ParaTest.h5 test error and --enable-cxx options

I run the test program after I installed HDF5. Most of the test is OK, but ParaTest.h5.

The error information at the end of the information is like:

Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
rank 3 in job 47 athena.coeaccess.psu.edu_57522 caused collective abort of all ranks
  exit status of rank 3: killed by signal 9
0.06user 0.01system 0:01.72elapsed 4%CPU (0avgtext+0avgdata 43104maxresident)k
0inputs+32outputs (0major+3048minor)pagefaults 0swaps
make[4]: *** [testphdf5.chkexe_] Error 1
make[4]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[3]: *** [build-check-p] Error 1
make[3]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[2]: *** [test] Error 2
make[2]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make: *** [check-recursive] Error 1

Is HDF5 installed successfully?

Another problem is that the --enable-cxx and --enable-parallel are not compatible when I run
./configure --enable-cxx --enable-fortran --enable-parallel --enable-debug=all.

If I use
$ ./configure --enable-fortran --enable-debug=all --enable-parallel --enable-upsupported
then the C++ interface is set as no after the configuration.

Since I want to use HDF5 in c++ language and MPI, is it OK that these two options are not compatible?

Thanks.

Hi Roc,

You need to provide a little more information:

  * platform you are using
  * MPI library and version you are using
  * config.log
  * configure & make output
  * make check output

Thanks,
Mohamad

···

On 5/1/2013 10:54 AM, Roc Wang wrote:

I run the test program after I installed HDF5. Most of the test is OK, but ParaTest.h5.

The error information at the end of the information is like:

Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
rank 3 in job 47 athena.coeaccess.psu.edu_57522 caused collective abort of all ranks
  exit status of rank 3: killed by signal 9
0.06user 0.01system 0:01.72elapsed 4%CPU (0avgtext+0avgdata 43104maxresident)k
0inputs+32outputs (0major+3048minor)pagefaults 0swaps
make[4]: *** [testphdf5.chkexe_] Error 1
make[4]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[3]: *** [build-check-p] Error 1
make[3]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[2]: *** [test] Error 2
make[2]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make: *** [check-recursive] Error 1

Is HDF5 installed successfully?

Another problem is that the --enable-cxx and --enable-parallel are not compatible when I run
./configure --enable-cxx --enable-fortran --enable-parallel --enable-debug=all.

If I use
$ ./configure --enable-fortran --enable-debug=all --enable-parallel --enable-upsupported
then the C++ interface is set as no after the configuration.

Since I want to use HDF5 in c++ language and MPI, is it OK that these two options are not compatible?

Thanks.

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@hdfgroup.org
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org