HDF5 1.8.20 configuration failed - need help diagnosing cause


#1

I am trying to configure and build HDF5 library with CMake 3.10.1 ctest binary on a Windows 8.1 machine. When I try configuring I get the following output with failure to configure:

loading initial cache file C:/darwin_devel/HDF5_source/CMake-hdf5-1.8.20/CMake-hdf5-1.8.20\hdf5-1.8.20/config/cmake/cacheinit.cmake
-- The C compiler identification is MSVC 18.0.40629.0
-- The CXX compiler identification is MSVC 18.0.40629.0
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/bin/x86_amd64/cl.exe
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/bin/x86_amd64/cl.exe -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/bin/x86_amd64/cl.exe
-- Check for working CXX compiler: C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/bin/x86_amd64/cl.exe -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- SOVERSION: 10.3.1
-- SOVERSION_TOOLS: 10.0.6
-- SOVERSION_CXX: 15.0.0
-- SOVERSION_F: 10.0.5
-- SOVERSION_HL: 10.2.1
-- SOVERSION_HL_CXX: 11.1.1
-- SOVERSION_HL_F: 10.0.4
-- Check for STD namespace
-- Check for STD namespace - found
-- Looking for gethostname in ucb;
-- Looking for gethostname in ucb; - not found
-- Performing Other Test STDC_HEADERS - Success
-- Looking for include files windows.h, sys/file.h
-- Looking for include files windows.h, sys/file.h - not found
-- Looking for include files windows.h, sys/ioctl.h
-- Looking for include files windows.h, sys/ioctl.h - not found
-- Looking for include files windows.h, sys/resource.h
-- Looking for include files windows.h, sys/resource.h - not found
-- Looking for include files windows.h, sys/socket.h
-- Looking for include files windows.h, sys/socket.h - not found
-- Looking for 3 include files windows.h, ..., sys/time.h
-- Looking for 3 include files windows.h, ..., sys/time.h - not found
-- Looking for 4 include files windows.h, ..., features.h
-- Looking for 4 include files windows.h, ..., features.h - not found
-- Looking for 4 include files windows.h, ..., dirent.h
-- Looking for 4 include files windows.h, ..., dirent.h - not found
-- Looking for 4 include files windows.h, ..., setjmp.h
-- Looking for 4 include files windows.h, ..., setjmp.h - found
-- Looking for 6 include files windows.h, ..., stdint.h
-- Looking for 6 include files windows.h, ..., stdint.h - found
-- Looking for 7 include files windows.h, ..., unistd.h
-- Looking for 7 include files windows.h, ..., unistd.h - not found
-- Looking for C++ include stdint.h
-- Looking for C++ include stdint.h - found
-- Looking for 7 include files windows.h, ..., mach/mach_time.h
-- Looking for 7 include files windows.h, ..., mach/mach_time.h - not found
-- Looking for 7 include files windows.h, ..., io.h
-- Looking for 7 include files windows.h, ..., io.h - found
-- Looking for 8 include files windows.h, ..., winsock2.h
-- Looking for 8 include files windows.h, ..., winsock2.h - found
-- Looking for 9 include files windows.h, ..., sys/timeb.h
-- Looking for 9 include files windows.h, ..., sys/timeb.h - found
-- Looking for 10 include files windows.h, ..., globus/common.h
-- Looking for 10 include files windows.h, ..., globus/common.h - not found
-- Looking for 10 include files windows.h, ..., pdb.h
-- Looking for 10 include files windows.h, ..., pdb.h - not found
-- Looking for 10 include files windows.h, ..., pthread.h
-- Looking for 10 include files windows.h, ..., pthread.h - not found
-- Looking for 10 include files windows.h, ..., srbclient.h
-- Looking for 10 include files windows.h, ..., srbclient.h - not found
-- Looking for 10 include files windows.h, ..., string.h
-- Looking for 10 include files windows.h, ..., string.h - found
-- Looking for 11 include files windows.h, ..., strings.h
-- Looking for 11 include files windows.h, ..., strings.h - not found
-- Looking for 11 include files windows.h, ..., stdlib.h
-- Looking for 11 include files windows.h, ..., stdlib.h - found
-- Looking for 12 include files windows.h, ..., memory.h
-- Looking for 12 include files windows.h, ..., memory.h - found
-- Looking for 13 include files windows.h, ..., dlfcn.h
-- Looking for 13 include files windows.h, ..., dlfcn.h - not found
-- Looking for 13 include files windows.h, ..., inttypes.h
-- Looking for 13 include files windows.h, ..., inttypes.h - found
-- Looking for 14 include files windows.h, ..., netinet/in.h
-- Looking for 14 include files windows.h, ..., netinet/in.h - not found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of char
-- Check size of char - done
-- Check size of short
-- Check size of short - done
-- Check size of int
-- Check size of int - done
-- Check size of unsigned
-- Check size of unsigned - done
-- Check size of long
-- Check size of long - done
-- Check size of long long
-- Check size of long long - done
-- Check size of __int64
-- Check size of __int64 - done
-- Check size of float
-- Check size of float - done
-- Check size of double
-- Check size of double - done
-- Check size of long double
-- Check size of long double - done
-- Check size of int8_t
-- Check size of int8_t - done
-- Check size of uint8_t
-- Check size of uint8_t - done
-- Check size of int_least8_t
-- Check size of int_least8_t - done
-- Check size of uint_least8_t
-- Check size of uint_least8_t - done
-- Check size of int_fast8_t
-- Check size of int_fast8_t - done
-- Check size of uint_fast8_t
-- Check size of uint_fast8_t - done
-- Check size of int16_t
-- Check size of int16_t - done
-- Check size of uint16_t
-- Check size of uint16_t - done
-- Check size of int_least16_t
-- Check size of int_least16_t - done
-- Check size of uint_least16_t
-- Check size of uint_least16_t - done
-- Check size of int_fast16_t
-- Check size of int_fast16_t - done
-- Check size of uint_fast16_t
-- Check size of uint_fast16_t - done
-- Check size of int32_t
-- Check size of int32_t - done
-- Check size of uint32_t
-- Check size of uint32_t - done
-- Check size of int_least32_t
-- Check size of int_least32_t - done
-- Check size of uint_least32_t
-- Check size of uint_least32_t - done
-- Check size of int_fast32_t
-- Check size of int_fast32_t - done
-- Check size of uint_fast32_t
-- Check size of uint_fast32_t - done
-- Check size of int64_t
-- Check size of int64_t - done
-- Check size of uint64_t
-- Check size of uint64_t - done
-- Check size of int_least64_t
-- Check size of int_least64_t - done
-- Check size of uint_least64_t
-- Check size of uint_least64_t - done
-- Check size of int_fast64_t
-- Check size of int_fast64_t - done
-- Check size of uint_fast64_t
-- Check size of uint_fast64_t - done
-- Check size of size_t
-- Check size of size_t - done
-- Check size of ssize_t
-- Check size of ssize_t - failed
-- Check size of off_t
-- Check size of off_t - done
-- Check size of off64_t
-- Check size of off64_t - failed
-- Looking for 14 include files windows.h, ..., stdbool.h
-- Looking for 14 include files windows.h, ..., stdbool.h - found
-- Check size of _Bool
-- Check size of _Bool - done
-- Looking for alarm
-- Looking for alarm - not found
-- Looking for fcntl
-- Looking for fcntl - not found
-- Looking for flock
-- Looking for flock - not found
-- Looking for fork
-- Looking for fork - not found
-- Looking for frexpf
-- Looking for frexpf - not found
-- Looking for frexpl
-- Looking for frexpl - not found
-- Looking for getrusage
-- Looking for getrusage - not found
-- Looking for llround
-- Looking for llround - found
-- Looking for llroundf
-- Looking for llroundf - found
-- Looking for lround
-- Looking for lround - found
-- Looking for lroundf
-- Looking for lroundf - found
-- Looking for lstat
-- Looking for lstat - not found
-- Looking for rand_r
-- Looking for rand_r - not found
-- Looking for random
-- Looking for random - not found
-- Looking for round
-- Looking for round - found
-- Looking for roundf
-- Looking for roundf - found
-- Looking for setsysinfo
-- Looking for setsysinfo - not found
-- Looking for signal
-- Looking for signal - found
-- Looking for setjmp
-- Looking for setjmp - found
-- Looking for siglongjmp
-- Looking for siglongjmp - not found
-- Looking for sigsetjmp
-- Looking for sigsetjmp - not found
-- Looking for sigprocmask
-- Looking for sigprocmask - not found
-- Looking for snprintf
-- Looking for snprintf - not found
-- Looking for srandom
-- Looking for srandom - not found
-- Looking for strtoll
-- Looking for strtoll - found
-- Looking for strtoull
-- Looking for strtoull - found
-- Looking for symlink
-- Looking for symlink - not found
-- Looking for tmpfile
-- Looking for tmpfile - found
-- Looking for asprintf
-- Looking for asprintf - not found
-- Looking for vasprintf
-- Looking for vasprintf - not found
-- Looking for waitpid
-- Looking for waitpid - not found
-- Looking for vsnprintf
-- Looking for vsnprintf - found
-- Looking for sigsetjmp
-- Looking for sigsetjmp - not found
-- Performing CXX Test OLD_HEADER_FILENAME - Failed
-- Performing CXX Test H5_NO_NAMESPACE - Failed
-- Performing CXX Test H5_NO_STD - Failed
-- Performing CXX Test BOOL_NOTDEFINED - Failed
-- Performing CXX Test NO_STATIC_CAST - Failed
-- Performing CXX Test CXX_HAVE_OFFSETOF - Failed
-- Checking for InitOnceExecuteOnce:
-- Performing Test InitOnceExecuteOnce - Success
-- Performing Other Test HAVE_INLINE - Failed
-- Performing Other Test HAVE___INLINE__ - Failed
-- Performing Other Test HAVE___INLINE - Success
-- Checking for appropriate format for 64 bit long:
-- Checking for appropriate format for 64 bit long: found "I64"
-- Looking for difftime
-- Looking for difftime - found
-- Checking IF your system converts long double to (unsigned) long values with special algorithm... no
-- Checking IF your system can convert (unsigned) long to long double values with special algorithm... no
-- Checking IF correctly converting long double to (unsigned) long long values... yes
-- Checking IF correctly converting (unsigned) long long to long double values... yes
-- Checking IF alignment restrictions are strictly enforced... yes
-- Filter ZLIB is built
-- Filter ZLIB is ON
-- Filter SZIP is built
-- Filter SZIP is ON
-- The Fortran compiler identification is Intel 15.0.6.20151119
-- Check for working Fortran compiler: C:/Program Files (x86)/Intel/Composer XE 2015/bin/intel64/ifort.exe
-- Check for working Fortran compiler: C:/Program Files (x86)/Intel/Composer XE 2015/bin/intel64/ifort.exe -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Determine Intel Fortran Compiler Implicit Link Path
-- Determine Intel Fortran Compiler Implicit Link Path -- done
-- Checking whether C:/Program Files (x86)/Intel/Composer XE 2015/bin/intel64/ifort.exe supports Fortran 90
-- Checking whether C:/Program Files (x86)/Intel/Composer XE 2015/bin/intel64/ifort.exe supports Fortran 90 -- yes
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Failed to compile
CMake Error at config/cmake_ext_mod/HDFUseFortran.cmake:29 (string):
  string sub-command REGEX, mode MATCH needs at least 5 arguments total to
  command.
Call Stack (most recent call first):
  CMakeLists.txt:764 (include)

CMake Error at config/cmake_ext_mod/HDFUseFortran.cmake:33 (string):
  string sub-command REGEX, mode MATCH needs at least 5 arguments total to
  command.
Call Stack (most recent call first):
  CMakeLists.txt:764 (include)

-- Testing Fortran sizeof
-- Testing Fortran sizeof - OK
-- Testing Fortran c_sizeof
-- Testing Fortran c_sizeof - OK
-- Testing Fortran storage_size
-- Testing Fortran storage_size - OK
-- Testing Fortran ISO_FORTRAN_ENV
-- Testing Fortran ISO_FORTRAN_ENV - OK
-- Testing Fortran RealIsNotDouble
-- Testing Fortran RealIsNotDouble - OK
-- Testing Fortran iso_c_binding
-- Testing Fortran iso_c_binding - OK
-- Configuring incomplete, errors occurred!
See also "C:/darwin_devel/HDF5_source/CMake-hdf5-1.8.20/CMake-hdf5-1.8.20/build/CMakeFiles/CMakeOutput.log".
See also "C:/darwin_devel/HDF5_source/CMake-hdf5-1.8.20/CMake-hdf5-1.8.20/build/CMakeFiles/CMakeError.log".

I ran the ctest command as described on the website with minor edit to create FORTRAN libraries. My batch command is as follows:
"ctest -S HDF5config.cmake,FORTRAN_LIBRARIES=YES,BUILD_GENERATOR=VS201364 -C Release -VV -O hdf5.log"

The error (highlighted in red font above) seems to be due to some regex match command not being as expected. What am I doing wrong?

Thank you,
Vikram

···

--------------------------------------------------
Computational Materials Integrity
Materials Engineering Department
Southwest Research Institute
210-522-2576


#2

Vikram,

This looks like the same issue I ran into. Are you trying to build static libraries? If so, you either need to downgrade your to CMake 3.8.2 or use the attached patch (HDFFV-10334).

https://cmake.org/pipermail/cmake/2017-December/066736.html

Attached is a patch (fix-windows-static-fortran.diff) to fix compiling static Fortran libraries on Windows. When you replace
UserMacros.cmake with config\cmake\UserMacros\Windows_MT.cmake. The macro gets called before Fortran is enabled.
So, all the Fortran compile flags are empty. The macro needs to be invoked after enable_language(Fortran).

With camke < 3.9 you could still compile the code with the mixed runtime libraries. With cmake > 3.9 the linking will
fail for FortranCInterface and never give you a sln/nmake/ninja config.

[46/46] Linking Fortran executable FortranCInterface.exe
FAILED: FortranCInterface.exe
cmd.exe /C "cd . && "C:\Program Files\CMake\bin\cmake.exe" -E vs_link_exe --intdir=CMakeFiles\FortranCInterface.dir --manifests -- xilink /nologo CMakeFiles\FortranCInterface.dir\main.F.obj CMakeFiles\FortranCInterface.dir\call_sub.f.obj CMakeFiles\FortranCInterface.dir\call_mod.f90.obj /out:FortranCInterface.exe /implib:FortranCInterface.lib /pdb:FortranCInterface.pdb /version:0.0 /machine:x64 /INCREMENTAL:NO /subsystem:console symbols.lib myfort.lib user32.lib && cd ."
xilink: executing 'link'
LIBCMT.lib(winapisupp.obj) : error LNK2005: __crtSetUnhandledExceptionFilter already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(crtheap.obj) : error LNK2005: _calloc_crt already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: _amsg_exit already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: _cexit already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: _exit already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: _initterm_e already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(crt0dat.obj) : error LNK2005: exit already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(mlock.obj) : error LNK2005: _lock already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(mlock.obj) : error LNK2005: _unlock already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(winxfltr.obj) : error LNK2005: _XcptFilter already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(wsetloca.obj) : error LNK2005: _configthreadlocale already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(hooks.obj) : error LNK2005: "void __cdecl terminate(void)" (?terminate@@YAXXZ) already defined in MSVCRT.lib(MSVCR120.dll)
LIBCMT.lib(crt0init.obj) : error LNK2005: __xi_a already defined in MSVCRT.lib(cinitexe.obj)
LIBCMT.lib(crt0init.obj) : error LNK2005: __xi_z already defined in MSVCRT.lib(cinitexe.obj)
LIBCMT.lib(crt0init.obj) : error LNK2005: __xc_a already defined in MSVCRT.lib(cinitexe.obj)
LIBCMT.lib(crt0init.obj) : error LNK2005: __xc_z already defined in MSVCRT.lib(cinitexe.obj)
LIBCMT.lib(errmode.obj) : error LNK2005: __set_app_type already defined in MSVCRT.lib(MSVCR120.dll)
LINK : warning LNK4098: defaultlib 'MSVCRT' conflicts with use of other libs; use /NODEFAULTLIB:library
LINK : warning LNK4098: defaultlib 'LIBCMT' conflicts with use of other libs; use /NODEFAULTLIB:library
FortranCInterface.exe : fatal error LNK1169: one or more multiply defined symbols found
LINK failed. with 1169

--Christian

fix-windows-static-fortran.diff (927 Bytes)

···

From: Hdf-forum <hdf-forum-bounces@lists.hdfgroup.org> on behalf of "Bhamidipati, Vikram" <vikram.bhamidipati@swri.org>
Reply-To: HDF Users Discussion List <hdf-forum@lists.hdfgroup.org>
Date: Thursday, January 4, 2018 at 6:49 PM
To: "hdf-forum@lists.hdfgroup.org" <hdf-forum@lists.hdfgroup.org>
Subject: [Hdf-forum] HDF5 1.8.20 configuration failed - need help diagnosing cause

I am trying to configure and build HDF5 library with CMake 3.10.1 ctest binary on a Windows 8.1 machine. When I try configuring I get the following output with failure to configure:

loading initial cache file C:/darwin_devel/HDF5_source/CMake-hdf5-1.8.20/CMake-hdf5-1.8.20\hdf5-1.8.20/config/cmake/cacheinit.cmake
-- The C compiler identification is MSVC 18.0.40629.0
-- The CXX compiler identification is MSVC 18.0.40629.0
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/bin/x86_amd64/cl.exe
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/bin/x86_amd64/cl.exe -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/bin/x86_amd64/cl.exe
-- Check for working CXX compiler: C:/Program Files (x86)/Microsoft Visual Studio 12.0/VC/bin/x86_amd64/cl.exe -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- SOVERSION: 10.3.1
-- SOVERSION_TOOLS: 10.0.6
-- SOVERSION_CXX: 15.0.0
-- SOVERSION_F: 10.0.5
-- SOVERSION_HL: 10.2.1
-- SOVERSION_HL_CXX: 11.1.1
-- SOVERSION_HL_F: 10.0.4
-- Check for STD namespace
-- Check for STD namespace - found
-- Looking for gethostname in ucb;
-- Looking for gethostname in ucb; - not found
-- Performing Other Test STDC_HEADERS - Success
-- Looking for include files windows.h, sys/file.h
-- Looking for include files windows.h, sys/file.h - not found
-- Looking for include files windows.h, sys/ioctl.h
-- Looking for include files windows.h, sys/ioctl.h - not found
-- Looking for include files windows.h, sys/resource.h
-- Looking for include files windows.h, sys/resource.h - not found
-- Looking for include files windows.h, sys/socket.h
-- Looking for include files windows.h, sys/socket.h - not found
-- Looking for 3 include files windows.h, ..., sys/time.h
-- Looking for 3 include files windows.h, ..., sys/time.h - not found
-- Looking for 4 include files windows.h, ..., features.h
-- Looking for 4 include files windows.h, ..., features.h - not found
-- Looking for 4 include files windows.h, ..., dirent.h
-- Looking for 4 include files windows.h, ..., dirent.h - not found
-- Looking for 4 include files windows.h, ..., setjmp.h
-- Looking for 4 include files windows.h, ..., setjmp.h - found
-- Looking for 6 include files windows.h, ..., stdint.h
-- Looking for 6 include files windows.h, ..., stdint.h - found
-- Looking for 7 include files windows.h, ..., unistd.h
-- Looking for 7 include files windows.h, ..., unistd.h - not found
-- Looking for C++ include stdint.h
-- Looking for C++ include stdint.h - found
-- Looking for 7 include files windows.h, ..., mach/mach_time.h
-- Looking for 7 include files windows.h, ..., mach/mach_time.h - not found
-- Looking for 7 include files windows.h, ..., io.h
-- Looking for 7 include files windows.h, ..., io.h - found
-- Looking for 8 include files windows.h, ..., winsock2.h
-- Looking for 8 include files windows.h, ..., winsock2.h - found
-- Looking for 9 include files windows.h, ..., sys/timeb.h
-- Looking for 9 include files windows.h, ..., sys/timeb.h - found
-- Looking for 10 include files windows.h, ..., globus/common.h
-- Looking for 10 include files windows.h, ..., globus/common.h - not found
-- Looking for 10 include files windows.h, ..., pdb.h
-- Looking for 10 include files windows.h, ..., pdb.h - not found
-- Looking for 10 include files windows.h, ..., pthread.h
-- Looking for 10 include files windows.h, ..., pthread.h - not found
-- Looking for 10 include files windows.h, ..., srbclient.h
-- Looking for 10 include files windows.h, ..., srbclient.h - not found
-- Looking for 10 include files windows.h, ..., string.h
-- Looking for 10 include files windows.h, ..., string.h - found
-- Looking for 11 include files windows.h, ..., strings.h
-- Looking for 11 include files windows.h, ..., strings.h - not found
-- Looking for 11 include files windows.h, ..., stdlib.h
-- Looking for 11 include files windows.h, ..., stdlib.h - found
-- Looking for 12 include files windows.h, ..., memory.h
-- Looking for 12 include files windows.h, ..., memory.h - found
-- Looking for 13 include files windows.h, ..., dlfcn.h
-- Looking for 13 include files windows.h, ..., dlfcn.h - not found
-- Looking for 13 include files windows.h, ..., inttypes.h
-- Looking for 13 include files windows.h, ..., inttypes.h - found
-- Looking for 14 include files windows.h, ..., netinet/in.h
-- Looking for 14 include files windows.h, ..., netinet/in.h - not found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of char
-- Check size of char - done
-- Check size of short
-- Check size of short - done
-- Check size of int
-- Check size of int - done
-- Check size of unsigned
-- Check size of unsigned - done
-- Check size of long
-- Check size of long - done
-- Check size of long long
-- Check size of long long - done
-- Check size of __int64
-- Check size of __int64 - done
-- Check size of float
-- Check size of float - done
-- Check size of double
-- Check size of double - done
-- Check size of long double
-- Check size of long double - done
-- Check size of int8_t
-- Check size of int8_t - done
-- Check size of uint8_t
-- Check size of uint8_t - done
-- Check size of int_least8_t
-- Check size of int_least8_t - done
-- Check size of uint_least8_t
-- Check size of uint_least8_t - done
-- Check size of int_fast8_t
-- Check size of int_fast8_t - done
-- Check size of uint_fast8_t
-- Check size of uint_fast8_t - done
-- Check size of int16_t
-- Check size of int16_t - done
-- Check size of uint16_t
-- Check size of uint16_t - done
-- Check size of int_least16_t
-- Check size of int_least16_t - done
-- Check size of uint_least16_t
-- Check size of uint_least16_t - done
-- Check size of int_fast16_t
-- Check size of int_fast16_t - done
-- Check size of uint_fast16_t
-- Check size of uint_fast16_t - done
-- Check size of int32_t
-- Check size of int32_t - done
-- Check size of uint32_t
-- Check size of uint32_t - done
-- Check size of int_least32_t
-- Check size of int_least32_t - done
-- Check size of uint_least32_t
-- Check size of uint_least32_t - done
-- Check size of int_fast32_t
-- Check size of int_fast32_t - done
-- Check size of uint_fast32_t
-- Check size of uint_fast32_t - done
-- Check size of int64_t
-- Check size of int64_t - done
-- Check size of uint64_t
-- Check size of uint64_t - done
-- Check size of int_least64_t
-- Check size of int_least64_t - done
-- Check size of uint_least64_t
-- Check size of uint_least64_t - done
-- Check size of int_fast64_t
-- Check size of int_fast64_t - done
-- Check size of uint_fast64_t
-- Check size of uint_fast64_t - done
-- Check size of size_t
-- Check size of size_t - done
-- Check size of ssize_t
-- Check size of ssize_t - failed
-- Check size of off_t
-- Check size of off_t - done
-- Check size of off64_t
-- Check size of off64_t - failed
-- Looking for 14 include files windows.h, ..., stdbool.h
-- Looking for 14 include files windows.h, ..., stdbool.h - found
-- Check size of _Bool
-- Check size of _Bool - done
-- Looking for alarm
-- Looking for alarm - not found
-- Looking for fcntl
-- Looking for fcntl - not found
-- Looking for flock
-- Looking for flock - not found
-- Looking for fork
-- Looking for fork - not found
-- Looking for frexpf
-- Looking for frexpf - not found
-- Looking for frexpl
-- Looking for frexpl - not found
-- Looking for getrusage
-- Looking for getrusage - not found
-- Looking for llround
-- Looking for llround - found
-- Looking for llroundf
-- Looking for llroundf - found
-- Looking for lround
-- Looking for lround - found
-- Looking for lroundf
-- Looking for lroundf - found
-- Looking for lstat
-- Looking for lstat - not found
-- Looking for rand_r
-- Looking for rand_r - not found
-- Looking for random
-- Looking for random - not found
-- Looking for round
-- Looking for round - found
-- Looking for roundf
-- Looking for roundf - found
-- Looking for setsysinfo
-- Looking for setsysinfo - not found
-- Looking for signal
-- Looking for signal - found
-- Looking for setjmp
-- Looking for setjmp - found
-- Looking for siglongjmp
-- Looking for siglongjmp - not found
-- Looking for sigsetjmp
-- Looking for sigsetjmp - not found
-- Looking for sigprocmask
-- Looking for sigprocmask - not found
-- Looking for snprintf
-- Looking for snprintf - not found
-- Looking for srandom
-- Looking for srandom - not found
-- Looking for strtoll
-- Looking for strtoll - found
-- Looking for strtoull
-- Looking for strtoull - found
-- Looking for symlink
-- Looking for symlink - not found
-- Looking for tmpfile
-- Looking for tmpfile - found
-- Looking for asprintf
-- Looking for asprintf - not found
-- Looking for vasprintf
-- Looking for vasprintf - not found
-- Looking for waitpid
-- Looking for waitpid - not found
-- Looking for vsnprintf
-- Looking for vsnprintf - found
-- Looking for sigsetjmp
-- Looking for sigsetjmp - not found
-- Performing CXX Test OLD_HEADER_FILENAME - Failed
-- Performing CXX Test H5_NO_NAMESPACE - Failed
-- Performing CXX Test H5_NO_STD - Failed
-- Performing CXX Test BOOL_NOTDEFINED - Failed
-- Performing CXX Test NO_STATIC_CAST - Failed
-- Performing CXX Test CXX_HAVE_OFFSETOF - Failed
-- Checking for InitOnceExecuteOnce:
-- Performing Test InitOnceExecuteOnce - Success
-- Performing Other Test HAVE_INLINE - Failed
-- Performing Other Test HAVE___INLINE__ - Failed
-- Performing Other Test HAVE___INLINE - Success
-- Checking for appropriate format for 64 bit long:
-- Checking for appropriate format for 64 bit long: found "I64"
-- Looking for difftime
-- Looking for difftime - found
-- Checking IF your system converts long double to (unsigned) long values with special algorithm... no
-- Checking IF your system can convert (unsigned) long to long double values with special algorithm... no
-- Checking IF correctly converting long double to (unsigned) long long values... yes
-- Checking IF correctly converting (unsigned) long long to long double values... yes
-- Checking IF alignment restrictions are strictly enforced... yes
-- Filter ZLIB is built
-- Filter ZLIB is ON
-- Filter SZIP is built
-- Filter SZIP is ON
-- The Fortran compiler identification is Intel 15.0.6.20151119
-- Check for working Fortran compiler: C:/Program Files (x86)/Intel/Composer XE 2015/bin/intel64/ifort.exe
-- Check for working Fortran compiler: C:/Program Files (x86)/Intel/Composer XE 2015/bin/intel64/ifort.exe -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Determine Intel Fortran Compiler Implicit Link Path
-- Determine Intel Fortran Compiler Implicit Link Path -- done
-- Checking whether C:/Program Files (x86)/Intel/Composer XE 2015/bin/intel64/ifort.exe supports Fortran 90
-- Checking whether C:/Program Files (x86)/Intel/Composer XE 2015/bin/intel64/ifort.exe supports Fortran 90 -- yes
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Failed to compile
CMake Error at config/cmake_ext_mod/HDFUseFortran.cmake:29 (string):
  string sub-command REGEX, mode MATCH needs at least 5 arguments total to
  command.
Call Stack (most recent call first):
  CMakeLists.txt:764 (include)

CMake Error at config/cmake_ext_mod/HDFUseFortran.cmake:33 (string):
  string sub-command REGEX, mode MATCH needs at least 5 arguments total to
  command.
Call Stack (most recent call first):
  CMakeLists.txt:764 (include)

-- Testing Fortran sizeof
-- Testing Fortran sizeof - OK
-- Testing Fortran c_sizeof
-- Testing Fortran c_sizeof - OK
-- Testing Fortran storage_size
-- Testing Fortran storage_size - OK
-- Testing Fortran ISO_FORTRAN_ENV
-- Testing Fortran ISO_FORTRAN_ENV - OK
-- Testing Fortran RealIsNotDouble
-- Testing Fortran RealIsNotDouble - OK
-- Testing Fortran iso_c_binding
-- Testing Fortran iso_c_binding - OK
-- Configuring incomplete, errors occurred!
See also "C:/darwin_devel/HDF5_source/CMake-hdf5-1.8.20/CMake-hdf5-1.8.20/build/CMakeFiles/CMakeOutput.log".
See also "C:/darwin_devel/HDF5_source/CMake-hdf5-1.8.20/CMake-hdf5-1.8.20/build/CMakeFiles/CMakeError.log".

I ran the ctest command as described on the website with minor edit to create FORTRAN libraries. My batch command is as follows:
“ctest -S HDF5config.cmake,FORTRAN_LIBRARIES=YES,BUILD_GENERATOR=VS201364 -C Release -VV -O hdf5.log”

The error (highlighted in red font above) seems to be due to some regex match command not being as expected. What am I doing wrong?

Thank you,
Vikram
--------------------------------------------------
Computational Materials Integrity
Materials Engineering Department
Southwest Research Institute
210-522-2576

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#3

Christian,

Thanks. I reverted to CMake 3.8.2 and was able to build the static libraries.

Vikram