HDF5 1.8.12 with OS X 10.10 Yosemite

Hdf-forum archives
1

Is there any on-going testing of the latest HDF5 version (both 1.8.12 and the upcoming 1.8.14) on OS X 10.10 Yosemite? I know the new release is coming up and I wanted to make sure any bugs might be able to be handled when 1.8.14 is released?

I realize 10.10 has only been out for a few days now but I figured I would start the conversation now rather than _after_ 1.8.14 has been released.

Thanks
Mike Jackson

2

I could setup a dashboard, but since no one seems to be doing anything to make the existing dashboards greener, I have not bothered.

Do the folks at HDF Group look at the dashboards? Do you want a 10.10 dashboard?

Cheers,

···

On Wed, 22 Oct 2014 11:51:01 -0400, Michael Jackson said:

Is there any on-going testing of the latest HDF5 version (both 1.8.12
and the upcoming 1.8.14) on OS X 10.10 Yosemite? I know the new release
is coming up and I wanted to make sure any bugs might be able to be
handled when 1.8.14 is released?

I realize 10.10 has only been out for a few days now but I figured I
would start the conversation now rather than _after_ 1.8.14 has been
released.

--
____________________________________________________________
Sean McBride, B. Eng sean@rogue-research.com
Rogue Research www.rogue-research.com
Mac Software Developer Montréal, Québec, Canada

3

Hi Mike,

Yosemite will not be in the v1.8.14 release supported platform.
We plan to support it in the future releases.

-Albert Cheng
THG staff

···

On Oct 22, 2014, at 10:51 AM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Is there any on-going testing of the latest HDF5 version (both 1.8.12 and the upcoming 1.8.14) on OS X 10.10 Yosemite? I know the new release is coming up and I wanted to make sure any bugs might be able to be handled when 1.8.14 is released?

I realize 10.10 has only been out for a few days now but I figured I would start the conversation now rather than _after_ 1.8.14 has been released.

Thanks
Mike Jackson
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

4

Um, Do we know if it will even compile?

Not supporting it and not compiling are 2 different things in my mind. I just need to know if it is not compiling for some reason. I have new developers who are going to get new Macs which dictates they will get OS X 10.10. If HDF5 does not compile then I am need to come up with Plan B.

Thanks
Mike Jackson.

···

On Oct 22, 2014, at 3:41 PM, Albert Cheng <acheng@hdfgroup.org> wrote:

Hi Mike,

Yosemite will not be in the v1.8.14 release supported platform.
We plan to support it in the future releases.

-Albert Cheng
THG staff

On Oct 22, 2014, at 10:51 AM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Is there any on-going testing of the latest HDF5 version (both 1.8.12 and the upcoming 1.8.14) on OS X 10.10 Yosemite? I know the new release is coming up and I wanted to make sure any bugs might be able to be handled when 1.8.14 is released?

I realize 10.10 has only been out for a few days now but I figured I would start the conversation now rather than _after_ 1.8.14 has been released.

Thanks
Mike Jackson
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

5

Mike,

Just for you :slight_smile: I've done a build and submitted it to the dashboard:

<http://cdash.hdfgroup.uiuc.edu/buildSummary.php?buildid=12949>

but why don't you install 10.10 in a VM or partition and try it. Easy, no?

Cheers,

···

On Wed, 22 Oct 2014 15:46:22 -0400, Michael Jackson said:

Um, Do we know if it will even compile?

Not supporting it and not compiling are 2 different things in my mind. I
just need to know if it is not compiling for some reason. I have new
developers who are going to get new Macs which dictates they will get OS
X 10.10. If HDF5 does not compile then I am need to come up with Plan B.

--
____________________________________________________________
Sean McBride, B. Eng sean@rogue-research.com
Rogue Research www.rogue-research.com
Mac Software Developer Montréal, Québec, Canada

6

Yep,
Downloading 10.10 now..

Thanks for the quick dashboard. Looks like it will be solid to go..

Thanks
Mike Jackson

···

On Oct 22, 2014, at 4:38 PM, "Sean McBride" <sean@rogue-research.com> wrote:

On Wed, 22 Oct 2014 15:46:22 -0400, Michael Jackson said:

Um, Do we know if it will even compile?

Not supporting it and not compiling are 2 different things in my mind. I
just need to know if it is not compiling for some reason. I have new
developers who are going to get new Macs which dictates they will get OS
X 10.10. If HDF5 does not compile then I am need to come up with Plan B.

Mike,

Just for you :slight_smile: I've done a build and submitted it to the dashboard:

<http://cdash.hdfgroup.uiuc.edu/buildSummary.php?buildid=12949>

but why don't you install 10.10 in a VM or partition and try it. Easy, no?

Cheers,

--
____________________________________________________________
Sean McBride, B. Eng sean@rogue-research.com
Rogue Research www.rogue-research.com
Mac Software Developer Montréal, Québec, Canada

7

We don’t have Yosemite system installed yet. So, don’t know if it will compile or not.

From past experience, it is likely to compile and pass all tests. One may need to adjust

the optimization level. (For example, -O3 may have some glitches while -O0 works.)

BTW, the previous optimization issues do not apply to the latest version of clang compilers
for 10.8 and 10.9 systems.

-Albert Cheng
THG staff

···

On Oct 22, 2014, at 2:46 PM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Um, Do we know if it will even compile?

Not supporting it and not compiling are 2 different things in my mind. I just need to know if it is not compiling for some reason. I have new developers who are going to get new Macs which dictates they will get OS X 10.10. If HDF5 does not compile then I am need to come up with Plan B.

Thanks
Mike Jackson.

On Oct 22, 2014, at 3:41 PM, Albert Cheng <acheng@hdfgroup.org> wrote:

Hi Mike,

Yosemite will not be in the v1.8.14 release supported platform.
We plan to support it in the future releases.

-Albert Cheng
THG staff

On Oct 22, 2014, at 10:51 AM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Is there any on-going testing of the latest HDF5 version (both 1.8.12 and the upcoming 1.8.14) on OS X 10.10 Yosemite? I know the new release is coming up and I wanted to make sure any bugs might be able to be handled when 1.8.14 is released?

I realize 10.10 has only been out for a few days now but I figured I would start the conversation now rather than _after_ 1.8.14 has been released.

Thanks
Mike Jackson
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

8

It builds and passes tests using the autotools on Yosemite. I seriously doubt that CMake will make much of a difference.

My Mac does not have Fortran, so I did not test that.

Dana

···

-----Original Message-----
From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf Of
Michael Jackson
Sent: Wednesday, October 22, 2014 5:08 PM
To: Sean McBride
Cc: HDF Users Discussion List
Subject: Re: [Hdf-forum] HDF5 1.8.12 with OS X 10.10 Yosemite

Yep,
Downloading 10.10 now..

Thanks for the quick dashboard. Looks like it will be solid to go..

Thanks
Mike Jackson

On Oct 22, 2014, at 4:38 PM, "Sean McBride" <sean@rogue-research.com> > wrote:

> On Wed, 22 Oct 2014 15:46:22 -0400, Michael Jackson said:
>
>> Um, Do we know if it will even compile?
>>
>> Not supporting it and not compiling are 2 different things in my
>> mind. I just need to know if it is not compiling for some reason. I
>> have new developers who are going to get new Macs which dictates they
>> will get OS X 10.10. If HDF5 does not compile then I am need to come up
with Plan B.
>
> Mike,
>
> Just for you :slight_smile: I've done a build and submitted it to the dashboard:
>
> <http://cdash.hdfgroup.uiuc.edu/buildSummary.php?buildid=12949>
>
> but why don't you install 10.10 in a VM or partition and try it. Easy,
no?
>
> Cheers,
>
> --
> ____________________________________________________________
> Sean McBride, B. Eng sean@rogue-research.com
> Rogue Research www.rogue-research.com
> Mac Software Developer Montréal, Québec, Canada
>
>

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-
forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

9

Hello all,

HDF5 1.8.13 works fine on Yosemite for me.

As a side note: even if you don't have a particular version of Mac OS
X installed, searching MacPorts tickets should give you an idea of
whether a program or a library works on Mac OS X. There is exactly one
open MacPorts ticket for the hdf5 port and it is not related to
Yosemite.

···

--
Constantine

On Wed, Oct 22, 2014 at 12:12 PM, Albert Cheng <acheng@hdfgroup.org> wrote:

We don’t have Yosemite system installed yet. So, don’t know if it will compile or not.

From past experience, it is likely to compile and pass all tests. One may need to adjust
the optimization level. (For example, -O3 may have some glitches while -O0 works.)

BTW, the previous optimization issues do not apply to the latest version of clang compilers
for 10.8 and 10.9 systems.

-Albert Cheng
THG staff

On Oct 22, 2014, at 2:46 PM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Um, Do we know if it will even compile?

Not supporting it and not compiling are 2 different things in my mind. I just need to know if it is not compiling for some reason. I have new developers who are going to get new Macs which dictates they will get OS X 10.10. If HDF5 does not compile then I am need to come up with Plan B.

Thanks
Mike Jackson.

On Oct 22, 2014, at 3:41 PM, Albert Cheng <acheng@hdfgroup.org> wrote:

Hi Mike,

Yosemite will not be in the v1.8.14 release supported platform.
We plan to support it in the future releases.

-Albert Cheng
THG staff

On Oct 22, 2014, at 10:51 AM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Is there any on-going testing of the latest HDF5 version (both 1.8.12 and the upcoming 1.8.14) on OS X 10.10 Yosemite? I know the new release is coming up and I wanted to make sure any bugs might be able to be handled when 1.8.14 is released?

I realize 10.10 has only been out for a few days now but I figured I would start the conversation now rather than _after_ 1.8.14 has been released.

Thanks
Mike Jackson
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

10

That's why there's a community dashboard:
<http://cdash.hdfgroup.uiuc.edu/index.php?project=HDF518>

But if it's ignored, and none of the issues on there get fixed, people understandably loose motivation to contribute. :frowning:

Cheers,

···

On Wed, 22 Oct 2014 20:12:42 +0000, Albert Cheng said:

We don’t have Yosemite system installed yet. So, don’t know if it will
compile or not.

--
____________________________________________________________
Sean McBride, B. Eng sean@rogue-research.com
Rogue Research www.rogue-research.com
Mac Software Developer Montréal, Québec, Canada

11

I have also perform a build and run the test on Yosemite (Released) with
XCode 6.1 i.e. the 10.10.sdk

All the test passed.

The configuration log indicates that it has picked up clang as the compiler
to build the source.

Cheers

···

On 22 October 2014 18:02, Dana Robinson <derobins@hdfgroup.org> wrote:

It builds and passes tests using the autotools on Yosemite. I seriously
doubt that CMake will make much of a difference.

My Mac does not have Fortran, so I did not test that.

Dana

> -----Original Message-----
> From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf
Of
> Michael Jackson
> Sent: Wednesday, October 22, 2014 5:08 PM
> To: Sean McBride
> Cc: HDF Users Discussion List
> Subject: Re: [Hdf-forum] HDF5 1.8.12 with OS X 10.10 Yosemite
>
> Yep,
> Downloading 10.10 now..
>
> Thanks for the quick dashboard. Looks like it will be solid to go..
>
> Thanks
> Mike Jackson
>
> On Oct 22, 2014, at 4:38 PM, "Sean McBride" <sean@rogue-research.com> > > wrote:
>
> > On Wed, 22 Oct 2014 15:46:22 -0400, Michael Jackson said:
> >
> >> Um, Do we know if it will even compile?
> >>
> >> Not supporting it and not compiling are 2 different things in my
> >> mind. I just need to know if it is not compiling for some reason. I
> >> have new developers who are going to get new Macs which dictates they
> >> will get OS X 10.10. If HDF5 does not compile then I am need to come
up
> with Plan B.
> >
> > Mike,
> >
> > Just for you :slight_smile: I've done a build and submitted it to the dashboard:
> >
> > <http://cdash.hdfgroup.uiuc.edu/buildSummary.php?buildid=12949>
> >
> > but why don't you install 10.10 in a VM or partition and try it. Easy,
> no?
> >
> > Cheers,
> >
> > --
> > ____________________________________________________________
> > Sean McBride, B. Eng sean@rogue-research.com
> > Rogue Research www.rogue-research.com
> > Mac Software Developer Montréal, Québec, Canada
> >
> >
>
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@lists.hdfgroup.org
> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-
> forum_lists.hdfgroup.org
> Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org

http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

--
Nicholas Yue
Graphics - Arnold, Alembic, RenderMan, OpenGL, HDF5
Custom Dev - C++ porting, OSX, Linux, Windows
http://au.linkedin.com/in/nicholasyue

12

We don�t have Yosemite system installed yet. So, don�t know if it will compile or not.

From past experience, it is likely to compile and pass all tests. One may need to adjust
the optimization level. (For example, -O3 may have some glitches while -O0 works.)

Folks in OpenMPI and MPICH land have been having problems with libtool. It parses "10.10" as the much older "10.1" and uses some decade-old workaround that in 2014 is not good:

http://lists.gnu.org/archive/html/libtool-patches/2014-09/msg00002.html

but it sounds like that's not a problem for HDF5 ? good!

==rob

···

On 10/22/2014 03:12 PM, Albert Cheng wrote:

BTW, the previous optimization issues do not apply to the latest version of clang compilers
for 10.8 and 10.9 systems.

-Albert Cheng
THG staff

On Oct 22, 2014, at 2:46 PM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Um, Do we know if it will even compile?

Not supporting it and not compiling are 2 different things in my mind. I just need to know if it is not compiling for some reason. I have new developers who are going to get new Macs which dictates they will get OS X 10.10. If HDF5 does not compile then I am need to come up with Plan B.

Thanks
Mike Jackson.

On Oct 22, 2014, at 3:41 PM, Albert Cheng <acheng@hdfgroup.org> wrote:

Hi Mike,

Yosemite will not be in the v1.8.14 release supported platform.
We plan to support it in the future releases.

-Albert Cheng
THG staff

On Oct 22, 2014, at 10:51 AM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Is there any on-going testing of the latest HDF5 version (both 1.8.12 and the upcoming 1.8.14) on OS X 10.10 Yosemite? I know the new release is coming up and I wanted to make sure any bugs might be able to be handled when 1.8.14 is released?

I realize 10.10 has only been out for a few days now but I figured I would start the conversation now rather than _after_ 1.8.14 has been released.

Thanks
Mike Jackson
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

--
Rob Latham
Mathematics and Computer Science Division
Argonne National Lab, IL USA

13

Hi Rob,

Sorry I did not read your post before. I checked that our version of libtool has the same bug in it.
I will watch this one out when I get my hands on a 10.10 system.
Thanks.

-Albert

···

On Oct 27, 2014, at 2:48 PM, Rob Latham <robl@mcs.anl.gov> wrote:

On 10/22/2014 03:12 PM, Albert Cheng wrote:

We don’t have Yosemite system installed yet. So, don’t know if it will compile or not.

From past experience, it is likely to compile and pass all tests. One may need to adjust
the optimization level. (For example, -O3 may have some glitches while -O0 works.)

Folks in OpenMPI and MPICH land have been having problems with libtool. It parses "10.10" as the much older "10.1" and uses some decade-old workaround that in 2014 is not good:

http://lists.gnu.org/archive/html/libtool-patches/2014-09/msg00002.html

but it sounds like that's not a problem for HDF5 ? good!

==rob

BTW, the previous optimization issues do not apply to the latest version of clang compilers
for 10.8 and 10.9 systems.

-Albert Cheng
THG staff

On Oct 22, 2014, at 2:46 PM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Um, Do we know if it will even compile?

Not supporting it and not compiling are 2 different things in my mind. I just need to know if it is not compiling for some reason. I have new developers who are going to get new Macs which dictates they will get OS X 10.10. If HDF5 does not compile then I am need to come up with Plan B.

Thanks
Mike Jackson.

On Oct 22, 2014, at 3:41 PM, Albert Cheng <acheng@hdfgroup.org> wrote:

Hi Mike,

Yosemite will not be in the v1.8.14 release supported platform.
We plan to support it in the future releases.

-Albert Cheng
THG staff

On Oct 22, 2014, at 10:51 AM, Michael Jackson <mike.jackson@bluequartz.net> wrote:

Is there any on-going testing of the latest HDF5 version (both 1.8.12 and the upcoming 1.8.14) on OS X 10.10 Yosemite? I know the new release is coming up and I wanted to make sure any bugs might be able to be handled when 1.8.14 is released?

I realize 10.10 has only been out for a few days now but I figured I would start the conversation now rather than _after_ 1.8.14 has been released.

Thanks
Mike Jackson
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5

--
Rob Latham
Mathematics and Computer Science Division
Argonne National Lab, IL USA

_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5