I run the test program after I installed HDF5. Most of the test is OK, but ParaTest.h5.
The error information at the end of the information is like:
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
rank 3 in job 47 athena.coeaccess.psu.edu_57522 caused collective abort of all ranks
exit status of rank 3: killed by signal 9
0.06user 0.01system 0:01.72elapsed 4%CPU (0avgtext+0avgdata 43104maxresident)k
0inputs+32outputs (0major+3048minor)pagefaults 0swaps
make[4]: *** [testphdf5.chkexe_] Error 1
make[4]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[3]: *** [build-check-p] Error 1
make[3]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[2]: *** [test] Error 2
make[2]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make: *** [check-recursive] Error 1
Is HDF5 installed successfully?
Another problem is that the --enable-cxx and --enable-parallel are not compatible when I run
./configure --enable-cxx --enable-fortran --enable-parallel --enable-debug=all.
If I use
$ ./configure --enable-fortran --enable-debug=all --enable-parallel --enable-upsupported
then the C++ interface is set as no after the configuration.
Since I want to use HDF5 in c++ language and MPI, is it OK that these two options are not compatible?
Thanks.
Hi Roc,
You need to provide a little more information:
* platform you are using
* MPI library and version you are using
* config.log
* configure & make output
* make check output
Thanks,
Mohamad
···
On 5/1/2013 10:54 AM, Roc Wang wrote:
I run the test program after I installed HDF5. Most of the test is OK, but ParaTest.h5.
The error information at the end of the information is like:
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
Testing -- test lower dim size comp in span tree to mpi derived type (tldsc)
rank 3 in job 47 athena.coeaccess.psu.edu_57522 caused collective abort of all ranks
exit status of rank 3: killed by signal 9
0.06user 0.01system 0:01.72elapsed 4%CPU (0avgtext+0avgdata 43104maxresident)k
0inputs+32outputs (0major+3048minor)pagefaults 0swaps
make[4]: *** [testphdf5.chkexe_] Error 1
make[4]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[3]: *** [build-check-p] Error 1
make[3]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[2]: *** [test] Error 2
make[2]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory `/home/pwang/soft/hdf5-1.8.10-patch1/testpar'
make: *** [check-recursive] Error 1
Is HDF5 installed successfully?
Another problem is that the --enable-cxx and --enable-parallel are not compatible when I run
./configure --enable-cxx --enable-fortran --enable-parallel --enable-debug=all.
If I use
$ ./configure --enable-fortran --enable-debug=all --enable-parallel --enable-upsupported
then the C++ interface is set as no after the configuration.
Since I want to use HDF5 in c++ language and MPI, is it OK that these two options are not compatible?
Thanks.
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