When building with hdf5/1.8.13 with the following configure line:
./configure CC=gcc CXX=g++ FC=gfortran --disable-silent-rules --enable-fortran --enable-fortran2003 --enable-static --with-pic --disable-sharedlib-rpath --enable-shared --enable-cxx
With the gcc, g++ and gfortran resolving to gcc/4.9 I see the following failures:
grep "FAILED" gcc49.check.out
Testing hard signed char -> long double conversions *FAILED*
Testing hard unsigned char -> long double conversions *FAILED*
Testing hard short -> long double conversions *FAILED*
Testing hard unsigned short -> long double conversions *FAILED*
Testing hard int -> long double conversions *FAILED*
Testing hard unsigned int -> long double conversions *FAILED*
Testing hard long -> long double conversions *FAILED*
Has anyone else observed this ? Is there a workaround. Thanks.
Sean B.
···
From: Elena Pourmal <epourmal@hdfgroup.org<mailto:epourmal@hdfgroup.org>>
Reply-To: HDF Users Discussion List <hdf-forum@lists.hdfgroup.org<mailto:hdf-forum@lists.hdfgroup.org>>
Date: Thursday, May 15, 2014 2:35 PM
To: HDF Users Discussion List <hdf-forum@lists.hdfgroup.org<mailto:hdf-forum@lists.hdfgroup.org>>
Subject: Re: [Hdf-forum] make check-install fails with HDF5 1.8.13
Ekin,
On May 15, 2014, at 1:42 PM, Ekin Akoglu <ekin@ims.metu.edu.tr<mailto:ekin@ims.metu.edu.tr>> wrote:
Dear Elena,
Changing to the directory hdf5-1.8.13/fortran/examples and then issuing
$ h5fc -o h5_crtdat h5_crtdat.f90
works. However, the check-install complains about not being able to open h5_crtdat.o to write, which already exists. I checked the permissions of that file and they are correct: 644, so write is allowed.
Do you have an idea?
No idea at this point. We couldn't reproduce the problem here on one of our machines with Intel Fortran compiler.
Could you please try to run run-fortran-ex.sh in that directory?
./run-fortran-ex.sh
Thank you!
Elena
Thank you,
Ekin
On 15 May 2014 19:47, Elena Pourmal <epourmal@hdfgroup.org<mailto:epourmal@hdfgroup.org>> wrote:
Ekin,
It looks like that for some reason Fortran compiler cannot write *.o file. Could it be that you ran out of space? Is there quota on your system? Was /tmp partition full?
I would try to run make check-install the second time, or go to /usr/local/hdf5-1.8.13/share/hdf5_examples/fortran and try to run the following command
../../../bin/h5fc -o h5_crtdat h5_crtdat.f90
and see if it works.
Elena
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Elena Pourmal The HDF Group http://hdfgroup.org<http://hdfgroup.org/>
1800 So. Oak St., Suite 203, Champaign IL 61820
217.531.6112
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
On May 15, 2014, at 10:30 AM, Ekin Akoglu <ekin@ims.metu.edu.tr<mailto:ekin@ims.metu.edu.tr>> wrote:
Dear Elena,
The OS is 64-bit Debian Wheezy 7.5. The compiler is Intel Fortran Compiler 2013 SP1 Update 3, which is exactly 14.0.3 20140422. My GCC version is 4.7.2. I built and installed HDF5 as follows:
$ ./configure --prefix=/usr/local/hdf5-1.8.13 --enable-fortran --enable-fortran2003
$ make
$ make check
# make install
$ make check-install
Everything except the "make check-install" step worked flawlessly.
Thank you.
Kind regards,
Ekin
On 15 May 2014 17:11, Elena Pourmal <epourmal@hdfgroup.org<mailto:epourmal@hdfgroup.org>> wrote:
Ekin,
Could you please provide OS and compiler information? It would also help if you post the outputs of the commands used to build and install the HDF5 libraries.
Thank you!
Elena
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Elena Pourmal The HDF Group http://hdfgroup.org<http://hdfgroup.org/>
1800 So. Oak St., Suite 203, Champaign IL 61820
217.531.6112
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
On May 15, 2014, at 9:10 AM, Ekin Akoglu <ekin@ims.metu.edu.tr<mailto:ekin@ims.metu.edu.tr>> wrote:
Dear all,
I have just installed the HDF5 version 1.8.13 and the check-install process failed with:
============================
Testing run-fortran-ex.sh
################# h5_crtdat #################
error: can't open file h5_crtdat.o for write
compilation aborted for h5_crtdat.f90 (code 1)
messed up compiling h5_crtdat.f90
rm: cannot remove `*.o': No such file or directory
rm: cannot remove `*.h5': No such file or directory
make[3]: *** [installcheck-local] Error 1
make[3]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran/examples'
make[2]: *** [installcheck-local] Error 1
make[2]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran'
make[1]: *** [installcheck-recursive] Error 1
make[1]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran'
make: *** [installcheck-recursive] Error 1
Regards,
Ekin
On 15 May 2014 15:20, <help@hdfgroup.org<mailto:help@hdfgroup.org>> wrote:
To view from a browser see:
http://www.hdfgroup.org/newsletters/newsletter140.html
--------------------------------------------------------------------------
The HDF Group Home Page: http://www.hdfgroup.org/
Support Services: http://www.hdfgroup.org/services/
--------------------------------------------------------------------------
Newsletter #140
May 15, 2014
CONTENTS
. Release of HDF5-1.8.13
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Release of HDF5 1.8.13
The HDF5-1.8.13 release is now available, and can be downloaded from the
HDF Group Downloads page:
http://www.hdfgroup.org/downloads/
It can also be obtained directly from:
http://www.hdfgroup.org/HDF5/release/obtain5.html
HDF5-1.8.13 is a minor release, with a few new features and changes.
Important changes include:
o The H5free_memory (C) api was added to free memory that was allocated
by HDF5 API calls. This was added specifically for Windows, but may be
useful anywhere that the library uses a different memory manager than
the application.
o New wrappers were added for C++ (many) and Fortran
(h5pset_file_image_f and h5pget_file_image_f).
o Mac OS X 10.9 Mavericks is now supported.
o Many improvements were added in support of CMake, including the
addition of support for CMake 2.8.11.
o Improvements were added to the Core VFD (or Memory VFD).
o The following changes were made to Parallel HDF5:
- The MPI-POSIX VFD was removed. Application developers should
always use the MPI-IO VFD.
- Parallel HDF5 now supports collective I/O on point selections.
o A few changes were added to the tools (h5diff, h5dump, and h5repack).
This release contains many other changes that are not listed here.
Please be sure to read the Release Notes for a comprehensive list of
new features and changes:
http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13-RELEASE.txt
Changes that affect maintainers of HDF5-dependent applications are
listed in "HDF5 Software Changes from Release to Release". See:
http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Future Changes to Supported Platforms
-------------------------------------
Please be aware that after this release, we will be moving to
CMake 3.0, and will add testing for VS 2013. VS 2012 will remain
the standard.
In addition, we will only support Cygwin built with CMake, and will
be dropping VS 2010.
-------------------------------------------------------------
For questions regarding these or other HDF issues, contact:
help@hdfgroup.org<mailto:help@hdfgroup.org>
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org<mailto:Hdf-forum@lists.hdfgroup.org>
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org<mailto:Hdf-forum@lists.hdfgroup.org>
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org<mailto:Hdf-forum@lists.hdfgroup.org>
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org<mailto:Hdf-forum@lists.hdfgroup.org>
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org<mailto:Hdf-forum@lists.hdfgroup.org>
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org<mailto:Hdf-forum@lists.hdfgroup.org>
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org