAVE_STAT_ST_BLOCKS 1
>> #define HAVE_IOCTL 1
>> #define HAVE_TIOCGWINSZ 1
>> #define HAVE_TIOCGETD 1
>> #define HAVE_ALARM 1
>> #define HAVE_CLOCK_GETTIME 1
>> #define HAVE_DIFFTIME 1
>> #define HAVE_FORK 1
>> #define HAVE_FREXPF 1
>> #define HAVE_FREXPL 1
>> #define HAVE_GETHOSTNAME 1
>> #define HAVE_GETPWUID 1
>> #define HAVE_GETRUSAGE 1
>> #define HAVE_GETTIMEOFDAY 1
>> #define HAVE_LSTAT 1
>> #define HAVE_RAND_R 1
>> #define HAVE_RANDOM 1
>> #define HAVE_SIGNAL 1
>> #define HAVE_LONGJMP 1
>> #define HAVE_SETJMP 1
>> #define HAVE_SIGLONGJMP 1
>> #define HAVE_SIGPROCMASK 1
>> #define HAVE_SNPRINTF 1
>> #define HAVE_SRANDOM 1
>> #define HAVE_STRDUP 1
>> #define HAVE_SYMLINK 1
>> #define HAVE_SYSTEM 1
>> #define HAVE_TMPFILE 1
>> #define HAVE_ASPRINTF 1
>> #define HAVE_VASPRINTF 1
>> #define HAVE_VSNPRINTF 1
>> #define HAVE_WAITPID 1
>> #define HAVE_ATTRIBUTE 1
>> #define HAVE_C99_FUNC 1
>> #define HAVE_FUNCTION 1
>> #define HAVE_C99_DESIGNATED_INITIALIZER 1
>> #define PRINTF_LL_WIDTH "l"
>> #define SYSTEM_SCOPE_THREADS 1
>> #define CLEAR_MEMORY 1
>>
>> configure: exit 1
>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> Hdf-forum@lists.hdfgroup.org
>> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
>> Twitter: https://twitter.com/hdf5
>
>
> --
> -----------------------------------------------------------
> Pierre de Buyl
> KU Leuven - Institute for Theoretical Physics
> T +32 16 3 27355
> W http://pdebuyl.be/
> -----------------------------------------------------------
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@lists.hdfgroup.org
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

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[problem configuring parallel installation of HDF5]