I finally found this community and installed the tols on my mac. I also found some primer on how to extract specific content from my data.
I would now like to extract the value of a single field but do not find my way further than the following command which returns a whole block of data.
h5dump -a UniqueGlobalKey/context_tags/sequencing_kit GXB01104_20181122_FAH86318_GA10000_mux_scan_metagenome925_34309_read_5_ch_477_strand.fast5
HDF5 "GXB01104_20181122_FAH86318_GA10000_mux_scan_metagenome925_34309_read_5_ch_477_strand.fast5" {
ATTRIBUTE "sequencing_kit" {
DATATYPE H5T_STRING {
STRSIZE 11;
STRPAD H5T_STR_NULLTERM;
CSET H5T_CSET_ASCII;
CTYPE H5T_C_S1;
}
DATASPACE SCALAR
DATA {
(0): "sqk-rad004"
}
}
}
What I would like to get returned is only the value: “sqk-rad004”
Could someone please point me to the right command for that (under terminal)
I will use this value and other similar ones in bash scripts
Thanks in advance
Stephane