···
--
Generating done
CMake Warning:
Manually-specified variables were not
used by the project:
SZIP_LIBRARY
ZLIB_LIBRARY
And finally that at
build time :
[ 36%] Linking C shared library
../bin/libhdf5.so
/USR/BIN/LD.BFD.REAL: CAN'T FIND
-LZLIB_EXPORT_LIBRARIES
/USR/BIN/LD.BFD.REAL: CAN'T FIND
-LSZIP_EXPORT_LIBRARIES
Now when I do that :
export
CMAKE_PREFIX_PATH="$1:$CMAKE_PREFIX_PATH" # SUPPRESS
$1/SHARE/CMAKE
export
CMAKE_MODULE_PATH="$1/share/cmake:$CMAKE_MODULE_PATH"
export
CMAKE_INCLUDE_PATH="$1/include:$CMAKE_INCLUDE_PATH"
export
CMAKE_LIBRARY_PATH="$1/lib:$CMAKE_LIBRARY_PATH"
export
CMAKE_PROGRAM_PATH="$1/bin:$CMAKE_PROGRAM_PATH"
cmake
-DCMAKE_INSTALL_PREFIX:PATH=$1 -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo
-DBUILD_SHARED_LIBS:BOOL=ON
-DHDF5_BUILD_HL_LIB:BOOL=ON
-DHDF5_BUILD_TOOLS:BOOL=ON -DHDF_ENABLE_LARGE_FILE:BOOL=ON
-DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON -DZLIB_INCLUDE_DIR:PATH="$1/include"
-DZLIB_LIBRARY:FILEPATH="$1/lib/libz.so"
-DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON -DSZIP_INCLUDE_DIR:PATH="$1/include"
-DSZIP_LIBRARY:FILEPATH="$1/lib/libszip.so" ..
if [ $? -ne 0 ]; then
exit 1; fi
I get that in configure log message :
CMake Warning at
CMakeFilters.cmake:43 (find_package):
Could NOT find a package
configuration file provided by "ZLIB" with any of
the following names:
ZLIBConfig.cmake
zlib-config.cmake
ADD THE INSTALLATION PREFIX OF
"ZLIB" TO CMAKE_PREFIX_PATH OR SET
"ZLIB_DIR" to a directory containing
one of the above files. If "ZLIB"
provides a separate development
package or SDK, be sure it has been
installed.
-- Filter ZLIB is
ON
CMake Warning at CMakeFilters.cmake:90 (find_package):
Could NOT
find a package configuration file provided by "SZIP" with any of
the
following names:
SZIPConfig.cmake
szip-config.cmake
ADD THE
INSTALLATION PREFIX OF "SZIP" TO CMAKE_PREFIX_PATH OR SET
"SZIP_DIR" to
a directory containing one of the above files. If "SZIP"
provides a
separate development package or SDK, be sure it has been
installed.
--
Filter SZIP is ON
But HDF5 COMPILES FINALLY ?!
[ 0%] Built target
H5detect
[ 0%] Built target H5make_libsettings
[ 36%] Built target
hdf5
...
[ 99%] Built target perf_meta
[100%] Built target
zip_perf
Note : this is because of the error messages (configure) that
I added $1/share/cmake to CMAKE_PREFIX_PATH
Can somebody explain me
that ?!... This looks like black magic to me...
Franck
Note : my
understanding is that $1/share/cmake should NOT be added to
CMAKE_PREFIX_PATH.
~> man cmake
CMAKE_PREFIX_PATH
Path used for
searching by FIND_XXX(), with appropriate suffixes added.
Specifies a
path which will be used by the FIND_XXX() commands. IT CONTAINS THE
"BASE" DIRECTORIES, the FIND_XXX() commands append appropriate
subdirectories
to the base directories. So FIND_PROGRAM() ADDS /BIN to
each of the directories in the path, FIND_LIBRARY() APPENDS /LIB to each
of the directories, and
FIND_PATH() and FIND_FILE() append /include .
By default it is empty, it is intended to be set by the project. See
also CMAKE_SYSTEM_PREFIX_PATH,
CMAKE_INCLUDE_PATH, CMAKE_LIBRARY_PATH,
CMAKE_PROGRAM_PATH.
Le 2015-10-12 18:57, Allen Byrne a écrit :
Franck,
You are correct that the standard zlib does not provide
cmake compiled
binaries. We created the tarballs so that we could
build the szip/zlib
libararies with the same options as the
library.
We do test with the "point to the system installed libs"
option -
AFAIK, there
are no reported problems.
Well, the
options look correct. The ZSIP/ZLIB_EXPORT_LIBRARIES in the link
line
is very strange. Where could that be coming from instead of the actual
name you supplied.
It is possible that something got confused in
the cmake files -
because those
are names of variables used within
our cmake-ified szip/zlib tarballs.
Allen
On Monday, October 12, 2015 06:22:26 PM houssen wrote:
Hello,
My understanding is
that HDF5_ALLOW_EXTERNAL_SUPPORT should not be used
(and defaults to
NO) according to the doc : I tried to set it anyway.
Also, on Ubuntu
when I "sudo apt-get install" zlib, it seems I get an
autotools
install, so CMake does not find the zlib install (missing
Find*.cmake): this is why I tried to build from source and install
ZLib
/ SZip (I use ZLIB / SZIP tarballs provided by
www.hdfgroup.org/ftp/HDF5/releases/... as they have been patched to
create Find*.cmake files at install time).
My last try (called
within a bash script where $1 is a path to the
final install where
libz and libszip are already installed) :
export
CMAKE_PREFIX_PATH="$1:$1/share/cmake:$CMAKE_PREFIX_PATH"
export
CMAKE_MODULE_PATH="$1/share/cmake:$CMAKE_MODULE_PATH"
export
CMAKE_INCLUDE_PATH="$1/include:$CMAKE_INCLUDE_PATH"
export
CMAKE_LIBRARY_PATH="$1/lib:$CMAKE_LIBRARY_PATH"
export
CMAKE_PROGRAM_PATH="$1/bin:$CMAKE_PROGRAM_PATH"
cmake
-DCMAKE_INSTALL_PREFIX:PATH=$1
-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo -DBUILD_SHARED_LIBS:BOOL=ON
-DHDF5_BUILD_HL_LIB:BOOL=ON -DHDF5_BUILD_TOOLS:BOOL=ON
-DHDF_ENABLE_LARGE_FILE:BOOL=ON
-DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING="NO"
-DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON
-DZLIB_INCLUDE_DIR:PATH="$1/include"
-DZLIB_LIBRARY:FILEPATH="$1/lib/libz.so"
-DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON
-DSZIP_INCLUDE_DIR:PATH="$1/include"
-DSZIP_LIBRARY:FILEPATH="$1/lib/libszip.so" ..
Note : I use now
-DZLIB_LIBRARY:FILEPATH / -DSZIP_LIBRARY:FILEPATH
according to the
doc.
Gives me this :
[ 36%] Linking C shared library
../bin/libhdf5.so
/usr/bin/ld.bfd.real: can't find
-lZLIB_EXPORT_LIBRARIES
/usr/bin/ld.bfd.real: can't find
-lSZIP_EXPORT_LIBRARIES
/usr/bin/ld.bfd.real: can't find
-lZLIB_EXPORT_LIBRARIES
/usr/bin/ld.bfd.real: can't find
-lSZIP_EXPORT_LIBRARIES
I miss something but can't figure our what
?... I guess options are
upsetting each other...
Franck
Le 2015-10-12 15:56, Allen Byrne a écrit :
> Franck,
>
>
HDF5_ALLOW_EXTERNAL_SUPPORT is not a BOOL, it is a STRING "NO,
>
>
SVN, TGZ".
>
> Allen
>
> On Sunday, October 11, 2015 06:23:49 PM houssen wrote:
>> Hello,
>>
>> How to build HDF5
(1.8.15) with ZLib and SZIP (on Ubuntu-14.04) ?
>>
>> With this
(called within a bash script where $1 is a path to the
>> final
>>
install where libz and libszip are already installed) :
>> export
CMAKE_PREFIX_PATH="$1/share/cmake:$CMAKE_PREFIX_PATH"
>> export
CMAKE_MODULE_PATH="$1/share/cmake:$CMAKE_MODULE_PATH"
>> export
CMAKE_INCLUDE_PATH="$1/include:$CMAKE_INCLUDE_PATH"
>> export
CMAKE_LIBRARY_PATH="$1/lib:$CMAKE_LIBRARY_PATH"
>> export
CMAKE_PROGRAM_PATH="$1/bin:$CMAKE_PROGRAM_PATH"
>> cmake
-DCMAKE_INSTALL_PREFIX:PATH=$1
>>
-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo -DBUILD_SHARED_LIBS:BOOL=ON
>>
>>
>> -DHDF5_BUILD_HL_LIB:BOOL=ON
-DHDF5_BUILD_TOOLS:BOOL=ON
>>
>>
-DHDF_ENABLE_LARGE_FILE:BOOL=ON
>>
>>
>>
>>
-DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON
>>
>>
-DZLIB_INCLUDE_DIR:PATH="$1/include"
>>
-DZLIB_LIBRARY:PATH="$1/lib/libz.so"
>>
>>
>>
>>
-DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON
>>
>>
-DSZIP_INCLUDE_DIR:PATH="$1/include"
>>
-DSZIP_LIBRARY_RELEASE:PATH="$1/lib/libszip.so"
>>
-DHDF5_ENABLE_SZIP_ENCODING:BOOL=ON ..
>> I got this :
>> [ 0%]
Linking C shared library ../bin/libhdf5.so
>> /usr/bin/ld.bfd.real:
can't find -lZLIB_EXPORT_LIBRARIES
>> /usr/bin/ld.bfd.real: can't
find -lSZIP_EXPORT_LIBRARIES
>> /usr/bin/ld.bfd.real: can't find
-lZLIB_EXPORT_LIBRARIES
>> /usr/bin/ld.bfd.real: can't find
-lSZIP_EXPORT_LIBRARIES
>> collect2: error: ld returned 1 exit
status
>>
>> With this :
>> cmake
-DCMAKE_INSTALL_PREFIX:PATH=$1
>>
-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo -DBUILD_SHARED_LIBS:BOOL=ON
>>
>>
>> -DHDF5_BUILD_HL_LIB:BOOL=ON
-DHDF5_BUILD_TOOLS:BOOL=ON
>>
>>
-DHDF_ENABLE_LARGE_FILE:BOOL=ON
>>
>>
>>
>>
-DHDF5_ALLOW_EXTERNAL_SUPPORT:BOOL=ON
>>
>>
-DZLIB_USE_EXTERNAL:BOOL=ON
>> -DSZIP_USE_EXTERNAL:BOOL=ON
>>
>>
>> -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON
>>
>>
-DZLIB_URL:PATH="https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.15/s
rc/ ZLib.tar.gz"
>>
>> -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON
>> -DHDF5_ENABLE_SZIP_ENCODING:BOOL=ON
>>
>>
-DSZIP_URL:PATH="https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.15/s
rc/ SZip.tar.gz" ..
>> I got this :
>>
>> CMake Error at
CMakeFilters.cmake:66 (message):
>> ZLib is Required for ZLib support
in HDF5
>>
>> Franck
>>
>>
>>
_______________________________________________
>> Hdf-forum is for
HDF software users discussion.
>> Hdf-forum@lists.hdfgroup.org
>>
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
_______________________________________________
Hdf-forum is for HDF
software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
