Hello,
I am trying to install HDFview on a linux system. When I install it, and
then the following command on my command line
$hdfview.sh
the HDFview 2.9 window does open, but on the command line I get the
following messages:
···
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[pradeep@83 ~]$hdfview.sh
java.lang.UnsatisfiedLinkError: no jhdf5 in java.library.path
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1698)
at java.lang.Runtime.loadLibrary0(Runtime.java:840)
at java.lang.System.loadLibrary(System.java:1047)
at ncsa.hdf.hdf5lib.H5.loadH5Lib(H5.java:347)
at ncsa.hdf.hdf5lib.H5.<clinit>(H5.java:274)
at ncsa.hdf.hdf5lib.HDF5Constants.<clinit>(HDF5Constants.java:28)
at ncsa.hdf.object.h5.H5File.<init>(H5File.java:99)
at ncsa.hdf.object.h5.H5File.<init>(H5File.java:132)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:532)
at java.lang.Class.newInstance0(Class.java:372)
at java.lang.Class.newInstance(Class.java:325)
at ncsa.hdf.object.FileFormat.<clinit>(FileFormat.java:229)
at ncsa.hdf.view.ViewProperties.load(ViewProperties.java:1072)
at ncsa.hdf.view.HDFView.<init>(HDFView.java:233)
at ncsa.hdf.view.HDFView$1.run(HDFView.java:2218)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:226)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:602)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)
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How can I get rid of it?
I have the following environment variables declared in my .bashrc file:
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export JAVAPATH=/usr/bin
export HDFVIEW_HOME=/usr/local/hdf5/hdf-java/
export PATH=/usr/local/hdf5/bin/:/usr/local/hdf5/hdf-java/bin/:$PATH
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And this is the structure of my /usr/local/hdf5 folder:
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[pradeep@83 hdf5]$ls *
bin:
gif2h5* h5cc* h5debug* h5dump* h5jam* h5mkgrp* h5redeploy*
h5repart* h5unjam*
h52gif* h5copy* h5diff* h5import* h5ls* h5perf_serial* h5repack*
h5stat*
hdf-java:
bin/ lib/ UsersGuide/
include:
H5ACpublic.h H5DSpublic.h H5FDfamily.h H5FDmulti.h H5Gpublic.h
H5MMpublic.h
H5pubconf.h H5Tpublic.h
H5api_adpt.h H5Epubgen.h H5FDlog.h H5FDpublic.h H5IMpublic.h H5Opublic.h
H5public.h H5version.h
H5Apublic.h H5Epublic.h H5FDmpi.h H5FDsec2.h H5Ipublic.h H5overflow.h
H5Rpublic.h H5Zpublic.h
H5Cpublic.h H5FDcore.h H5FDmpio.h H5FDstdio.h H5Lpublic.h H5Ppublic.h
H5Spublic.h hdf5.h
H5Dpublic.h H5FDdirect.h H5FDmpiposix.h H5Fpublic.h H5LTpublic.h
H5PTpublic.h
H5TBpublic.h hdf5_hl.h
lib:
libhdf5.a libhdf5_hl.la* libhdf5_hl.so.7@ libhdf5.la*
libhdf5.so@ libhdf5.so.7.0.4*
libhdf5_hl.a libhdf5_hl.so@ libhdf5_hl.so.7.0.4* libhdf5.settings
libhdf5.so.7@
share:
hdf5_examples/
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And the structure of my /usr/local/hdf5/hdf-java folder:
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[pradeep@83 hdf-java]$ls *
bin:
hdfview.sh*
lib:
ext/ jhdf4obj.jar jhdf5obj.jar jhdfobj.jar junit.jar netcdf.jar*
fits.jar* jhdf5.jar jhdf.jar jhdfview.jar macosx/
UsersGuide:
images/ RELEASE.txt ug02start.html* ug04treeview.html*
ug06imageview.html*
index.html* ug01introduction.html* ug03objects.html* ug05spreadsheet.html*
ug07textview.html*
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Thank you,
Pradeep