Hi,
I have been trying to install hdf5-1.6.1 in my linux-Ubuntu 9.04 machine. I had downloaded the tar.gz file. Unzipped it. And followed the installation
1) sudo ./configure --prefix=/usr/local/minc2
2) sudo make
3) sudo make install
After step 1), I have the following output (please refer to libhdf5settings.txt attached in this email).
On step 2), I have the following error (please refer to ste2_error.txt)
Could you please let me know what would fix this problem. I am totally stuck at this point.
Thanks,
Lak
lihdf5settings (2.43 KB)
ste2_error (890 Bytes)
Hi Lak,
Hi,
I have been trying to install hdf5-1.6.1 in my linux-Ubuntu 9.04 machine. I had downloaded the tar.gz file. Unzipped it. And followed the installation
1) sudo ./configure --prefix=/usr/local/minc2
2) sudo make
3) sudo make install
After step 1), I have the following output (please refer to libhdf5settings.txt attached in this email).
On step 2), I have the following error (please refer to ste2_error.txt)
Could you please let me know what would fix this problem. I am totally stuck at this point.
You should be using a much newer version of HDF5. Release 1.6.10 is out (if you want to stick with the 1.6.x releases) or 1.8.4 is also available and preferred.
Quincey
···
On Feb 16, 2010, at 12:30 PM, Lakshminarayan C.V. wrote:
Thanks,
Lak
SUMMARY OF THE HDF5 CONFIGURATION
HDF5 Version: 1.6.1
Configured on: Tue Feb 16 13:10:34 EST 2010
Configured by: root@hippocampus
Configure mode: production
Host system: x86_64-unknown-linux-gnu
Byte sex: little-endian
Libraries: static, shared
Parallel support: no
Installation point: /usr/local/minc2
Compiler: /usr/bin/gcc
Compiler switches: -ansi -pedantic -Wall -W -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Wsign-compare -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -O -fomit-frame-pointer -finline-functions -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE
Extra libraries: -lz -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
File addresses: large
Configure Summary
Compiling Options:
Compilation Mode: Production
C Compiler: gcc
CFLAGS: -ansi -pedantic -Wall -W -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Wsign-compare -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -O -fomit-frame-pointer -finline-functions
CPPFLAGS: -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE
LDFLAGS:
Debug Mode: None
Shared Libraries: Yes
Static Libraries: Yes
Statically Linked Executables: No
Tracing: No
Languages:
C++: No
Fortran: No
Features:
dmalloc: No
Function Stack Tracing: Disabled
GASS: No
GPFS: No
HDF5 v1.4 Compatibility: No
hsize_t: Large
I/O filters (external): deflate
I/O filters (internal): shuffle,fletcher32
Linux Large File Support (LFS): Enabled
MPE: No
Pablo: No
Parallel HDF5: No
SRB: No
Stream VFD: Disabled
Threadsafety: Disabled
lak@hippocampus:/usr/local/minc2/src/hdf5-1.6.1$ sudo make
make lib
make[1]: Entering directory `/usr/local/minc2/src/hdf5-1.6.1'
make[2]: Entering directory `/usr/local/minc2/src/hdf5-1.6.1/src'
LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \
sed -e 's/-L/:/g' -e 's/ //g'`" \
./H5detect > H5Tinit.c || \
(test $HDF5_Make_Ignore && echo "*** Error ignored") || \
(rm -f H5Tinit.c ; exit 1)
H5detect: H5detect.c:812: fix_order: Assertion `0 == n / 2' failed.
/bin/sh: line 4: 9215 Aborted LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | sed -e 's/-L/:/g' -e 's/ //g'`" ./H5detect > H5Tinit.c
make[2]: Leaving directory `/usr/local/minc2/src/hdf5-1.6.1/src'
make[1]: *** [lib] Error 1
make[1]: Leaving directory `/usr/local/minc2/src/hdf5-1.6.1'
make: *** [all] Error 2
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