Hdf5 compilation error

Hi,

I am trying to compile hdf5 (hdf5-1.8.6) with zlib library (zlib-1.2.5). The compiler in my

64 bit ubuntu machine (14.04) is gfortran/gcc version 4.8.2. I got the following error while giving 'make'... Please help me.. I have attached log file

make[2]: *** [h5tools_utils.lo] Error 1
make[2]: Leaving directory `/home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/tools/lib'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/tools'
make: *** [all-recursive] Error 1

config.log (199 KB)

Hui,

You should put the actual compilation error, not the make errors that
appeared due to the original error.

Matthieu

···

2014-10-02 8:46 GMT+02:00 Naseema Beegum Shyju <Nshyju@masdar.ac.ae>:

Hi,

I am trying to compile hdf5 (hdf5-1.8.6) with zlib library (zlib-1.2.5). The
compiler in my

64 bit ubuntu machine (14.04) is gfortran/gcc version 4.8.2. I got the
following error while giving 'make'... Please help me.. I have attached log
file

make[2]: *** [h5tools_utils.lo] Error 1
make[2]: Leaving directory
`/home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/tools/lib'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/tools'
make: *** [all-recursive] Error 1

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Thank you.. Please see the log file..

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by HDF5 configure 1.8.6, which was
generated by GNU Autoconf 2.67. Invocation command line was

  $ ./configure --with-zlib=/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib --prefix=/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/hdf5

## --------- ##
## Platform. ##
## --------- ##

hostname = recrema-Precision-T7610
uname -m = x86_64
uname -r = 3.13.0-36-generic
uname -s = Linux
uname -v = #63-Ubuntu SMP Wed Sep 3 21:30:07 UTC 2014

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/local/cuda-6.5/bin
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/local/games

## ----------- ##
## Core tests. ##
## ----------- ##

configure:3191: checking for a BSD-compatible install
configure:3259: result: /usr/bin/install -c
configure:3270: checking whether build environment is sane
configure:3320: result: yes
configure:3461: checking for a thread-safe mkdir -p
configure:3500: result: /bin/mkdir -p
configure:3513: checking for gawk
configure:3529: found /usr/bin/gawk
configure:3540: result: gawk
configure:3551: checking whether make sets $(MAKE)
configure:3573: result: yes
configure:3655: checking whether to enable maintainer-specific portions of Makefiles
configure:3664: result: no
configure:3691: checking build system type
configure:3705: result: x86_64-unknown-linux-gnu
configure:3725: checking host system type
configure:3738: result: x86_64-unknown-linux-gnu
configure:3796: checking shell variables initial values
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as_lineno_1a=433
as_lineno_2=434
as_lineno_2a=434
as_ln_s='ln -s'
as_me=configure
as_mkdir_p='mkdir -p "$as_dir"'
as_myself=./configure
as_nl='
'
as_save_IFS='
'
as_test_x='test -x'
as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_unset=as_fn_unset
as_var=MAILPATH
bindir='${exec_prefix}/bin'
build=x86_64-unknown-linux-gnu
build_cpu=x86_64
build_os=linux-gnu
build_vendor=unknown
cache_file=/dev/null
cross_compiling=no
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix=NONE
host=x86_64-unknown-linux-gnu
host_cpu=x86_64
host_os=linux-gnu
host_vendor=unknown
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
no_create=
no_recursion=
oldincludedir=/usr/include
pdfdir='${docdir}'
prefix=/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/hdf5
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
psdir='${docdir}'
saved_user_CFLAGS=-O0
saved_user_CPPFLAGS=
saved_user_CXXFLAGS=
saved_user_FCFLAGS=
saved_user_LDFLAGS=
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
silent=
site=
srcdir=.
subdirs=
sysconfdir='${prefix}/etc'
target=
verbose=
with_zlib=/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib
x_includes=NONE
x_libraries=NONE
configure:3799: result: done
configure:3826: checking if basename works
configure:3832: result: yes
configure:3836: checking if xargs works
configure:3842: result: yes
configure:3846: checking for cached host
configure:3853: result: none
configure:3908: checking for config x86_64-unknown-linux-gnu
configure:3916: result: no
configure:3908: checking for config x86_64-unknown-linux-gnu
configure:3916: result: no
configure:3908: checking for config unknown-linux-gnu
configure:3916: result: no
configure:3908: checking for config unknown-linux-gnu
configure:3916: result: no
configure:3908: checking for config x86_64-linux-gnu
configure:3916: result: no
configure:3908: checking for config x86_64-linux-gnu
configure:3916: result: no
configure:3908: checking for config x86_64-unknown
configure:3916: result: no
configure:3908: checking for config linux-gnu
configure:3912: result: found
configure:3927: checking for config ./config/site-specific/host-recrema-Precision-T7610
configure:3935: result: no
configure:4000: checking for gcc
configure:4027: result: gcc
configure:4256: checking for C compiler version
configure:4265: gcc --version >&5
gcc (Ubuntu 4.8.2-19ubuntu1) 4.8.2
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4276: $? = 0
configure:4265: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1)
configure:4276: $? = 0
configure:4265: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4276: $? = 4
configure:4265: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:4276: $? = 4
configure:4296: checking whether the C compiler works
configure:4318: gcc -O0 conftest.c >&5
configure:4322: $? = 0
configure:4370: result: yes
configure:4373: checking for C compiler default output file name
configure:4375: result: a.out
configure:4381: checking for suffix of executables
configure:4388: gcc -o conftest -O0 conftest.c >&5
configure:4392: $? = 0
configure:4414: result:
configure:4436: checking whether we are cross compiling
configure:4444: gcc -o conftest -O0 conftest.c >&5
configure:4448: $? = 0
configure:4455: ./conftest
configure:4459: $? = 0
configure:4474: result: no
configure:4479: checking for suffix of object files
configure:4501: gcc -c -O0 conftest.c >&5
configure:4505: $? = 0
configure:4526: result: o
configure:4530: checking whether we are using the GNU C compiler
configure:4549: gcc -c -O0 conftest.c >&5
configure:4549: $? = 0
configure:4558: result: yes
configure:4567: checking whether gcc accepts -g
configure:4587: gcc -c -g conftest.c >&5
configure:4587: $? = 0
configure:4628: result: yes
configure:4645: checking for gcc option to accept ISO C89
configure:4709: gcc -c -O0 conftest.c >&5
configure:4709: $? = 0
configure:4722: result: none needed
configure:4753: checking for style of include used by make
configure:4781: result: GNU
configure:4806: checking dependency style of gcc
configure:4916: result: gcc3
configure:4934: checking if Fortran interface enabled
configure:6391: checking for C++ compiler version
configure:6400: g++ --version >&5
g++ (Ubuntu 4.8.2-19ubuntu1) 4.8.2
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6411: $? = 0
configure:6400: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1)
configure:6411: $? = 0
configure:6400: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:6411: $? = 4
configure:6400: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:6411: $? = 4
configure:6415: checking whether we are using the GNU C++ compiler
configure:6442: g++ -c conftest.cpp >&5
configure:6442: $? = 0
configure:6451: result: yes
configure:6460: checking whether g++ accepts -g
configure:6488: g++ -c -g conftest.cpp >&5
configure:6488: $? = 0
configure:6545: result: yes
configure:6570: checking dependency style of g++
configure:6680: result: gcc3
configure:6700: checking how to run the C++ preprocessor
configure:6727: g++ -E conftest.cpp
configure:6727: $? = 0
configure:6741: g++ -E conftest.cpp
conftest.cpp:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:6741: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
/* end confdefs.h. */
#include <ac_nonexistent.h>

configure:6766: result: g++ -E
configure:6786: g++ -E conftest.cpp
configure:6786: $? = 0
configure:6800: g++ -E conftest.cpp
conftest.cpp:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:6800: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
/* end confdefs.h. */
#include <ac_nonexistent.h>

configure:6828: checking if c++ interface enabled
configure:7089: checking for perl
configure:7105: found /usr/bin/perl
configure:7116: result: perl
configure:7135: checking for ar
configure:7151: found /usr/bin/ar
configure:7162: result: ar
configure:7179: checking whether make sets $(MAKE)
configure:7201: result: yes
configure:7216: checking for tr
configure:7234: found /usr/bin/tr
configure:7246: result: /usr/bin/tr
configure:7261: checking if srcdir= and time commands work together
configure:7269: result: yes
configure:7520: checking how to print strings
configure:7547: result: printf
configure:7568: checking for a sed that does not truncate output
configure:7632: result: /bin/sed
configure:7650: checking for grep that handles long lines and -e
configure:7708: result: /bin/grep
configure:7713: checking for egrep
configure:7775: result: /bin/grep -E
configure:7780: checking for fgrep
configure:7842: result: /bin/grep -F
configure:7877: checking for ld used by gcc
configure:7944: result: /usr/bin/ld
configure:7951: checking if the linker (/usr/bin/ld) is GNU ld
configure:7966: result: yes
configure:7978: checking for BSD- or MS-compatible name lister (nm)
configure:8027: result: /usr/bin/nm -B
configure:8157: checking the name lister (/usr/bin/nm -B) interface
configure:8164: gcc -c -O0 conftest.c >&5
configure:8167: /usr/bin/nm -B "conftest.o"
configure:8170: output
0000000000000000 B some_variable
configure:8177: result: BSD nm
configure:8180: checking whether ln -s works
configure:8184: result: yes
configure:8192: checking the maximum length of command line arguments
configure:8317: result: 1572864
configure:8334: checking whether the shell understands some XSI constructs
configure:8344: result: yes
configure:8348: checking whether the shell understands "+="
configure:8354: result: yes
configure:8389: checking for /usr/bin/ld option to reload object files
configure:8396: result: -r
configure:8465: checking for objdump
configure:8481: found /usr/bin/objdump
configure:8492: result: objdump
configure:8524: checking how to recognize dependent libraries
configure:8726: result: pass_all
configure:8891: checking for strip
configure:8907: found /usr/bin/strip
configure:8918: result: strip
configure:8990: checking for ranlib
configure:9006: found /usr/bin/ranlib
configure:9017: result: ranlib
configure:9119: checking command to parse /usr/bin/nm -B output from gcc object
configure:9237: gcc -c -O0 conftest.c >&5
configure:9240: $? = 0
configure:9244: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:9247: $? = 0
configure:9301: gcc -o conftest -O0 conftest.c conftstm.o >&5
configure:9304: $? = 0
configure:9342: result: ok
configure:9437: gcc -c -O0 conftest.c >&5
configure:9440: $? = 0
configure:10198: checking how to run the C preprocessor
configure:10268: result: /usr/bin/cpp
configure:10288: /usr/bin/cpp conftest.c
configure:10288: $? = 0
configure:10302: /usr/bin/cpp conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:10302: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
/* end confdefs.h. */
#include <ac_nonexistent.h>

configure:10331: checking for ANSI C header files
configure:10359: gcc -c -O0 conftest.c >&5
configure:10359: $? = 0
configure:10432: gcc -o conftest -O0 conftest.c >&5
configure:10432: $? = 0
configure:10432: ./conftest
configure:10432: $? = 0
configure:10443: result: yes
configure:10456: checking for sys/types.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10456: checking for sys/stat.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10456: checking for stdlib.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10456: checking for string.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10456: checking for memory.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10456: checking for strings.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10456: checking for inttypes.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10456: checking for stdint.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10456: checking for unistd.h
configure:10456: gcc -c -O0 conftest.c >&5
configure:10456: $? = 0
configure:10456: result: yes
configure:10470: checking for dlfcn.h
configure:10470: gcc -c -O0 conftest.c >&5
configure:10470: $? = 0
configure:10470: result: yes
configure:10656: checking for objdir
configure:10671: result: .libs
configure:10938: checking if gcc supports -fno-rtti -fno-exceptions
configure:10956: gcc -c -O0 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]
configure:10960: $? = 0
configure:10973: result: no
configure:10993: checking for gcc option to produce PIC
configure:11278: result: -fPIC -DPIC
configure:11290: checking if gcc PIC flag -fPIC -DPIC works
configure:11308: gcc -c -O0 -fPIC -DPIC -DPIC conftest.c >&5
configure:11312: $? = 0
configure:11325: result: yes
configure:11349: checking if gcc static flag -static works
configure:11377: result: yes
configure:11392: checking if gcc supports -c -o file.o
configure:11413: gcc -c -O0 -o out/conftest2.o conftest.c >&5
configure:11417: $? = 0
configure:11439: result: yes
configure:11447: checking if gcc supports -c -o file.o
configure:11494: result: yes
configure:11527: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:12618: result: yes
configure:12655: checking whether -lc should be explicitly linked in
configure:12663: gcc -c -O0 conftest.c >&5
configure:12666: $? = 0
configure:12681: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:12684: $? = 0
configure:12698: result: no
configure:12863: checking dynamic linker characteristics
configure:13326: gcc -o conftest -O0 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:13326: $? = 0
configure:13548: result: GNU/Linux ld.so
configure:13655: checking how to hardcode library paths into programs
configure:13680: result: immediate
configure:13782: checking for shl_load
configure:13782: gcc -o conftest -O0 conftest.c >&5
/tmp/cclGWlLf.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `shl_load'
collect2: error: ld returned 1 exit status
configure:13782: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
/* end confdefs.h. */
/* Define shl_load to an innocuous variant, in case <limits.h> declares shl_load.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define shl_load innocuous_shl_load

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char shl_load (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef shl_load

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char shl_load ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub_shl_load || defined __stub___shl_load
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return shl_load ();
  ;
  return 0;
}

configure:13782: result: no
configure:13786: checking for shl_load in -ldld
configure:13819: gcc -o conftest -O0 conftest.c -ldld >&5
/usr/bin/ld: cannot find -ldld
collect2: error: ld returned 1 exit status
configure:13819: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
/* end confdefs.h. */

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char shl_load ();
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return shl_load ();
  ;
  return 0;
}

configure:13828: result: no
configure:13833: checking for dlopen
configure:13833: gcc -o conftest -O0 conftest.c >&5
/tmp/cc46KIin.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `dlopen'
collect2: error: ld returned 1 exit status
configure:13833: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
/* end confdefs.h. */
/* Define dlopen to an innocuous variant, in case <limits.h> declares dlopen.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define dlopen innocuous_dlopen

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char dlopen (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef dlopen

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char dlopen ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub_dlopen || defined __stub___dlopen
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return dlopen ();
  ;
  return 0;
}

configure:13833: result: no
configure:13837: checking for dlopen in -ldl
configure:13870: gcc -o conftest -O0 conftest.c -ldl >&5
configure:13870: $? = 0
configure:13879: result: yes
configure:14014: checking whether a program can dlopen itself
configure:14094: gcc -o conftest -O0 -DHAVE_DLFCN_H -Wl,--export-dynamic conftest.c -ldl >&5
configure:14097: $? = 0
configure:14115: result: yes
configure:14120: checking whether a statically linked program can dlopen itself
configure:14200: gcc -o conftest -O0 -DHAVE_DLFCN_H -Wl,--export-dynamic -static conftest.c -ldl >&5
/tmp/ccOsVAYx.o: In function `main':
conftest.c:(.text+0x20): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/usr/bin/ld: dynamic STT_GNU_IFUNC symbol `strcmp' with pointer equality in `/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/libc.a(strcmp.o)' can not be used when making an executable; recompile with -fPIE and relink with -pie
collect2: error: ld returned 1 exit status
configure:14203: $? = 1
configure:14221: result: no
configure:14260: checking whether stripping libraries is possible
configure:14265: result: yes
configure:14300: checking if libtool supports shared libraries
configure:14302: result: yes
configure:14305: checking whether to build shared libraries
configure:14326: result: yes
configure:14329: checking whether to build static libraries
configure:14333: result: yes
configure:20107: checking if we should install only statically linked executables
configure:20134: checking if -Wl,-rpath should be used to link shared libs in nondefault directories
configure:20151: result: yes
configure:20161: checking make
configure:20164: checking how make searches directories
configure:20181: result: VPATH=DIR1 DIR2 ...
configure:20237: checking whether make will build with undefined variables
configure:20246: result: yes
configure:20257: checking for production mode
configure:20268: result: production
configure:20304: checking for ceil in -lm
configure:20337: gcc -o conftest -O0 conftest.c -lm >&5
conftest.c:30:6: warning: conflicting types for built-in function 'ceil' [enabled by default]
char ceil ();
      ^
configure:20337: $? = 0
configure:20346: result: yes
configure:20468: checking for ANSI C header files
configure:20580: result: yes
configure:20588: checking whether time.h and sys/time.h may both be included
configure:20616: gcc -c -O0 conftest.c >&5
configure:20616: $? = 0
configure:20623: result: yes
configure:20634: checking for difftime
configure:20634: gcc -o conftest -O0 conftest.c -lm >&5
configure:20634: $? = 0
configure:20634: result: yes
configure:20645: checking for gettimeofday
configure:20645: gcc -o conftest -O0 conftest.c -lm >&5
configure:20645: $? = 0
configure:20645: result: yes
configure:20660: checking sys/resource.h usability
configure:20660: gcc -c -O0 conftest.c >&5
configure:20660: $? = 0
configure:20660: result: yes
configure:20660: checking sys/resource.h presence
configure:20660: /usr/bin/cpp conftest.c
configure:20660: $? = 0
configure:20660: result: yes
configure:20660: checking for sys/resource.h
configure:20660: result: yes
configure:20660: checking sys/time.h usability
configure:20660: gcc -c -O0 conftest.c >&5
configure:20660: $? = 0
configure:20660: result: yes
configure:20660: checking sys/time.h presence
configure:20660: /usr/bin/cpp conftest.c
configure:20660: $? = 0
configure:20660: result: yes
configure:20660: checking for sys/time.h
configure:20660: result: yes
configure:20660: checking for unistd.h
configure:20660: result: yes
configure:20660: checking sys/ioctl.h usability
configure:20660: gcc -c -O0 conftest.c >&5
configure:20660: $? = 0
configure:20660: result: yes
configure:20660: checking sys/ioctl.h presence
configure:20660: /usr/bin/cpp conftest.c
configure:20660: $? = 0
configure:20660: result: yes
configure:20660: checking for sys/ioctl.h
configure:20660: result: yes
configure:20660: checking for sys/stat.h
configure:20660: result: yes
configure:20673: checking sys/socket.h usability
configure:20673: gcc -c -O0 conftest.c >&5
configure:20673: $? = 0
configure:20673: result: yes
configure:20673: checking sys/socket.h presence
configure:20673: /usr/bin/cpp conftest.c
configure:20673: $? = 0
configure:20673: result: yes
configure:20673: checking for sys/socket.h
configure:20673: result: yes
configure:20673: checking for sys/types.h
configure:20673: result: yes
configure:20686: checking stddef.h usability
configure:20686: gcc -c -O0 conftest.c >&5
configure:20686: $? = 0
configure:20686: result: yes
configure:20686: checking stddef.h presence
configure:20686: /usr/bin/cpp conftest.c
configure:20686: $? = 0
configure:20686: result: yes
configure:20686: checking for stddef.h
configure:20686: result: yes
configure:20686: checking setjmp.h usability
configure:20686: gcc -c -O0 conftest.c >&5
configure:20686: $? = 0
configure:20686: result: yes
configure:20686: checking setjmp.h presence
configure:20686: /usr/bin/cpp conftest.c
configure:20686: $? = 0
configure:20686: result: yes
configure:20686: checking for setjmp.h
configure:20686: result: yes
configure:20686: checking features.h usability
configure:20686: gcc -c -O0 conftest.c >&5
configure:20686: $? = 0
configure:20686: result: yes
configure:20686: checking features.h presence
configure:20686: /usr/bin/cpp conftest.c
configure:20686: $? = 0
configure:20686: result: yes
configure:20686: checking for features.h
configure:20686: result: yes
configure:20698: checking for stdint.h
configure:20698: result: yes
configure:20729: checking io.h usability
configure:20729: gcc -c -O0 conftest.c >&5
conftest.c:72:16: fatal error: io.h: No such file or directory
#include <io.h>
                ^
compilation terminated.
configure:20729: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
/* end confdefs.h. */
#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif
#include <io.h>

configure:20729: result: no
configure:20729: checking io.h presence
configure:20729: /usr/bin/cpp conftest.c
conftest.c:39:16: fatal error: io.h: No such file or directory
#include <io.h>
                ^
compilation terminated.
configure:20729: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
/* end confdefs.h. */
#include <io.h>

configure:20729: result: no
configure:20729: checking for io.h
configure:20729: result: no
configure:20729: checking winsock.h usability
configure:20729: gcc -c -O0 conftest.c >&5
conftest.c:72:21: fatal error: winsock.h: No such file or directory
#include <winsock.h>
                     ^
compilation terminated.
configure:20729: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
/* end confdefs.h. */
#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif
#include <winsock.h>

configure:20729: result: no
configure:20729: checking winsock.h presence
configure:20729: /usr/bin/cpp conftest.c
conftest.c:39:21: fatal error: winsock.h: No such file or directory
#include <winsock.h>
                     ^
compilation terminated.
configure:20729: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
/* end confdefs.h. */
#include <winsock.h>

configure:20729: result: no
configure:20729: checking for winsock.h
configure:20729: result: no
configure:20729: checking sys/timeb.h usability
configure:20729: gcc -c -O0 conftest.c >&5
configure:20729: $? = 0
configure:20729: result: yes
configure:20729: checking sys/timeb.h presence
configure:20729: /usr/bin/cpp conftest.c
configure:20729: $? = 0
configure:20729: result: yes
configure:20729: checking for sys/timeb.h
configure:20729: result: yes
configure:20785: checking if configure should try to set up large file support
configure:20811: result: yes
configure:20814: checking for special C compiler options needed for large files
configure:20867: result: no
configure:20874: checking for _FILE_OFFSET_BITS value needed for large files
configure:20907: gcc -c -O0 conftest.c >&5
configure:20907: $? = 0
configure:20947: result: no
configure:21048: checking if large (64-bit) files are supported on this system.
configure:21079: gcc -o conftest -O0 conftest.c -lm >&5
configure:21079: $? = 0
configure:21079: ./conftest
configure:21079: $? = 0
configure:21092: result: yes
configure:21141: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
configure:21141: $? = 0
configure:21145: checking for lseek64
configure:21145: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21145: $? = 0
configure:21145: result: yes
configure:21145: checking for fseeko64
configure:21145: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21145: $? = 0
configure:21145: result: yes
configure:21145: checking for ftello64
configure:21145: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21145: $? = 0
configure:21145: result: yes
configure:21145: checking for ftruncate64
configure:21145: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21145: $? = 0
configure:21145: result: yes
configure:21162: checking for fseeko
configure:21162: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21162: $? = 0
configure:21162: result: yes
configure:21162: checking for ftello
configure:21162: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21162: $? = 0
configure:21162: result: yes
configure:21192: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
configure:21192: $? = 0
configure:21196: checking for stat64
configure:21196: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21196: $? = 0
configure:21196: result: yes
configure:21196: checking for fstat64
configure:21196: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21196: $? = 0
configure:21196: result: yes
configure:21211: checking for off_t
configure:21211: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
configure:21211: $? = 0
configure:21211: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
conftest.c: In function 'main':
conftest.c:92:20: error: expected expression before ')' token
if (sizeof ((off_t)))
                    ^
configure:21211: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
/* end confdefs.h. */
#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
if (sizeof ((off_t)))
      return 0;
  ;
  return 0;
}

configure:21211: result: yes
configure:21222: checking for size_t
configure:21222: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
configure:21222: $? = 0
configure:21222: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
conftest.c: In function 'main':
conftest.c:92:21: error: expected expression before ')' token
if (sizeof ((size_t)))
                     ^
configure:21222: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
/* end confdefs.h. */
#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
if (sizeof ((size_t)))
      return 0;
  ;
  return 0;
}

configure:21222: result: yes
configure:21233: checking for ssize_t
configure:21233: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
configure:21233: $? = 0
configure:21233: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
conftest.c: In function 'main':
conftest.c:92:22: error: expected expression before ')' token
if (sizeof ((ssize_t)))
                      ^
configure:21233: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
/* end confdefs.h. */
#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
if (sizeof ((ssize_t)))
      return 0;
  ;
  return 0;
}

configure:21233: result: yes
configure:21244: checking for ptrdiff_t
configure:21244: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
configure:21244: $? = 0
configure:21244: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
conftest.c: In function 'main':
conftest.c:92:24: error: expected expression before ')' token
if (sizeof ((ptrdiff_t)))
                        ^
configure:21244: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
/* end confdefs.h. */
#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
if (sizeof ((ptrdiff_t)))
      return 0;
  ;
  return 0;
}

configure:21244: result: yes
configure:21255: checking whether byte ordering is bigendian
configure:21270: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
conftest.c:49:9: error: unknown type name 'not'
         not a universal capable compiler
         ^
conftest.c:49:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal'
         not a universal capable compiler
               ^
conftest.c:49:15: error: unknown type name 'universal'
configure:21270: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
/* end confdefs.h. */
#ifndef __APPLE_CC__
         not a universal capable compiler
       #endif
       typedef int dummy;

configure:21323: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
configure:21323: $? = 0
configure:21349: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
conftest.c: In function 'main':
conftest.c:63:4: error: unknown type name 'not'
    not big endian
    ^
conftest.c:63:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian'
    not big endian
            ^
configure:21349: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
/* end confdefs.h. */
#include <sys/types.h>
    #include <sys/param.h>

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
#if BYTE_ORDER != BIG_ENDIAN
     not big endian
    #endif

  ;
  return 0;
}

configure:21509: result: no
configure:21531: checking size of char
configure:21536: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21536: $? = 0
configure:21536: ./conftest
configure:21536: $? = 0
configure:21550: result: 1
configure:21564: checking size of short
configure:21569: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21569: $? = 0
configure:21569: ./conftest
configure:21569: $? = 0
configure:21583: result: 2
configure:21597: checking size of int
configure:21602: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21602: $? = 0
configure:21602: ./conftest
configure:21602: $? = 0
configure:21616: result: 4
configure:21630: checking size of unsigned
configure:21635: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21635: $? = 0
configure:21635: ./conftest
configure:21635: $? = 0
configure:21649: result: 4
configure:21663: checking size of long
configure:21668: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21668: $? = 0
configure:21668: ./conftest
configure:21668: $? = 0
configure:21682: result: 8
configure:21696: checking size of long long
configure:21701: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21701: $? = 0
configure:21701: ./conftest
configure:21701: $? = 0
configure:21715: result: 8
configure:21729: checking size of __int64
configure:21734: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
conftest.c: In function 'longval':
conftest.c:87:57: error: '__int64' undeclared (first use in this function)
static long int longval () { return (long int) (sizeof (__int64)); }
                                                         ^
conftest.c:87:57: note: each undeclared identifier is reported only once for each function it appears in
conftest.c: In function 'ulongval':
conftest.c:88:67: error: '__int64' undeclared (first use in this function)
static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
                                                                   ^
conftest.c: In function 'main':
conftest.c:106:28: error: '__int64' undeclared (first use in this function)
   if (((long int) (sizeof (__int64))) < 0)
                            ^
configure:21734: $? = 1
configure: program exited with status 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
/* end confdefs.h. */
#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif
static long int longval () { return (long int) (sizeof (__int64)); }
static unsigned long int ulongval () { return (long int) (sizeof (__int64)); }
#include <stdio.h>
#include <stdlib.h>
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{

  FILE *f = fopen ("conftest.val", "w");
  if (! f)
    return 1;
  if (((long int) (sizeof (__int64))) < 0)
    {
      long int i = longval ();
      if (i != ((long int) (sizeof (__int64))))
  return 1;
      fprintf (f, "%ld", i);
    }
  else
    {
      unsigned long int i = ulongval ();
      if (i != ((long int) (sizeof (__int64))))
  return 1;
      fprintf (f, "%lu", i);
    }
  /* Do not output a trailing newline, as this causes \r\n confusion
     on some platforms. */
  return ferror (f) || fclose (f) != 0;

  ;
  return 0;
}

configure:21748: result: 0
configure:21762: checking size of float
configure:21767: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21767: $? = 0
configure:21767: ./conftest
configure:21767: $? = 0
configure:21781: result: 4
configure:21795: checking size of double
configure:21800: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21800: $? = 0
configure:21800: ./conftest
configure:21800: $? = 0
configure:21814: result: 8
configure:21828: checking size of long double
configure:21833: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21833: $? = 0
configure:21833: ./conftest
configure:21833: $? = 0
configure:21847: result: 16
configure:21947: checking size of int8_t
configure:21952: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21952: $? = 0
configure:21952: ./conftest
configure:21952: $? = 0
configure:21966: result: 1
configure:21980: checking size of uint8_t
configure:21985: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:21985: $? = 0
configure:21985: ./conftest
configure:21985: $? = 0
configure:21999: result: 1
configure:22013: checking size of int_least8_t
configure:22018: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22018: $? = 0
configure:22018: ./conftest
configure:22018: $? = 0
configure:22032: result: 1
configure:22046: checking size of uint_least8_t
configure:22051: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22051: $? = 0
configure:22051: ./conftest
configure:22051: $? = 0
configure:22065: result: 1
configure:22079: checking size of int_fast8_t
configure:22084: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22084: $? = 0
configure:22084: ./conftest
configure:22084: $? = 0
configure:22098: result: 1
configure:22112: checking size of uint_fast8_t
configure:22117: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22117: $? = 0
configure:22117: ./conftest
configure:22117: $? = 0
configure:22131: result: 1
configure:22146: checking size of int16_t
configure:22151: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22151: $? = 0
configure:22151: ./conftest
configure:22151: $? = 0
configure:22165: result: 2
configure:22179: checking size of uint16_t
configure:22184: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22184: $? = 0
configure:22184: ./conftest
configure:22184: $? = 0
configure:22198: result: 2
configure:22212: checking size of int_least16_t
configure:22217: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22217: $? = 0
configure:22217: ./conftest
configure:22217: $? = 0
configure:22231: result: 2
configure:22245: checking size of uint_least16_t
configure:22250: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22250: $? = 0
configure:22250: ./conftest
configure:22250: $? = 0
configure:22264: result: 2
configure:22278: checking size of int_fast16_t
configure:22283: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22283: $? = 0
configure:22283: ./conftest
configure:22283: $? = 0
configure:22297: result: 8
configure:22311: checking size of uint_fast16_t
configure:22316: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22316: $? = 0
configure:22316: ./conftest
configure:22316: $? = 0
configure:22330: result: 8
configure:22345: checking size of int32_t
configure:22350: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22350: $? = 0
configure:22350: ./conftest
configure:22350: $? = 0
configure:22364: result: 4
configure:22378: checking size of uint32_t
configure:22383: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22383: $? = 0
configure:22383: ./conftest
configure:22383: $? = 0
configure:22397: result: 4
configure:22411: checking size of int_least32_t
configure:22416: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22416: $? = 0
configure:22416: ./conftest
configure:22416: $? = 0
configure:22430: result: 4
configure:22444: checking size of uint_least32_t
configure:22449: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22449: $? = 0
configure:22449: ./conftest
configure:22449: $? = 0
configure:22463: result: 4
configure:22477: checking size of int_fast32_t
configure:22482: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22482: $? = 0
configure:22482: ./conftest
configure:22482: $? = 0
configure:22496: result: 8
configure:22510: checking size of uint_fast32_t
configure:22515: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22515: $? = 0
configure:22515: ./conftest
configure:22515: $? = 0
configure:22529: result: 8
configure:22544: checking size of int64_t
configure:22549: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22549: $? = 0
configure:22549: ./conftest
configure:22549: $? = 0
configure:22563: result: 8
configure:22577: checking size of uint64_t
configure:22582: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22582: $? = 0
configure:22582: ./conftest
configure:22582: $? = 0
configure:22596: result: 8
configure:22610: checking size of int_least64_t
configure:22615: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22615: $? = 0
configure:22615: ./conftest
configure:22615: $? = 0
configure:22629: result: 8
configure:22643: checking size of uint_least64_t
configure:22648: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22648: $? = 0
configure:22648: ./conftest
configure:22648: $? = 0
configure:22662: result: 8
configure:22676: checking size of int_fast64_t
configure:22681: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22681: $? = 0
configure:22681: ./conftest
configure:22681: $? = 0
configure:22695: result: 8
configure:22709: checking size of uint_fast64_t
configure:22714: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22714: $? = 0
configure:22714: ./conftest
configure:22714: $? = 0
configure:22728: result: 8
configure:22743: checking size of size_t
configure:22748: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22748: $? = 0
configure:22748: ./conftest
configure:22748: $? = 0
configure:22762: result: 8
configure:22776: checking size of ssize_t
configure:22781: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22781: $? = 0
configure:22781: ./conftest
configure:22781: $? = 0
configure:22795: result: 8
configure:22809: checking size of ptrdiff_t
configure:22814: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22814: $? = 0
configure:22814: ./conftest
configure:22814: $? = 0
configure:22828: result: 8
configure:22846: checking size of off_t
configure:22851: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22851: $? = 0
configure:22851: ./conftest
configure:22851: $? = 0
configure:22865: result: 8
configure:22879: checking size of off64_t
configure:22884: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5
configure:22884: $? = 0
configure:22884: ./conftest
configure:22884: $? = 0
configure:22898: result: 8
configure:22984: checking if dev_t is scalar
configure:23009: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5
configure:23009: $? = 0
configure:23013: result: yes
configure:23115: checking for dmalloc library
configure:23117: result: suppressed
configure:23365: checking zlib.h usability
configure:23365: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:23365: $? = 0
configure:23365: result: yes
configure:23365: checking zlib.h presence
configure:23365: /usr/bin/cpp -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c
configure:23365: $? = 0
configure:23365: result: yes
configure:23365: checking for zlib.h
configure:23365: result: yes
configure:23383: checking for compress2 in -lz
configure:23416: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:23416: $? = 0
configure:23425: result: yes
configure:23438: checking for compress2
configure:23438: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:23438: $? = 0
configure:23438: result: yes
configure:23550: checking for szlib
configure:23552: result: suppressed
configure:23911: checking for pthread
configure:23913: result: suppressed
configure:24095: checking for thread safe support
configure:24113: result: no
configure:24159: checking for tm_gmtoff in struct tm
configure:24182: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24182: $? = 0
configure:24186: result: yes
configure:24194: checking for __tm_gmtoff in struct tm
configure:24217: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:109:17: error: 'struct tm' has no member named '__tm_gmtoff'
struct tm tm; tm.__tm_gmtoff=0;
                 ^
configure:24217: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
/* end confdefs.h. */

#include <sys/time.h>
#include <time.h>
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
struct tm tm; tm.__tm_gmtoff=0;
  ;
  return 0;
}

configure:24224: result: no
configure:24229: checking for global timezone variable
configure:24260: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:109:1: error: 'timezone' undeclared (first use in this function)
timezone=0;
^
conftest.c:109:1: note: each undeclared identifier is reported only once for each function it appears in
configure:24260: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
/* end confdefs.h. */

    #include <sys/time.h>
    #include <time.h>
#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
timezone=0;
  ;
  return 0;
}

configure:24267: result: no
configure:24275: checking whether struct tm is in sys/time.h or time.h
configure:24303: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24303: $? = 0
configure:24310: result: time.h
configure:24318: checking for struct tm.tm_zone
configure:24318: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24318: $? = 0
configure:24318: result: yes
configure:24393: checking for struct timezone
configure:24417: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24417: $? = 0
configure:24422: result: yes
configure:24432: checking whether gettimeofday() gives timezone
configure:24461: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:110:17: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
                 exit(1);
                 ^
configure:24461: $? = 0
configure:24461: ./conftest
configure:24461: $? = 0
configure:24474: result: yes
configure:24485: checking for st_blocks in struct stat
configure:24507: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24507: $? = 0
configure:24511: result: yes
configure:24522: checking for _getvideoconfig
configure:24522: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
/tmp/cccyzOW6.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_getvideoconfig'
collect2: error: ld returned 1 exit status
configure:24522: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
/* end confdefs.h. */
/* Define _getvideoconfig to an innocuous variant, in case <limits.h> declares _getvideoconfig.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define _getvideoconfig innocuous__getvideoconfig

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char _getvideoconfig (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef _getvideoconfig

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char _getvideoconfig ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub__getvideoconfig || defined __stub____getvideoconfig
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return _getvideoconfig ();
  ;
  return 0;
}

configure:24522: result: no
configure:24522: checking for gettextinfo
configure:24522: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
/tmp/ccWysOpd.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `gettextinfo'
collect2: error: ld returned 1 exit status
configure:24522: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
/* end confdefs.h. */
/* Define gettextinfo to an innocuous variant, in case <limits.h> declares gettextinfo.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define gettextinfo innocuous_gettextinfo

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char gettextinfo (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef gettextinfo

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char gettextinfo ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub_gettextinfo || defined __stub___gettextinfo
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return gettextinfo ();
  ;
  return 0;
}

configure:24522: result: no
configure:24522: checking for GetConsoleScreenBufferInfo
configure:24522: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
/tmp/ccqzicCi.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `GetConsoleScreenBufferInfo'
collect2: error: ld returned 1 exit status
configure:24522: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
/* end confdefs.h. */
/* Define GetConsoleScreenBufferInfo to an innocuous variant, in case <limits.h> declares GetConsoleScreenBufferInfo.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define GetConsoleScreenBufferInfo innocuous_GetConsoleScreenBufferInfo

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char GetConsoleScreenBufferInfo (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef GetConsoleScreenBufferInfo

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char GetConsoleScreenBufferInfo ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub_GetConsoleScreenBufferInfo || defined __stub___GetConsoleScreenBufferInfo
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return GetConsoleScreenBufferInfo ();
  ;
  return 0;
}

configure:24522: result: no
configure:24534: checking for _scrsize
configure:24534: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
/tmp/ccCw3zKm.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `_scrsize'
collect2: error: ld returned 1 exit status
configure:24534: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
/* end confdefs.h. */
/* Define _scrsize to an innocuous variant, in case <limits.h> declares _scrsize.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define _scrsize innocuous__scrsize

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char _scrsize (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef _scrsize

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char _scrsize ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub__scrsize || defined __stub____scrsize
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return _scrsize ();
  ;
  return 0;
}

configure:24534: result: no
configure:24534: checking for ioctl
configure:24534: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24534: $? = 0
configure:24534: result: yes
configure:24544: checking for struct videoconfig
configure:24565: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:113:20: error: storage size of 'w' isn't known
struct videoconfig w; w.numtextcols=0;
                    ^
configure:24565: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
/* end confdefs.h. */

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
struct videoconfig w; w.numtextcols=0;
  ;
  return 0;
}

configure:24572: result: no
configure:24577: checking for struct text_info
configure:24598: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:113:18: error: storage size of 'w' isn't known
struct text_info w; w.screenwidth=0;
                  ^
configure:24598: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
/* end confdefs.h. */

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
struct text_info w; w.screenwidth=0;
  ;
  return 0;
}

configure:24605: result: no
configure:24610: checking for TIOCGWINSZ
configure:24631: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24631: $? = 0
configure:24635: result: yes
configure:24643: checking for TIOCGETD
configure:24664: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24664: $? = 0
configure:24668: result: yes
configure:24680: checking for alarm
configure:24680: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24680: $? = 0
configure:24680: result: yes
configure:24680: checking for BSDgettimeofday
configure:24680: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
/tmp/ccaLfcEI.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `BSDgettimeofday'
collect2: error: ld returned 1 exit status
configure:24680: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
/* end confdefs.h. */
/* Define BSDgettimeofday to an innocuous variant, in case <limits.h> declares BSDgettimeofday.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define BSDgettimeofday innocuous_BSDgettimeofday

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char BSDgettimeofday (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef BSDgettimeofday

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char BSDgettimeofday ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub_BSDgettimeofday || defined __stub___BSDgettimeofday
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return BSDgettimeofday ();
  ;
  return 0;
}

configure:24680: result: no
configure:24680: checking for fork
configure:24680: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c:127:6: warning: conflicting types for built-in function 'fork' [enabled by default]
char fork ();
      ^
configure:24680: $? = 0
configure:24680: result: yes
configure:24680: checking for frexpf
configure:24680: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c:128:6: warning: conflicting types for built-in function 'frexpf' [enabled by default]
char frexpf ();
      ^
configure:24680: $? = 0
configure:24680: result: yes
configure:24680: checking for frexpl
configure:24680: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c:129:6: warning: conflicting types for built-in function 'frexpl' [enabled by default]
char frexpl ();
      ^
configure:24680: $? = 0
configure:24680: result: yes
configure:24692: checking for gethostname
configure:24692: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24692: $? = 0
configure:24692: result: yes
configure:24692: checking for getpwuid
configure:24692: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24692: $? = 0
configure:24692: result: yes
configure:24692: checking for getrusage
configure:24692: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24692: $? = 0
configure:24692: result: yes
configure:24692: checking for lstat
configure:24692: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24692: $? = 0
configure:24692: result: yes
configure:24704: checking for rand_r
configure:24704: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24704: $? = 0
configure:24704: result: yes
configure:24704: checking for random
configure:24704: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24704: $? = 0
configure:24704: result: yes
configure:24704: checking for setsysinfo
configure:24704: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
/tmp/ccekVwso.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `setsysinfo'
collect2: error: ld returned 1 exit status
configure:24704: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
/* end confdefs.h. */
/* Define setsysinfo to an innocuous variant, in case <limits.h> declares setsysinfo.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define setsysinfo innocuous_setsysinfo

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char setsysinfo (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef setsysinfo

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char setsysinfo ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub_setsysinfo || defined __stub___setsysinfo
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return setsysinfo ();
  ;
  return 0;
}

configure:24704: result: no
configure:24716: checking for signal
configure:24716: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24716: $? = 0
configure:24716: result: yes
configure:24716: checking for longjmp
configure:24716: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24716: $? = 0
configure:24716: result: yes
configure:24716: checking for setjmp
configure:24716: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24716: $? = 0
configure:24716: result: yes
configure:24716: checking for siglongjmp
configure:24716: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24716: $? = 0
configure:24716: result: yes
configure:24716: checking for sigsetjmp
configure:24716: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
/tmp/ccu0insK.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `sigsetjmp'
collect2: error: ld returned 1 exit status
configure:24716: $? = 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
/* end confdefs.h. */
/* Define sigsetjmp to an innocuous variant, in case <limits.h> declares sigsetjmp.
   For example, HP-UX 11i <limits.h> declares gettimeofday. */
#define sigsetjmp innocuous_sigsetjmp

/* System header to define __stub macros and hopefully few prototypes,
    which can conflict with char sigsetjmp (); below.
    Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
    <limits.h> exists even on freestanding compilers. */

#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif

#undef sigsetjmp

/* Override any GCC internal prototype to avoid an error.
   Use char because int might match the return type of a GCC
   builtin and then its argument prototype would still apply. */
#ifdef __cplusplus
extern "C"
#endif
char sigsetjmp ();
/* The GNU C library defines this for functions which it implements
    to always fail with ENOSYS. Some functions are actually named
    something starting with __ and the normal name is an alias. */
#if defined __stub_sigsetjmp || defined __stub___sigsetjmp
choke me
#endif

#ifdef FC_DUMMY_MAIN
#ifndef FC_DUMMY_MAIN_EQ_F77
# ifdef __cplusplus
     extern "C"
# endif
   int FC_DUMMY_MAIN() { return 1; }
#endif
#endif
int
main ()
{
return sigsetjmp ();
  ;
  return 0;
}

configure:24716: result: no
configure:24716: checking for sigprocmask
configure:24716: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24716: $? = 0
configure:24716: result: yes
configure:24728: checking for snprintf
configure:24728: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c:141:6: warning: conflicting types for built-in function 'snprintf' [enabled by default]
char snprintf ();
      ^
configure:24728: $? = 0
configure:24728: result: yes
configure:24728: checking for srandom
configure:24728: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24728: $? = 0
configure:24728: result: yes
configure:24728: checking for strdup
configure:24728: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c:143:6: warning: conflicting types for built-in function 'strdup' [enabled by default]
char strdup ();
      ^
configure:24728: $? = 0
configure:24728: result: yes
configure:24728: checking for symlink
configure:24728: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24728: $? = 0
configure:24728: result: yes
configure:24728: checking for system
configure:24728: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24728: $? = 0
configure:24728: result: yes
configure:24740: checking for tmpfile
configure:24740: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24740: $? = 0
configure:24740: result: yes
configure:24740: checking for vasprintf
configure:24740: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24740: $? = 0
configure:24740: result: yes
configure:24740: checking for waitpid
configure:24740: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24740: $? = 0
configure:24740: result: yes
configure:24752: checking for vsnprintf
configure:24752: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c:149:6: warning: conflicting types for built-in function 'vsnprintf' [enabled by default]
char vsnprintf ();
      ^
configure:24752: $? = 0
configure:24752: result: yes
configure:24757: checking if vsnprintf returns correct value
configure:24795: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:24795: $? = 0
configure:24795: ./conftest
configure:24795: $? = 0
configure:24808: result: yes
configure:24822: checking if lone colon can be used as an argument
configure:24844: result: yes
configure:24849: checking for an ANSI C-conforming const
configure:24922: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24922: $? = 0
configure:24929: result: yes
configure:24937: checking for inline
configure:24953: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:24953: $? = 0
configure:24961: result: inline
configure:24980: checking for __attribute__ extension
configure:25001: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:25001: $? = 0
configure:25005: result: yes
configure:25012: checking for __func__ extension
configure:25033: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:25033: $? = 0
configure:25037: result: yes
configure:25044: checking for __FUNCTION__ extension
configure:25065: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:25065: $? = 0
configure:25069: result: yes
configure:25076: checking for C99 designated initialization support
configure:25105: gcc -c -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include conftest.c >&5
configure:25105: $? = 0
configure:25109: result: yes
configure:25117: checking how to print long long
configure:25145: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:141:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat=]
  sprintf(s,"%ld",x);
  ^
configure:25145: $? = 0
configure:25145: ./conftest
configure:25145: $? = 0
configure:25155: result: %ld and %lu
configure:25163: checking Threads support system scope
configure:25193: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:25193: $? = 0
configure:25193: ./conftest
configure:25193: $? = 0
configure:25209: result: yes
configure:25274: checking for gpfs
configure:25276: result: suppressed
configure:25281: checking for debug flags
configure:25313: result: none
configure:25330: checking whether function stack tracking is enabled
configure:25349: result: no
configure:25354: checking whether metadata trace file code is enabled
configure:25373: result: no
configure:25379: checking for API tracing
configure:25403: result: no
configure:25411: checking for instrumented library
configure:25437: result: no
configure:25444: checking whether to clear file buffers
configure:25455: result: yes
configure:25469: checking whether a memory checking tool will be used
configure:25488: result: no
configure:25589: checking for parallel support files
configure:25593: result: skipped
configure:26654: checking for I/O filters
configure:26666: result: all (shuffle,fletcher32,nbit,scaleoffset)
configure:26716: checking for Default Virtual File Driver definition
configure:26728: result: yes
configure:26752: checking for Direct Virtual File Driver support
configure:26789: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:147:59: error: 'O_DIRECT' undeclared (first use in this function)
              if((fid=open("tst_file", O_CREAT | O_TRUNC | O_DIRECT, 0755))<0)
                                                           ^
conftest.c:147:59: note: each undeclared identifier is reported only once for each function it appears in
conftest.c:148:3: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
   exit(1);
   ^
configure:26789: $? = 1
configure: program exited with status 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_VASPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_VSNPRINTF 1
#define VSNPRINTF_WORKS 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1
#define HAVE_FILTER_SHUFFLE 1
#define HAVE_FILTER_FLETCHER32 1
#define HAVE_FILTER_NBIT 1
#define HAVE_FILTER_SCALEOFFSET 1
#define DEFAULT_VFD H5FD_SEC2
/* end confdefs.h. */

    #include <sys/types.h>
    #include <sys/stat.h>
    #include <fcntl.h>
          int main(void)
          {
             int fid;
             if((fid=open("tst_file", O_CREAT | O_TRUNC | O_DIRECT, 0755))<0)
    exit(1);
             close(fid);
             remove("tst_file");
             exit (0);
          }

configure:26833: result: no
configure:26851: checking whether exception handling functions is checked during data conversions
configure:26862: result: yes
configure:26872: checking whether data accuracy is guaranteed during data conversions
configure:26883: result: yes
configure:26893: checking if converting denormalized floating-point values is possible
configure:26906: result: yes
configure:26913: checking if converting floating-point values to long long is not working
configure:26929: result: false
configure:26933: checking if the machine has window style path name
configure:26945: result: no
configure:26950: checking if converting from long double to integers is accurate
configure:26968: result: yes
configure:26976: checking if converting from long double to integers works
configure:27017: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:154:28: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default]
             align = (void*)malloc(sizeof(long double));
                            ^
conftest.c:155:13: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
             memcpy(align, &ld, sizeof(long double));
             ^
conftest.c:164:13: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
             exit(ret);
             ^
configure:27017: $? = 0
configure:27017: ./conftest
configure:27017: $? = 0
configure:27034: result: yes
configure:27041: checking if accurately converting from integers to long double
configure:27059: result: yes
configure:27066: checking if accurately converting unsigned long to float values
configure:27110: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:172:9: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
         exit(ret);
         ^
configure:27110: $? = 0
configure:27110: ./conftest
configure:27110: $? = 0
configure:27126: result: yes
configure:27134: checking if accurately converting unsigned long long to floating-point values
configure:27234: result: yes
configure:27241: checking if accurately roundup converting floating-point to unsigned long long values
configure:27274: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:163:9: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
         exit(ret);
         ^
configure:27274: $? = 0
configure:27274: ./conftest
configure:27274: $? = 0
configure:27290: result: yes
configure:27297: checking if right maximum converting floating-point to unsigned long long values
configure:27337: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:171:9: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
         exit(ret);
         ^
configure:27337: $? = 0
configure:27337: ./conftest
configure:27337: $? = 1
configure: program exited with status 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_VASPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_VSNPRINTF 1
#define VSNPRINTF_WORKS 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1
#define HAVE_FILTER_SHUFFLE 1
#define HAVE_FILTER_FLETCHER32 1
#define HAVE_FILTER_NBIT 1
#define HAVE_FILTER_SCALEOFFSET 1
#define DEFAULT_VFD H5FD_SEC2
#define WANT_DCONV_EXCEPTION 1
#define WANT_DATA_ACCURACY 1
#define CONVERT_DENORMAL_FLOAT 1
#define LDOUBLE_TO_INTEGER_ACCURATE 1
#define LDOUBLE_TO_INTEGER_WORKS 1
#define INTEGER_TO_LDOUBLE_ACCURATE 1
#define ULONG_TO_FLOAT_ACCURATE 1
#define ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1
#define FP_TO_ULLONG_ACCURATE 1
/* end confdefs.h. */

    int main(void)
    {
        float f = 9701917572145405952.00f;
        double d1 = 9701917572145405952.00L;
        long double d2 = 9701917572145405952.00L;
        double d3 = 2e40L;
        unsigned long long l1 = (unsigned long long)f;
        unsigned long long l2 = (unsigned long long)d1;
        unsigned long long l3 = (unsigned long long)d2;
        unsigned long long l4;
        unsigned long long l5 = 0x7fffffffffffffffULL;
        int ret = 0;

        if(l1 <= l5 || l2 <= l5 || l3 <= l5)
            ret = 1;

        l4 = (unsigned long long)d3;
        if(l4 <= l5)
            ret = 1;

done:
        exit(ret);
    }

configure:27356: result: no
configure:27360: checking if correctly converting long double to unsigned int values
configure:27393: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:161:13: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
             exit(ret);
             ^
configure:27393: $? = 0
configure:27393: ./conftest
configure:27393: $? = 0
configure:27410: result: yes
configure:27417: checking if compiling unsigned long long to floating-point typecasts work
configure:27430: result: yes
configure:27437: checking if compiling long long to floating-point typecasts work
configure:27450: result: yes
configure:27457: checking if converting unsigned long long to long double with precision
configure:27550: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:27550: $? = 0
configure:27550: ./conftest
configure:27550: $? = 0
configure:27567: result: yes
configure:27574: checking if overflows normally converting floating-point to integer values
configure:27601: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:162:9: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
         exit(0);
         ^
configure:27601: $? = 0
configure:27601: ./conftest
configure:27601: $? = 0
configure:27617: result: yes
configure:27624: checking if using special algorithm to convert long double to (unsigned) long values
configure:27697: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:169:17: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
                 memcpy(s, &ld, 16);
                 ^
conftest.c:206:13: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
             exit(ret);
             ^
configure:27697: $? = 0
configure:27697: ./conftest
configure:27697: $? = 1
configure: program exited with status 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_VASPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_VSNPRINTF 1
#define VSNPRINTF_WORKS 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1
#define HAVE_FILTER_SHUFFLE 1
#define HAVE_FILTER_FLETCHER32 1
#define HAVE_FILTER_NBIT 1
#define HAVE_FILTER_SCALEOFFSET 1
#define DEFAULT_VFD H5FD_SEC2
#define WANT_DCONV_EXCEPTION 1
#define WANT_DATA_ACCURACY 1
#define CONVERT_DENORMAL_FLOAT 1
#define LDOUBLE_TO_INTEGER_ACCURATE 1
#define LDOUBLE_TO_INTEGER_WORKS 1
#define INTEGER_TO_LDOUBLE_ACCURATE 1
#define ULONG_TO_FLOAT_ACCURATE 1
#define ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1
#define FP_TO_ULLONG_ACCURATE 1
#define LDOUBLE_TO_UINT_ACCURATE 1
#define ULLONG_TO_FP_CAST_WORKS 1
#define LLONG_TO_FP_CAST_WORKS 1
#define ULLONG_TO_LDOUBLE_PRECISION 1
#define FP_TO_INTEGER_OVERFLOW_WORKS 1
/* end confdefs.h. */

        int main(void)
        {
            long double ld = 20041683600089727.779961L;
            long ll;
            unsigned long ull;
            unsigned char s[16];
            unsigned char s2[8];
            int ret = 1;

            if(sizeof(long double) == 16 && sizeof(long) == 8) {
                /*make sure the long double type has 16 bytes in size and
                 * 11 bits of exponent. If it is,
                 *the bit sequence should be like below. It's not
                 *a decent way to check but this info isn't available. */
                memcpy(s, &ld, 16);
                if(s[0]==0x43 && s[1]==0x51 && s[2]==0xcc && s[3]==0xf3 &&
                    s[4]==0x85 && s[5]==0xeb && s[6]==0xc8 && s[7]==0xa0 &&
                    s[8]==0xbf && s[9]==0xcc && s[10]==0x2a && s[11]==0x3c) {

                    /* Assign the hexadecimal value of long double type. */
                    s[0]=0x43; s[1]=0x51; s[2]=0xcc; s[3]=0xf3;
                    s[4]=0x85; s[5]=0xeb; s[6]=0xc8; s[7]=0xa0;
                    s[8]=0xbf; s[9]=0xcc; s[10]=0x2a; s[11]=0x3c;
                    s[12]=0x3d; s[13]=0x85; s[14]=0x56; s[15]=0x20;

                    memcpy(&ld, s, 16);

                    ll = (long)ld;
                    memcpy(s2, &ll, 8);

                    /* The library's algorithm converts it to 0x 00 47 33 ce 17 af 22 82
                     * and gets wrong value 20041683600089730 on the IBM Power6 Linux.
                     * But the IBM Power6 Linux converts it to 0x00 47 33 ce 17 af 22 7f
                     * and gets the correct value 20041683600089727. It uses some special
                     * algorithm. We're going to define the macro and skip the test until
                     * we can figure out how they do it. */
                    if(s2[0]==0x00 && s2[1]==0x47 && s2[2]==0x33 && s2[3]==0xce &&
                       s2[4]==0x17 && s2[5]==0xaf && s2[6]==0x22 && s2[7]==0x7f)
                        ret = 0;

                    ull = (unsigned long)ld;
                    memcpy(s2, &ull, 8);

                    /* The unsigned long is the same as signed long. */
                    if(s2[0]==0x00 && s2[1]==0x47 && s2[2]==0x33 && s2[3]==0xce &&
                       s2[4]==0x17 && s2[5]==0xaf && s2[6]==0x22 && s2[7]==0x7f)
                        ret = 0;
                }
            }

    done:
            exit(ret);
        }

configure:27717: result: no
configure:27721: checking if using special algorithm to convert (unsigned) long to long double values
configure:27796: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:167:17: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
                 memcpy(s, &ld, 16);
                 ^
conftest.c:176:17: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
                 memcpy(s, &ld, 16);
                 ^
conftest.c:192:17: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
                 memcpy(s, &ld, 16);
                 ^
conftest.c:208:13: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
             exit(ret);
             ^
configure:27796: $? = 0
configure:27796: ./conftest
configure:27796: $? = 1
configure: program exited with status 1
configure: failed program was:

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_VASPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_VSNPRINTF 1
#define VSNPRINTF_WORKS 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1
#define HAVE_FILTER_SHUFFLE 1
#define HAVE_FILTER_FLETCHER32 1
#define HAVE_FILTER_NBIT 1
#define HAVE_FILTER_SCALEOFFSET 1
#define DEFAULT_VFD H5FD_SEC2
#define WANT_DCONV_EXCEPTION 1
#define WANT_DATA_ACCURACY 1
#define CONVERT_DENORMAL_FLOAT 1
#define LDOUBLE_TO_INTEGER_ACCURATE 1
#define LDOUBLE_TO_INTEGER_WORKS 1
#define INTEGER_TO_LDOUBLE_ACCURATE 1
#define ULONG_TO_FLOAT_ACCURATE 1
#define ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1
#define FP_TO_ULLONG_ACCURATE 1
#define LDOUBLE_TO_UINT_ACCURATE 1
#define ULLONG_TO_FP_CAST_WORKS 1
#define LLONG_TO_FP_CAST_WORKS 1
#define ULLONG_TO_LDOUBLE_PRECISION 1
#define FP_TO_INTEGER_OVERFLOW_WORKS 1
/* end confdefs.h. */

        int main(void)
        {
            long double ld;
            long ll;
            unsigned long ull;
            unsigned char s[16];
            int flag=0, ret=1;

            /*Determine if long double has 16 byte in size, 11 bit exponent, and
             *the bias is 0x3ff */
            if(sizeof(long double) == 16) {
                ld = 1.0L;
                memcpy(s, &ld, 16);
                if(s[0]==0x3f && s[1]==0xf0 && s[2]==0x00 && s[3]==0x00 &&
                    s[4]==0x00 && s[5]==0x00 && s[6]==0x00 && s[7]==0x00)
                    flag = 1;
            }

            if(flag==1 && sizeof(long)==8) {
                ll = 0x003fffffffffffffL;
                ld = (long double)ll;
                memcpy(s, &ld, 16);
                /* The library converts the value to 0x434fffffffffffff8000000000000000.
                 * In decimal it is 18014398509481982.000000, one value short of the original.
                 * The IBM Power6 Linux converts it to 0x4350000000000000bff0000000000000.
                 * The value is correct in decimal. It uses some special
                 * algorithm. We're going to define the macro and skip the test until
                 * we can figure out how they do it. */
                if(s[0]==0x43 && s[1]==0x50 && s[2]==0x00 && s[3]==0x00 &&
                    s[4]==0x00 && s[5]==0x00 && s[6]==0x00 && s[7]==0x00 &&
                    s[8]==0xbf && s[9]==0xf0 && s[10]==0x00 && s[11]==0x00 &&
                    s[12]==0x00 && s[13]==0x00 && s[14]==0x00 && s[15]==0x00)
                    ret = 0;
            }
            if(flag==1 && sizeof(unsigned long)==8) {
                ull = 0xffffffffffffffffUL;
                ld = (long double)ull;
                memcpy(s, &ld, 16);
                /* Use a different value from signed long to test. The problem is the same
                 * for both long and unsigned long. The value is 18446744073709551615.
                 * The library converts the value to 0x43effffffffffffffe000000000000000.
                 * In decimal it's 18446744073709548544.000000, very different from the original.
                 * The IBM Power6 Linux converts it to 0x43f0000000000000bff0000000000000.
                 * The value is correct in decimal. It uses some special
                 * algorithm. We're going to define the macro and skip the test until
                 * we can figure out how they do it. */
                if(s[0]==0x43 && s[1]==0xf0 && s[2]==0x00 && s[3]==0x00 &&
                    s[4]==0x00 && s[5]==0x00 && s[6]==0x00 && s[7]==0x00 &&
                    s[8]==0xbf && s[9]==0xf0 && s[10]==0x00 && s[11]==0x00 &&
                    s[12]==0x00 && s[13]==0x00 && s[14]==0x00 && s[15]==0x00)
                    ret = 0;
            }
    done:
            exit(ret);
        }

configure:27816: result: no
configure:27820: checking if correctly converting long double to (unsigned) long long values
configure:27876: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:168:17: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
                 memcpy(s, &ld, 16);
                 ^
conftest.c:189:13: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
             exit(ret);
             ^
configure:27876: $? = 0
configure:27876: ./conftest
configure:27876: $? = 0
configure:27893: result: yes
configure:27901: checking if correctly converting (unsigned) long long to long double values
configure:27961: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
conftest.c: In function 'main':
conftest.c:168:17: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
                 memcpy(s, &ld, 16);
                 ^
conftest.c:177:17: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
                 memcpy(s, &ld, 16);
                 ^
conftest.c:187:17: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default]
                 memcpy(s, &ld, 16);
                 ^
conftest.c:194:13: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default]
             exit(ret);
             ^
configure:27961: $? = 0
configure:27961: ./conftest
configure:27961: $? = 0
configure:27978: result: yes
configure:27985: checking if bad code for log2 routine is generated
configure:28001: result: no
configure:28134: checking if high level library is enabled
configure:28154: checking additional programs should be built
configure:28179: checking if deprecated public symbols are available
configure:28191: result: yes
configure:28207: checking which version of public symbols to use by default
configure:28226: result: v18
configure:28239: checking Whether to perform strict file format checks
configure:28265: result: no
configure:28272: checking Whether to have library information embedded in the executables
configure:28283: result: yes
configure:28294: checking Whether to enable the h5dump packed bits feature
configure:28305: result: yes
configure:28317: checking if alignment restrictions are strictly enforced
configure:28378: gcc -o conftest -O0 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib conftest.c -lz -lm >&5
configure:28378: $? = 0
configure:28378: ./conftest
configure:28378: $? = 0
configure:28383: result: no
configure:28649: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by HDF5 config.status 1.8.6, which was
generated by GNU Autoconf 2.67. Invocation command line was

  CONFIG_FILES =
  CONFIG_HEADERS =
  CONFIG_LINKS =
  CONFIG_COMMANDS =
  $ ./config.status

on recrema-Precision-T7610

config.status:1504: creating src/libhdf5.settings
config.status:1504: creating Makefile
config.status:1504: creating src/Makefile
config.status:1504: creating test/Makefile
config.status:1504: creating test/testcheck_version.sh
config.status:1504: creating test/testerror.sh
config.status:1504: creating test/H5srcdir_str.h
config.status:1504: creating test/testlibinfo.sh
config.status:1504: creating testpar/Makefile
config.status:1504: creating testpar/testph5.sh
config.status:1504: creating perform/Makefile
config.status:1504: creating tools/Makefile
config.status:1504: creating tools/h5dump/Makefile
config.status:1504: creating tools/h5dump/testh5dump.sh
config.status:1504: creating tools/h5dump/testh5dumpxml.sh
config.status:1504: creating tools/h5ls/testh5ls.sh
config.status:1504: creating tools/h5import/Makefile
config.status:1504: creating tools/h5diff/Makefile
config.status:1504: creating tools/h5jam/Makefile
config.status:1504: creating tools/h5jam/testh5jam.sh
config.status:1504: creating tools/h5repack/Makefile
config.status:1504: creating tools/h5repack/h5repack.sh
config.status:1504: creating tools/h5ls/Makefile
config.status:1504: creating tools/h5copy/Makefile
config.status:1504: creating tools/lib/Makefile
config.status:1504: creating tools/misc/Makefile
config.status:1504: creating tools/misc/h5cc
config.status:1504: creating tools/misc/testh5repart.sh
config.status:1504: creating tools/h5stat/testh5stat.sh
config.status:1504: creating tools/h5stat/Makefile
config.status:1504: creating examples/Makefile
config.status:1504: creating examples/run-c-ex.sh
config.status:1504: creating examples/testh5cc.sh
config.status:1504: creating c++/Makefile
config.status:1504: creating c++/src/Makefile
config.status:1504: creating c++/src/h5c++
config.status:1504: creating c++/test/Makefile
config.status:1504: creating c++/test/H5srcdir_str.h
config.status:1504: creating c++/examples/Makefile
config.status:1504: creating c++/examples/run-c++-ex.sh
config.status:1504: creating c++/examples/testh5c++.sh
config.status:1504: creating fortran/Makefile
config.status:1504: creating fortran/src/h5fc
config.status:1504: creating fortran/src/Makefile
config.status:1504: creating fortran/test/Makefile
config.status:1504: creating fortran/testpar/Makefile
config.status:1504: creating fortran/examples/Makefile
config.status:1504: creating fortran/examples/run-fortran-ex.sh
config.status:1504: creating fortran/examples/testh5fc.sh
config.status:1504: creating hl/Makefile
config.status:1504: creating hl/src/Makefile
config.status:1504: creating hl/test/Makefile
config.status:1504: creating hl/test/H5srcdir_str.h
config.status:1504: creating hl/tools/Makefile
config.status:1504: creating hl/tools/gif2h5/Makefile
config.status:1504: creating hl/examples/Makefile
config.status:1504: creating hl/examples/run-hlc-ex.sh
config.status:1504: creating hl/c++/Makefile
config.status:1504: creating hl/c++/src/Makefile
config.status:1504: creating hl/c++/test/Makefile
config.status:1504: creating hl/c++/examples/Makefile
config.status:1504: creating hl/c++/examples/run-hlc++-ex.sh
config.status:1504: creating hl/fortran/Makefile
config.status:1504: creating hl/fortran/src/Makefile
config.status:1504: creating hl/fortran/test/Makefile
config.status:1504: creating hl/fortran/examples/Makefile
config.status:1504: creating hl/fortran/examples/run-hlfortran-ex.sh
config.status:1504: creating src/H5config.h
config.status:1732: executing default-1 commands
config.status:1732: executing depfiles commands
config.status:1732: executing libtool commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=gcc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=-O0
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=set
ac_cv_env_CPP_value=/usr/bin/cpp
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=g++
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=set
ac_cv_env_FC_value=gfortran
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_BSDgettimeofday=no
ac_cv_func_GetConsoleScreenBufferInfo=no
ac_cv_func__getvideoconfig=no
ac_cv_func__scrsize=no
ac_cv_func_alarm=yes
ac_cv_func_compress2=yes
ac_cv_func_difftime=yes
ac_cv_func_dlopen=no
ac_cv_func_fork=yes
ac_cv_func_frexpf=yes
ac_cv_func_frexpl=yes
ac_cv_func_fseeko64=yes
ac_cv_func_fseeko=yes
ac_cv_func_fstat64=yes
ac_cv_func_ftello64=yes
ac_cv_func_ftello=yes
ac_cv_func_ftruncate64=yes
ac_cv_func_gethostname=yes
ac_cv_func_getpwuid=yes
ac_cv_func_getrusage=yes
ac_cv_func_gettextinfo=no
ac_cv_func_gettimeofday=yes
ac_cv_func_ioctl=yes
ac_cv_func_longjmp=yes
ac_cv_func_lseek64=yes
ac_cv_func_lstat=yes
ac_cv_func_rand_r=yes
ac_cv_func_random=yes
ac_cv_func_setjmp=yes
ac_cv_func_setsysinfo=no
ac_cv_func_shl_load=no
ac_cv_func_siglongjmp=yes
ac_cv_func_signal=yes
ac_cv_func_sigprocmask=yes
ac_cv_func_sigsetjmp=no
ac_cv_func_snprintf=yes
ac_cv_func_srandom=yes
ac_cv_func_stat64=yes
ac_cv_func_strdup=yes
ac_cv_func_symlink=yes
ac_cv_func_system=yes
ac_cv_func_tmpfile=yes
ac_cv_func_vasprintf=yes
ac_cv_func_vsnprintf=yes
ac_cv_func_waitpid=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_features_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_io_h=no
ac_cv_header_memory_h=yes
ac_cv_header_setjmp_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stddef_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_ioctl_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_socket_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_timeb_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_header_winsock_h=no
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_dl_dlopen=yes
ac_cv_lib_dld_shl_load=no
ac_cv_lib_m_ceil=yes
ac_cv_lib_z_compress2=yes
ac_cv_member_struct_tm_tm_zone=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_TR=/usr/bin/tr
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AR=ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP=/usr/bin/cpp
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_PERL=perl
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_sizeof___int64=0
ac_cv_sizeof_char=1
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int16_t=2
ac_cv_sizeof_int32_t=4
ac_cv_sizeof_int64_t=8
ac_cv_sizeof_int8_t=1
ac_cv_sizeof_int=4
ac_cv_sizeof_int_fast16_t=8
ac_cv_sizeof_int_fast32_t=8
ac_cv_sizeof_int_fast64_t=8
ac_cv_sizeof_int_fast8_t=1
ac_cv_sizeof_int_least16_t=2
ac_cv_sizeof_int_least32_t=4
ac_cv_sizeof_int_least64_t=8
ac_cv_sizeof_int_least8_t=1
ac_cv_sizeof_long=8
ac_cv_sizeof_long_double=16
ac_cv_sizeof_long_long=8
ac_cv_sizeof_off64_t=8
ac_cv_sizeof_off_t=8
ac_cv_sizeof_ptrdiff_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=8
ac_cv_sizeof_ssize_t=8
ac_cv_sizeof_uint16_t=2
ac_cv_sizeof_uint32_t=4
ac_cv_sizeof_uint64_t=8
ac_cv_sizeof_uint8_t=1
ac_cv_sizeof_uint_fast16_t=8
ac_cv_sizeof_uint_fast32_t=8
ac_cv_sizeof_uint_fast64_t=8
ac_cv_sizeof_uint_fast8_t=1
ac_cv_sizeof_uint_least16_t=2
ac_cv_sizeof_uint_least32_t=4
ac_cv_sizeof_uint_least64_t=8
ac_cv_sizeof_uint_least8_t=1
ac_cv_sizeof_unsigned=4
ac_cv_struct_tm=time.h
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
hdf5_cv_bad_log2_code_generated=no
hdf5_cv_convert_denormal_float=yes
hdf5_cv_convert_float_llong_not_works=no
hdf5_cv_direct_io=no
hdf5_cv_fp_to_integer_overflow_works=yes
hdf5_cv_fp_to_ullong_accurate=yes
hdf5_cv_fp_to_ullong_right_maximum=no
hdf5_cv_gettimeofday_tz=yes
hdf5_cv_have_lfs=yes
hdf5_cv_host=x86_64-unknown-linux-gnu
hdf5_cv_integer_to_ldouble_accurate=yes
hdf5_cv_ldouble_to_integer_accurate=yes
hdf5_cv_ldouble_to_integer_works=yes
hdf5_cv_ldouble_to_llong_accurate=yes
hdf5_cv_ldouble_to_long_special=no
hdf5_cv_ldouble_to_uint_accurate=yes
hdf5_cv_llong_to_fp_cast_works=yes
hdf5_cv_llong_to_ldouble_correct=yes
hdf5_cv_lone_colon=yes
hdf5_cv_long_to_ldouble_special=no
hdf5_cv_mpi_complex_derived_datatype_works=no
hdf5_cv_mpi_special_collective_io_works=no
hdf5_cv_printf_ll=l
hdf5_cv_system_scope_threads=yes
hdf5_cv_ullong_to_fp_cast_works=yes
hdf5_cv_ullong_to_ldouble_precision=yes
hdf5_cv_ulong_to_float_accurate=yes
hdf5_cv_ulong_to_fp_bottom_bit_accurate=yes
hdf5_cv_vsnprintf_works=yes
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_dlopen=dlopen
lt_cv_dlopen_libs=-ldl
lt_cv_dlopen_self=yes
lt_cv_dlopen_self_static=no
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_gnu_ld=yes
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/bin/missing --run aclocal-1.11'
ADD_PARALLEL_FILES='no'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/bin/missing --run tar'
AM_CFLAGS=''
AM_CPPFLAGS='-I/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE '
AM_CXXFLAGS=''
AM_FCFLAGS=''
AM_LDFLAGS=' -L/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib'
AM_MAKEFLAGS=''
AR='ar'
AUTOCONF='${SHELL} /home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/bin/missing --run autoconf'
AUTOHEADER='${SHELL} /home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/bin/missing --run autoheader'
AUTOMAKE='${SHELL} /home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/bin/missing --run automake-1.11'
AWK='gawk'
BUILD_ALL_CONDITIONAL_FALSE=''
BUILD_ALL_CONDITIONAL_TRUE='#'
BUILD_CXX_CONDITIONAL_FALSE=''
BUILD_CXX_CONDITIONAL_TRUE='#'
BUILD_FORTRAN_CONDITIONAL_FALSE=''
BUILD_FORTRAN_CONDITIONAL_TRUE='#'
BUILD_HDF5_HL_CONDITIONAL_FALSE='#'
BUILD_HDF5_HL_CONDITIONAL_TRUE=''
BUILD_PARALLEL_CONDITIONAL_FALSE=''
BUILD_PARALLEL_CONDITIONAL_TRUE='#'
BUILD_SZIP_CONDITIONAL_FALSE=''
BUILD_SZIP_CONDITIONAL_TRUE='#'
BYTESEX='little-endian'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CC_VERSION='/usr/bin/gcc'
CFLAGS='-O0'
CLEARFILEBUF='yes'
CODESTACK='no'
CONFIG_DATE='Wed Oct 8 15:50:40 GST 2014'
CONFIG_MODE='production'
CONFIG_USER='recrema@recrema-Precision-T7610'
CPP='/usr/bin/cpp'
CPPFLAGS=''
CXX='no'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=''
CXX_SHARED_CONDITIONAL_FALSE=''
CXX_SHARED_CONDITIONAL_TRUE='#'
CXX_VERSION='no'
CYGPATH_W='echo'
DEBUG_PKG=''
DEFAULT_API_VERSION='v18'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DEPRECATED_SYMBOLS='yes'
DIRECT_VFD='no'
DIRECT_VFD_CONDITIONAL_FALSE=''
DIRECT_VFD_CONDITIONAL_TRUE='#'
DSYMUTIL=''
DUMPBIN=''
DYNAMIC_DIRS='-R/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib -R/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/zlib/lib '
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
EXTERNAL_FILTERS='deflate(zlib)'
F9XMODEXT=''
F9XMODFLAG=''
F9XSUFFIXFLAG=''
FC='no'
FCFLAGS=''
FCFLAGS_f90=''
FCLIBS=''
FC_VERSION='no'
FGREP='/bin/grep -F'
FILTERS='shuffle,fletcher32,nbit,scaleoffset'
FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#'
FORTRAN_HAVE_SIZEOF_FALSE=''
FORTRAN_HAVE_SIZEOF_TRUE='#'
FORTRAN_SHARED_CONDITIONAL_FALSE=''
FORTRAN_SHARED_CONDITIONAL_TRUE='#'
FSEARCH_DIRS=''
GPFS='no'
GREP='/bin/grep'
H5_CFLAGS=' -ansi -pedantic -Wall -W -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -O3 -fomit-frame-pointer -finline-functions'
H5_CPPFLAGS='-D_POSIX_SOURCE -DNDEBUG -UH5_DEBUG_API'
H5_CXXFLAGS=' '
H5_FCFLAGS=' '
H5_LONE_COLON='yes'
H5_VERSION='1.8.6'
HADDR_T=''
HAVE_DMALLOC='no'
HDF5_HL='yes'
HDF5_INTERFACES=''
HDF_CXX='no'
HDF_FORTRAN='no'
HID_T=''
HL='hl'
HL_FOR=''
HSIZE_T=''
HSSIZE_T=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTRUMENT='no'
INSTRUMENT_LIBRARY='no'
LARGEFILE='yes'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS=''
LIBOBJS=''
LIBS=' -lz -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LL_PATH=''
LN_S='ln -s'
LTLIBOBJS=''
LT_STATIC_EXEC=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/bin/missing --run makeinfo'
MKDIR_P='/bin/mkdir -p'
MPE='no'
MPI_GET_SIZE=''
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJECT_NAMELEN_DEFAULT_F=''
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='hdf5'
PACKAGE_BUGREPORT='help@hdfgroup.org'
PACKAGE_NAME='HDF5'
PACKAGE_STRING='HDF5 1.8.6'
PACKAGE_TARNAME='hdf5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8.6'
PACKED_BITS='yes'
PARALLEL='no'
PATH_SEPARATOR=':'
PERL='perl'
PTHREAD=''
RANLIB='ranlib'
ROOT='/home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6'
RUNPARALLEL=''
RUNSERIAL=''
R_INTEGER=''
R_LARGE=''
SEARCH='VPATH=$(srcdir) $(top_builddir)/src $(top_srcdir)/src'
SED='/bin/sed'
SETX='set -x'
SET_MAKE=''
SHELL='/bin/bash'
SIZE_T=''
STATIC_EXEC='no'
STATIC_SHARED='static, shared'
STRICT_FORMAT_CHECKS='no'
STRIP='strip'
TESTPARALLEL=''
THREADSAFE='no'
TIME='time'
TR='/usr/bin/tr'
TRACE_API='no'
UNAME_INFO='Linux recrema-Precision-T7610 3.13.0-36-generic #63-Ubuntu SMP Wed Sep 3 21:30:07 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux'
USE_FILTER_DEFLATE='yes'
USE_FILTER_FLETCHER32='yes'
USE_FILTER_NBIT='yes'
USE_FILTER_SCALEOFFSET='yes'
USE_FILTER_SHUFFLE='yes'
USE_FILTER_SZIP='no'
USINGMEMCHECKER='no'
VERSION='1.8.6'
WORDS_BIGENDIAN='no'
ac_ct_CC='gcc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared='yes'
enable_static='yes'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/recrema/Naseema/BUILD_CHIMERE/LIBRARIES/hdf5'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.6"
#define PACKAGE_STRING "HDF5 1.8.6"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.6"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define STDC_HEADERS 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_DIFFTIME 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_STDDEF_H 1
#define HAVE_SETJMP_H 1
#define HAVE_FEATURES_H 1
#define HAVE_STDINT_H 1
#define HAVE_SYS_TIMEB_H 1
#define HAVE_LSEEK64 1
#define HAVE_FSEEKO64 1
#define HAVE_FTELLO64 1
#define HAVE_FTRUNCATE64 1
#define HAVE_FSEEKO 1
#define HAVE_FTELLO 1
#define HAVE_STAT64 1
#define HAVE_FSTAT64 1
#define SIZEOF_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF___INT64 0
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_DOUBLE 16
#include <sys/types.h>
#include <stdint.h>
#define SIZEOF_INT8_T 1
#define SIZEOF_UINT8_T 1
#define SIZEOF_INT_LEAST8_T 1
#define SIZEOF_UINT_LEAST8_T 1
#define SIZEOF_INT_FAST8_T 1
#define SIZEOF_UINT_FAST8_T 1
#define SIZEOF_INT16_T 2
#define SIZEOF_UINT16_T 2
#define SIZEOF_INT_LEAST16_T 2
#define SIZEOF_UINT_LEAST16_T 2
#define SIZEOF_INT_FAST16_T 8
#define SIZEOF_UINT_FAST16_T 8
#define SIZEOF_INT32_T 4
#define SIZEOF_UINT32_T 4
#define SIZEOF_INT_LEAST32_T 4
#define SIZEOF_UINT_LEAST32_T 4
#define SIZEOF_INT_FAST32_T 8
#define SIZEOF_UINT_FAST32_T 8
#define SIZEOF_INT64_T 8
#define SIZEOF_UINT64_T 8
#define SIZEOF_INT_LEAST64_T 8
#define SIZEOF_UINT_LEAST64_T 8
#define SIZEOF_INT_FAST64_T 8
#define SIZEOF_UINT_FAST64_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_SSIZE_T 8
#define SIZEOF_PTRDIFF_T 8
#include <sys/types.h> /*for off_t definition*/
#define SIZEOF_OFF_T 8
#define SIZEOF_OFF64_T 8
#define DEV_T_IS_SCALAR 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_FILTER_DEFLATE 1
#define HAVE_TM_GMTOFF 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_STRUCT_TIMEZONE 1
#define GETTIMEOFDAY_GIVES_TZ 1
#define HAVE_STAT_ST_BLOCKS 1
#define HAVE_IOCTL 1
#define HAVE_TIOCGWINSZ 1
#define HAVE_TIOCGETD 1
#define HAVE_ALARM 1
#define HAVE_FORK 1
#define HAVE_FREXPF 1
#define HAVE_FREXPL 1
#define HAVE_GETHOSTNAME 1
#define HAVE_GETPWUID 1
#define HAVE_GETRUSAGE 1
#define HAVE_LSTAT 1
#define HAVE_RAND_R 1
#define HAVE_RANDOM 1
#define HAVE_SIGNAL 1
#define HAVE_LONGJMP 1
#define HAVE_SETJMP 1
#define HAVE_SIGLONGJMP 1
#define HAVE_SIGPROCMASK 1
#define HAVE_SNPRINTF 1
#define HAVE_SRANDOM 1
#define HAVE_STRDUP 1
#define HAVE_SYMLINK 1
#define HAVE_SYSTEM 1
#define HAVE_TMPFILE 1
#define HAVE_VASPRINTF 1
#define HAVE_WAITPID 1
#define HAVE_VSNPRINTF 1
#define VSNPRINTF_WORKS 1
#define HAVE_ATTRIBUTE 1
#define HAVE_C99_FUNC 1
#define HAVE_FUNCTION 1
#define HAVE_C99_DESIGNATED_INITIALIZER 1
#define PRINTF_LL_WIDTH "l"
#define SYSTEM_SCOPE_THREADS 1
#define CLEAR_MEMORY 1
#define HAVE_FILTER_SHUFFLE 1
#define HAVE_FILTER_FLETCHER32 1
#define HAVE_FILTER_NBIT 1
#define HAVE_FILTER_SCALEOFFSET 1
#define DEFAULT_VFD H5FD_SEC2
#define WANT_DCONV_EXCEPTION 1
#define WANT_DATA_ACCURACY 1
#define CONVERT_DENORMAL_FLOAT 1
#define LDOUBLE_TO_INTEGER_ACCURATE 1
#define LDOUBLE_TO_INTEGER_WORKS 1
#define INTEGER_TO_LDOUBLE_ACCURATE 1
#define ULONG_TO_FLOAT_ACCURATE 1
#define ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1
#define FP_TO_ULLONG_ACCURATE 1
#define LDOUBLE_TO_UINT_ACCURATE 1
#define ULLONG_TO_FP_CAST_WORKS 1
#define LLONG_TO_FP_CAST_WORKS 1
#define ULLONG_TO_LDOUBLE_PRECISION 1
#define FP_TO_INTEGER_OVERFLOW_WORKS 1
#define LDOUBLE_TO_LLONG_ACCURATE 1
#define LLONG_TO_LDOUBLE_CORRECT 1
#define INCLUDE_HL 1
#define HAVE_EMBEDDED_LIBINFO 1
#define HAVE_H5DUMP_PACKED_BITS 1
#define NO_ALIGNMENT_RESTRICTIONS 1

configure: exit 0

···

________________________________________
From: Hdf-forum <hdf-forum-bounces@lists.hdfgroup.org> on behalf of Matthieu Brucher <matthieu.brucher@gmail.com>
Sent: Thursday, October 2, 2014 4:55 PM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] Hdf5 compilation error

Hui,

You should put the actual compilation error, not the make errors that
appeared due to the original error.

Matthieu

2014-10-02 8:46 GMT+02:00 Naseema Beegum Shyju <Nshyju@masdar.ac.ae>:

Hi,

I am trying to compile hdf5 (hdf5-1.8.6) with zlib library (zlib-1.2.5). The
compiler in my

64 bit ubuntu machine (14.04) is gfortran/gcc version 4.8.2. I got the
following error while giving 'make'... Please help me.. I have attached log
file

make[2]: *** [h5tools_utils.lo] Error 1
make[2]: Leaving directory
`/home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/tools/lib'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/home/recrema/Naseema/BUILD_CHIMERE/hdf5-1.8.6/tools'
make: *** [all-recursive] Error 1

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--
Information System Engineer, Ph.D.
Blog: http://matt.eifelle.com
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_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5