Hello All:
I am getting a failure when testing what appears otherwise to be a
successful build of a Parallel PGI Build of HDF5 1.18.13 at the ³make
check² phase of building HDF5.
(Note that this error also happens when I build without MPICH and
--enable-parallel enabled and without ‹enable-fortran).
Details:
OS: Fedora 20 64-bit
HDF5 Version 1.18.13
PGI Version 14.6 (with the MPICH 3.0.4 executables and libraries that come
with PGI, not a separate MPICH build)
Configure optons: ./configure --prefix=/usr/local --enable-parallel
--enable-parallel-tests --enable-fortran
FC, F90 and F77 = mpif90, CC = mpicc, CXX = mpicxx
The build happens without incident. But when I test, I get the following
error with make check:
% make check
Making check in src
make[1]: Entering directory `/usr/local/hdf5-1.8.13/src'
make check-TESTS
make[2]: Entering directory `/usr/local/hdf5-1.8.13/src'
make[3]: Entering directory `/usr/local/hdf5-1.8.13/src'
make[4]: Entering directory `/usr/local/hdf5-1.8.13/src'
make[4]: Nothing to be done for `_exec_check-s'.
make[4]: Leaving directory `/usr/local/hdf5-1.8.13/src'
make[3]: Leaving directory `/usr/local/hdf5-1.8.13/src'
make[3]: Entering directory `/usr/local/hdf5-1.8.13/src'
make[3]: Leaving directory `/usr/local/hdf5-1.8.13/src'
make[2]: Leaving directory `/usr/local/hdf5-1.8.13/src'
make[1]: Leaving directory `/usr/local/hdf5-1.8.13/src'
Making check in test
make[1]: Entering directory `/usr/local/hdf5-1.8.13/test'
make testhdf5 lheap ohdr stab gheap cache cache_api pool accum hyperslab
istore bittests dt_arith dtypes dsets cmpd_dset filter_fail extend
external efc objcopy links unlink big mtime fillval mount flush1 flush2
app_ref enum set_extent ttsafe getname vfd ntypes dangle dtransform
reserved cross_read freespace mf btree2 fheap file_image unregister
error_test err_compat tcheck_version testmeta links_env testerror.sh
testlibinfo.sh testcheck_version.sh testlinks_env.sh
make[2]: Entering directory `/usr/local/hdf5-1.8.13/test'
make[2]: `testhdf5' is up to date.
make[2]: `lheap' is up to date.
make[2]: `ohdr' is up to date.
make[2]: `stab' is up to date.
make[2]: `gheap' is up to date.
make[2]: `cache' is up to date.
make[2]: `cache_api' is up to date.
make[2]: `pool' is up to date.
make[2]: `accum' is up to date.
make[2]: `hyperslab' is up to date.
make[2]: `istore' is up to date.
make[2]: `bittests' is up to date.
make[2]: `dt_arith' is up to date.
make[2]: `dtypes' is up to date.
make[2]: `dsets' is up to date.
make[2]: `cmpd_dset' is up to date.
make[2]: `filter_fail' is up to date.
make[2]: `extend' is up to date.
make[2]: `external' is up to date.
make[2]: `efc' is up to date.
make[2]: `objcopy' is up to date.
make[2]: `links' is up to date.
make[2]: `unlink' is up to date.
make[2]: `big' is up to date.
make[2]: `mtime' is up to date.
make[2]: `fillval' is up to date.
make[2]: `mount' is up to date.
make[2]: `flush1' is up to date.
make[2]: `flush2' is up to date.
make[2]: `app_ref' is up to date.
make[2]: `enum' is up to date.
make[2]: `set_extent' is up to date.
make[2]: `ttsafe' is up to date.
make[2]: `getname' is up to date.
make[2]: `vfd' is up to date.
make[2]: `ntypes' is up to date.
make[2]: `dangle' is up to date.
make[2]: `dtransform' is up to date.
make[2]: `reserved' is up to date.
make[2]: `cross_read' is up to date.
make[2]: `freespace' is up to date.
make[2]: `mf' is up to date.
make[2]: `btree2' is up to date.
make[2]: `fheap' is up to date.
make[2]: `file_image' is up to date.
make[2]: `unregister' is up to date.
make[2]: `error_test' is up to date.
make[2]: `err_compat' is up to date.
make[2]: `tcheck_version' is up to date.
make[2]: `testmeta' is up to date.
make[2]: `links_env' is up to date.
make[2]: `testerror.sh' is up to date.
make[2]: `testlibinfo.sh' is up to date.
make[2]: `testcheck_version.sh' is up to date.
make[2]: `testlinks_env.sh' is up to date.
make[2]: Leaving directory `/usr/local/hdf5-1.8.13/test'
make check-TESTS
make[2]: Entering directory `/usr/local/hdf5-1.8.13/test'
make[3]: Entering directory `/usr/local/hdf5-1.8.13/test'
===Serial tests in test begin Sun Jul 13 20:29:11 UTC 2014===
make[4]: Entering directory `/usr/local/hdf5-1.8.13/test'
···
============================
No need to test testhdf5 again.
No need to test lheap again.
No need to test ohdr again.
No need to test stab again.
No need to test gheap again.
No need to test cache again.
No need to test cache_api again.
No need to test pool again.
No need to test accum again.
No need to test hyperslab again.
No need to test istore again.
No need to test bittests again.
No need to test dt_arith again.
No need to test dtypes again.
No need to test dsets again.
No need to test cmpd_dset again.
No need to test filter_fail again.
No need to test extend again.
No need to test external again.
No need to test efc again.
No need to test objcopy again.
No need to test links again.
No need to test unlink again.
No need to test big again.
No need to test mtime again.
No need to test fillval again.
No need to test mount again.
No need to test flush1 again.
No need to test flush2 again.
No need to test app_ref again.
No need to test enum again.
No need to test set_extent again.
No need to test ttsafe again.
No need to test getname again.
No need to test vfd again.
No need to test ntypes again.
No need to test dangle again.
No need to test dtransform again.
No need to test reserved again.
No need to test cross_read again.
No need to test freespace again.
No need to test mf again.
No need to test btree2 again.
No need to test fheap again.
No need to test file_image again.
No need to test unregister again.
No need to test testerror.sh again.
============================
No need to test testlibinfo.sh again.
============================
Testing testcheck_version.sh
testcheck_version.sh Test Log
Tests for the H5check_version function.
Note that abort messages may appear due to the expected termination
of the program when it is tested with mis-matched version numnbers.
tcheck_version
PASSED
tcheck_version -tM
*FAILED*
Expected exit code (6) differs from actual code (0)
tcheck_version -tm
*FAILED*
Expected exit code (6) differs from actual code (0)
tcheck_version -tr
*FAILED*
Expected exit code (6) differs from actual code (0)
env HDF5_DISABLE_VERSION_CHECK= tcheck_version
PASSED
env HDF5_DISABLE_VERSION_CHECK= tcheck_version -tM
PASSED
env HDF5_DISABLE_VERSION_CHECK= tcheck_version -tm
PASSED
env HDF5_DISABLE_VERSION_CHECK= tcheck_version -tr
PASSED
env HDF5_DISABLE_VERSION_CHECK=-1 tcheck_version
PASSED
env HDF5_DISABLE_VERSION_CHECK=-1 tcheck_version -tM
PASSED
env HDF5_DISABLE_VERSION_CHECK=-1 tcheck_version -tm
PASSED
env HDF5_DISABLE_VERSION_CHECK=-1 tcheck_version -tr
PASSED
env HDF5_DISABLE_VERSION_CHECK=0 tcheck_version
PASSED
env HDF5_DISABLE_VERSION_CHECK=0 tcheck_version -tM
PASSED
env HDF5_DISABLE_VERSION_CHECK=0 tcheck_version -tm
PASSED
env HDF5_DISABLE_VERSION_CHECK=0 tcheck_version -tr
PASSED
env HDF5_DISABLE_VERSION_CHECK=1 tcheck_version
PASSED
env HDF5_DISABLE_VERSION_CHECK=1 tcheck_version -tM
PASSED
env HDF5_DISABLE_VERSION_CHECK=1 tcheck_version -tm
PASSED
env HDF5_DISABLE_VERSION_CHECK=1 tcheck_version -tr
PASSED
env HDF5_DISABLE_VERSION_CHECK=2 tcheck_version
PASSED
env HDF5_DISABLE_VERSION_CHECK=2 tcheck_version -tM
PASSED
env HDF5_DISABLE_VERSION_CHECK=2 tcheck_version -tm
PASSED
env HDF5_DISABLE_VERSION_CHECK=2 tcheck_version -tr
PASSED
env HDF5_DISABLE_VERSION_CHECK=3 tcheck_version
PASSED
env HDF5_DISABLE_VERSION_CHECK=3 tcheck_version -tM
PASSED
env HDF5_DISABLE_VERSION_CHECK=3 tcheck_version -tm
PASSED
env HDF5_DISABLE_VERSION_CHECK=3 tcheck_version -tr
PASSED
***3 errors encountered***
0.03user 0.08system 0:00.26elapsed 46%CPU (0avgtext+0avgdata
3632maxresident)k
0inputs+360outputs (0major+45451minor)pagefaults 0swaps
make[4]: *** [testcheck_version.sh.chkexe_] Error 1
make[4]: Leaving directory `/usr/local/hdf5-1.8.13/test'
make[3]: *** [build-check-s] Error 2
make[3]: Leaving directory `/usr/local/hdf5-1.8.13/test'
make[2]: *** [test] Error 2
make[2]: Leaving directory `/usr/local/hdf5-1.8.13/test'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory `/usr/local/hdf5-1.8.13/test'
make: *** [check-recursive] Error 1
%
Ideas?
Thanks MuchŠ
Bill Capehart <William.Capehart@sdsmt.edu> Associate Professor
Atmospheric & Environmental Sciences Program Coordinator
213 Mineral Industries Building Hydrometeorology
South Dakota School of Mines and Technology Skype: wcapehart
501 East Saint Joseph Street Ph: +1-605-394-1994
Rapid City, SD 57701-3995 Mobile: +1-605-484-5692
=================== http://capehart.sdsmt.edu ==================