Is hsload capable of uploading NetCDF4 files? I have a file that fails to upload and hsload gives a core dump. Any ideas what goes wrong?
BR,
Harri
sboxes@osboxes:~$ python --version
Python 3.7.3
osboxes@osboxes:~$ hsload -v -u -p WLS.nc /home/test_user2/
creating attribute title in /
creating attribute Conventions in /
creating attribute institution in /
creating attribute references in /
creating attribute source in /
creating attribute history in /
creating attribute comment in /
creating attribute instrument_name in /
create_links: /
got link: Sweep_119916
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: Sweep_119916
WARNING: could not find map item to src id: 3640696641629669709
got link: altitude
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: altitude
WARNING: could not find map item to src id: 3644576009099261484
got link: georeference_correction
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: georeference_correction
WARNING: could not find map item to src id: 3641622515394424284
got link: instrument_type
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: instrument_type
WARNING: could not find map item to src id: 3631887032700034734
got link: latitude
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: latitude
WARNING: could not find map item to src id: 3632029474817689284
got link: longitude
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: longitude
WARNING: could not find map item to src id: 3634328897574112734
got link: sweep
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: sweep
WARNING: could not find map item to src id: 3643754786686253109
got link: sweep_fixed_angle
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: sweep_fixed_angle
WARNING: could not find map item to src id: 3645238800993654084
got link: sweep_group_name
creating multilink <HDF5 file “WLS.nc” (mode r+)> with title: sweep_group_name
WARNING: could not find map item to src id: 3644000426664657384
creating group /Sweep_119916
create_links: /Sweep_119916
got link: scan_file_dim
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: scan_file_dim
WARNING: could not find map item to src id: 3650311484571351834
got link: scan_file
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: scan_file
WARNING: could not find map item to src id: 3650690845721431809
got link: settings_file_dim
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: settings_file_dim
WARNING: could not find map item to src id: 3651231544372120509
got link: settings_file
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: settings_file
WARNING: could not find map item to src id: 3651545498427359109
got link: res_file_dim
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: res_file_dim
WARNING: could not find map item to src id: 3611222751203149659
got link: res_file
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: res_file
WARNING: could not find map item to src id: 3613480022720675334
got link: ray_angle_resolution
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: ray_angle_resolution
WARNING: could not find map item to src id: 3628471328858318484
got link: range_gate_length
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: range_gate_length
WARNING: could not find map item to src id: 3627715513540151484
got link: ray_accumulation_time
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: ray_accumulation_time
WARNING: could not find map item to src id: 3624147193143805359
got link: time_reference
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: time_reference
WARNING: could not find map item to src id: 3680526655406074134
got link: sweep_mode
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: sweep_mode
WARNING: could not find map item to src id: 3679451072068682634
got link: sweep_index
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: sweep_index
WARNING: could not find map item to src id: 3681840611266887534
got link: rotation_direction
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: rotation_direction
WARNING: could not find map item to src id: 3682206890997999234
got link: time
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: time
WARNING: could not find map item to src id: 3681497587391719434
got link: range
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: range
WARNING: could not find map item to src id: 3686420561396780259
got link: timestamp
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: timestamp
WARNING: could not find map item to src id: 3683407474561087584
got link: ray_index
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: ray_index
WARNING: could not find map item to src id: 3692462723469126834
got link: azimuth
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: azimuth
WARNING: could not find map item to src id: 3694891506924236559
got link: elevation
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: elevation
WARNING: could not find map item to src id: 3657548416242800859
got link: cnr
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: cnr
WARNING: could not find map item to src id: 3653052768590703684
got link: gate_index
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: gate_index
WARNING: could not find map item to src id: 3596555573557720434
got link: radial_wind_speed
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: radial_wind_speed
WARNING: could not find map item to src id: 3598792496201295459
got link: radial_wind_speed_ci
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: radial_wind_speed_ci
WARNING: could not find map item to src id: 3815032712219870634
got link: radial_wind_speed_status
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: radial_wind_speed_status
WARNING: could not find map item to src id: 3711249094598566209
got link: doppler_spectrum_width
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: doppler_spectrum_width
WARNING: could not find map item to src id: 3722750568853672884
got link: doppler_spectrum_mean_error
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: doppler_spectrum_mean_error
WARNING: could not find map item to src id: 3226027288263324009
got link: atmospherical_structures_type
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: atmospherical_structures_type
WARNING: could not find map item to src id: 3718717131338454759
got link: relative_beta
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: relative_beta
WARNING: could not find map item to src id: 3233913930410197359
got link: absolute_beta
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: absolute_beta
WARNING: could not find map item to src id: 3165387643890387009
got link: instrumental_function_x_max
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: instrumental_function_x_max
WARNING: could not find map item to src id: 3211175517261342459
got link: instrumental_function_y_average
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: instrumental_function_y_average
WARNING: could not find map item to src id: 3324685896631057584
got link: instrumental_function_amplitude
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: instrumental_function_amplitude
WARNING: could not find map item to src id: 3324278919152044584
got link: instrumental_function_half_height_width
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: instrumental_function_half_height_width
WARNING: could not find map item to src id: 3320563796165054484
got link: instrumental_function_status
creating multilink <HDF5 group “/Sweep_119916” (0 members)> with title: instrumental_function_status
WARNING: could not find map item to src id: 3319476584899691184
creating dataset /Sweep_119916/absolute_beta, shape: (120, 57), type: float64
dataset created, uuid: d-6770f047-b3306fa2-6cba-691c01-52694f, chunk_size: (120, 57)
creating dataset /Sweep_119916/atmospherical_structures_type, shape: (120, 57), type: int32
dataset created, uuid: d-6770f047-b3306fa2-bd1a-933d9d-772875, chunk_size: (120, 57)
creating dataset /Sweep_119916/azimuth, shape: (120,), type: float64
dataset created, uuid: d-6770f047-b3306fa2-4b63-dfbf47-18070e, chunk_size: (120,)
creating dataset /Sweep_119916/cnr, shape: (120, 57), type: float64
dataset created, uuid: d-6770f047-b3306fa2-bfa9-1b14ea-f50b64, chunk_size: (120, 57)
creating dataset /Sweep_119916/doppler_spectrum_mean_error, shape: (120, 57), type: float64
dataset created, uuid: d-6770f047-b3306fa2-f903-d849bc-b6756b, chunk_size: (120, 57)
creating dataset /Sweep_119916/doppler_spectrum_width, shape: (120, 57), type: float64
dataset created, uuid: d-6770f047-b3306fa2-8a64-dd36d8-dc8f0b, chunk_size: (120, 57)
creating dataset /Sweep_119916/elevation, shape: (120,), type: float64
dataset created, uuid: d-6770f047-b3306fa2-02b1-a350ad-fdd855, chunk_size: (120,)
creating dataset /Sweep_119916/gate_index, shape: (57,), type: int32
dataset created, uuid: d-6770f047-b3306fa2-b460-cc5662-0dcb05, chunk_size: (57,)
creating dataset /Sweep_119916/instrumental_function_amplitude, shape: (), type: float64
dataset created, uuid: d-6770f047-b3306fa2-b5d1-871acc-55650f, chunk_size: (1,)
creating dataset /Sweep_119916/instrumental_function_half_height_width, shape: (), type: float64
dataset created, uuid: d-6770f047-b3306fa2-6dc7-cd7256-532ec6, chunk_size: (1,)
creating dataset /Sweep_119916/instrumental_function_status, shape: (), type: uint8
dataset created, uuid: d-6770f047-b3306fa2-82c2-27aa3a-fa3611, chunk_size: (1,)
creating dataset /Sweep_119916/instrumental_function_x_max, shape: (), type: float64
dataset created, uuid: d-6770f047-b3306fa2-69eb-f7ae23-1c4349, chunk_size: (1,)
creating dataset /Sweep_119916/instrumental_function_y_average, shape: (), type: float64
dataset created, uuid: d-6770f047-b3306fa2-4edc-b7a398-2b6593, chunk_size: (1,)
creating dataset /Sweep_119916/radial_wind_speed, shape: (120, 57), type: float64
dataset created, uuid: d-6770f047-b3306fa2-3ea8-59d562-09b1c0, chunk_size: (120, 57)
creating dataset /Sweep_119916/radial_wind_speed_ci, shape: (120, 57), type: float64
dataset created, uuid: d-6770f047-b3306fa2-d5b4-c10cad-160798, chunk_size: (120, 57)
creating dataset /Sweep_119916/radial_wind_speed_status, shape: (120, 57), type: uint8
dataset created, uuid: d-6770f047-b3306fa2-bb1c-8ac93c-067bf5, chunk_size: (120, 57)
creating dataset /Sweep_119916/range, shape: (57,), type: int32
dataset created, uuid: d-6770f047-b3306fa2-e2c3-c3e796-863dca, chunk_size: (57,)
creating dataset /Sweep_119916/range_gate_length, shape: (), type: float64
dataset created, uuid: d-6770f047-b3306fa2-59ce-bb2c23-56d184, chunk_size: (1,)
creating dataset /Sweep_119916/ray_accumulation_time, shape: (), type: int32
dataset created, uuid: d-6770f047-b3306fa2-c86f-f91354-4a615c, chunk_size: (1,)
creating dataset /Sweep_119916/ray_angle_resolution, shape: (), type: float64
dataset created, uuid: d-6770f047-b3306fa2-a184-1e65eb-561142, chunk_size: (1,)
creating dataset /Sweep_119916/ray_index, shape: (120,), type: float64
dataset created, uuid: d-6770f047-b3306fa2-9f6d-78a3a0-26b2d4, chunk_size: (120,)
creating dataset /Sweep_119916/relative_beta, shape: (120, 57), type: float64
dataset created, uuid: d-6770f047-b3306fa2-e621-44c986-b67799, chunk_size: (120, 57)
creating dataset /Sweep_119916/res_file, shape: (5808,), type: |S1
dataset created, uuid: d-6770f047-b3306fa2-aed1-6580eb-ad3044, chunk_size: (5808,)
creating dataset /Sweep_119916/res_file_dim, shape: (5808,), type: >f4
dataset created, uuid: d-6770f047-b3306fa2-c3f1-7ebd4b-f23897, chunk_size: (5808,)
creating dataset /Sweep_119916/rotation_direction, shape: (), type: object
dataset created, uuid: d-6770f047-b3306fa2-d4c4-32b981-85e098, chunk_size: (1,)
malloc_consolidate(): invalid chunk size
Aborted (core dumped)
osboxes@osboxes:~$