Dear HDF group,
I am trying to build the hdf5-1.8.12 on a linux cluster with the following
commands-
CC=mpicc ./configure --prefix=$RLIB --with-zlib=$RLIB --with-szlib=$RLIB
when I run make after configuration, with some deprecation warnings the
make command completes successfully, but make check reflects error as
following-
ph5diff tests failed with 16 errors.
107.97user 162.33system 1:49.05elapsed 247%CPU (0avgtext+0avgdata
309168maxresident)k
0inputs+28392outputs (0major+5449773minor)pagefaults 0swaps
make[5]: *** [testph5diff.sh.chkexe_] Error 1
make[5]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff'
make[4]: *** [build-check-p] Error 1
make[4]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff'
make[3]: *** [test] Error 2
make[3]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff'
make[2]: *** [check-am] Error 2
make[2]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools'
make: *** [check-recursive] Error 1
However the make install completes successfully. I am not able to
understand this error. please help me out this error.
I have installed openmpi-1.8.4 in $RLIB=/export/home/pmaharana/RLIB with
the following options-
./configure --prefix=/export/home/pmaharana/RLIB CC=icc FC=ifort F77=ifort
CXX=icpc
I am attaching the config.log file for your reference herewith.
Thanks in anticipation
Dhirendra
config.log (228 KB)
···
--
Dhirendra Kumar
UGC-JRF
School of Environmental Sciences, JNU
New Delhi (India)
Contact: +91 9910778043
Alternate email: dhirendra.cub@outlook.com
Hi Dhirendra,
ph5diff tests compare output from running some erroneous tests to expected output that is stored as text files. I bet the errors you are seeing are some extra or different output that open mpi prints on termination that causes the comparison to fail. So I wouldn’t worry about it too much, and you can just skip over the failures with make -i check
To confirm that the errors you are seeing are output comparison, run the ph5diff tests manually.
May I also suggest that you upgrade to HDF5 1.8.15 then try again? You could also update open-mpi to latest too.
Thanks,
Mohamad
···
From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf Of Dhirendra Kumar
Sent: Wednesday, July 22, 2015 5:06 AM
To: hdf-forum@lists.hdfgroup.org
Subject: [Hdf-forum] Make check error : hdf5-1.8.12
Dear HDF group,
I am trying to build the hdf5-1.8.12 on a linux cluster with the following commands-
CC=mpicc ./configure --prefix=$RLIB --with-zlib=$RLIB --with-szlib=$RLIB
when I run make after configuration, with some deprecation warnings the make command completes successfully, but make check reflects error as following-
ph5diff tests failed with 16 errors.
107.97user 162.33system 1:49.05elapsed 247%CPU (0avgtext+0avgdata 309168maxresident)k
0inputs+28392outputs (0major+5449773minor)pagefaults 0swaps
make[5]: *** [testph5diff.sh.chkexe_] Error 1
make[5]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff'
make[4]: *** [build-check-p] Error 1
make[4]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff'
make[3]: *** [test] Error 2
make[3]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff'
make[2]: *** [check-am] Error 2
make[2]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools/h5diff'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/home/pmaharana/RLIB/hdf5-1.8.12/tools'
make: *** [check-recursive] Error 1
However the make install completes successfully. I am not able to understand this error. please help me out this error.
I have installed openmpi-1.8.4 in $RLIB=/export/home/pmaharana/RLIB with the following options-
./configure --prefix=/export/home/pmaharana/RLIB CC=icc FC=ifort F77=ifort CXX=icpc
I am attaching the config.log file for your reference herewith.
Thanks in anticipation
[https://ssl.gstatic.com/ui/v1/icons/mail/images/cleardot.gif]Dhirendra
--
Dhirendra Kumar
UGC-JRF
School of Environmental Sciences, JNU
New Delhi (India)
Contact: +91 9910778043
Alternate email: dhirendra.cub@outlook.com<mailto:dhirendra.cub@outlook.com>
