HDF5 1.12.1 cmpdsetr test (part of make check) fails

HDF5 Library
1

Test times out. All other parallel tests pass. Happens when compiling with mpich 3.4.2 on Mac OS X 12.1. This seems to be a timeout problem similar to: How long should 'make check' take?

Also submitted as a private Jira ticket #SUPPORT-1662

Output:
Testing – compressed dataset collective read (cmpdsetr)
Testing – compressed dataset collective read (cmpdsetr)
Testing – compressed dataset collective read (cmpdsetr)
Testing – compressed dataset collective read (cmpdsetr)
Testing – compressed dataset collective read (cmpdsetr)
Testing – compressed dataset collective read (cmpdsetr)

===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 89591 RUNNING AT wireless-10-104-116-244.umd.edu
= EXIT CODE: 14
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES

YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Alarm clock: 14 (signal 14)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
1201.75 real 7136.49 user 26.74 sys

2

Thanks for the report. We are aware of the issue:
https://jira.hdfgroup.org/browse/HDFFV-10672?jql=text%20~%20"cmpdsetr"

Odds are, your application should still work.

3

Thank you for the quick reply. As far as I can tell, application seems to work.

I don’t think I have access to the ticket you’re linking to (search comes up empty when I click the link). Are there any patches suggested? Also happy to be a tester.

4

Sorry, correct link,

https://jira.hdfgroup.org/browse/HDFFV-10672

No patches as of yet. We will update the issue as we look into it.

It also failed for me for gcc-11, mpich 4 on 12.2