Hi,
I compiled several versions of HDF5, but no matter which version I want to use it keeps giving the following error:
"error while loading shared libraries: libhdf5.so.8: cannot open shared object file: No such file or directory"
I guess this has something to do with the HDF5 configuration, but I couldn't figure out so far what might be the problem.
Could You help me out?
Attached the config.log and the libhdf5.settings, if You need more info, let me know!
Cheers,
Joseph
config.log (1.12 MB)
libhdf5.settings (3.64 KB)
Dear Joseph,
It is not clear from the provided information if you have set the enviroment-variable LD_LIBRARY_PATH (correctly).
Assuming that you are using the bash-shell, try:
export LD_LIBRARY_PATH=/users/jkobori/hdf5/lib
And try to run your executable.
Your executable is also outdated, hdf5-1.8.15-patch1, provides libhdf5.so.10.0.1
Thus you have to recompile your executables against the installed HDF5 libraries
Greetings, Richard
···
On 07/09/15 14:34, K�bori J�zsef wrote:
Hi,
I compiled several versions of HDF5, but no matter which version I want to use it keeps giving the following error:
"error while loading shared libraries: libhdf5.so.8: cannot open shared object file: No such file or directory"
I guess this has something to do with the HDF5 configuration, but I couldn't figure out so far what might be the problem.
Could You help me out?
Attached the config.log and the libhdf5.settings, if You need more info, let me know!
Cheers,
Joseph
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
Dear Richard,
thank You for the help! However, yesterday I tried what You wrote (export ...)
and for some reason it worked. It seems that the configuration file of my program which needs the hdf5 libraries was misconfigured, I must have overlooked the mistake.
Best regards,
Joseph
Id�zet (Richard van Hees <r.m.van.hees@sron.nl>):
···
Dear Joseph,
It is not clear from the provided information if you have set the enviroment-variable LD_LIBRARY_PATH (correctly).
Assuming that you are using the bash-shell, try:
export LD_LIBRARY_PATH=/users/jkobori/hdf5/lib
And try to run your executable.
Your executable is also outdated, hdf5-1.8.15-patch1, provides libhdf5.so.10.0.1
Thus you have to recompile your executables against the installed HDF5 libraries
Greetings, Richard
On 07/09/15 14:34, K�bori J�zsef wrote:
Hi,
I compiled several versions of HDF5, but no matter which version I want to use it keeps giving the following error:
"error while loading shared libraries: libhdf5.so.8: cannot open shared object file: No such file or directory"
I guess this has something to do with the HDF5 configuration, but I couldn't figure out so far what might be the problem.
Could You help me out?
Attached the config.log and the libhdf5.settings, if You need more info, let me know!
Cheers,
Joseph
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
-------------------------------------------
J�zsef K�bori
PhD Student - Particle Physics and Astronomy Program
Room: Building North, Number 5.91, Phone: +36 30-266-5673
E�tv�s Lor�nd University
1117 Budapest, P�zm�ny P. stny. 1/A
