I am not sure but I am guessing the problem is that it found gnu C
compiler for C code but you told it to use intel compiler for fortran
code (e.g. FC=ifort).
Perhaps, if you also told it to use intel C and C++ compilers, using...
--
Mark C. Miller, Lawrence Livermore National Laboratory
================!!LLNL BUSINESS ONLY!!================ miller86@llnl.gov urgent: miller86@pager.llnl.gov
T:8-6 (925)-423-5901 M/W/Th:7-12,2-7 (530)-753-8511
I am not sure but I am guessing the problem is that it found gnu C
compiler for C code but you told it to use intel compiler for fortran
code (e.g. FC=ifort).
That is correct.
Perhaps, if you also told it to use intel C and C++ compilers, using...
I do not have a license for the intel C/C++ compilers, only the fortran compiler. Is there no way to compile HDF5 for ifort if the intel C compiler is not present?
Thanks,
Thomas
···
I think GNU Autoconf tries really hard to find and use a 'gcc' before it
tries using a non GNU compiler.
Mark
On Sat, 2010-08-07 at 15:57, Thomas Robitaille wrote:
Hi,
I'm trying to install HDF 1.8.5 on a Mac Pro with 10.5.8 installed. I configured the install with
--
Mark C. Miller, Lawrence Livermore National Laboratory
================!!LLNL BUSINESS ONLY!!================ miller86@llnl.gov urgent: miller86@pager.llnl.gov
T:8-6 (925)-423-5901 M/W/Th:7-12,2-7 (530)-753-8511
Do you know if Intel compiler defaults to 64-bit and gcc to 32-bit on your machine? I think that was the case when I had 10.5.8.
To enable 32-bit fro ifort I had to run /opt/intel/fc/10.1.006/bin/ifortvars.csh
Elena
···
On Aug 7, 2010, at 5:57 PM, Thomas Robitaille wrote:
Hi,
I'm trying to install HDF 1.8.5 on a Mac Pro with 10.5.8 installed. I configured the install with
This was indeed the problem (32-bit gcc and 64-bit ifort). For the record, instead of running the ifortvars.csh script, I ran the same configure command as before, but with FC="ifort -m32", and this also works, i.e.
./configure --enable-fortran FC="ifort -m32" --prefix=$HOME/usr/hdf5 --enable-hl --enable-cxx
make
make install
Thanks for your help,
Thomas
···
On Aug 8, 2010, at 12:01 PM, Elena Pourmal wrote:
Hi Thomas,
Do you know if Intel compiler defaults to 64-bit and gcc to 32-bit on your machine? I think that was the case when I had 10.5.8.
To enable 32-bit fro ifort I had to run /opt/intel/fc/10.1.006/bin/ifortvars.csh
Elena
On Aug 7, 2010, at 5:57 PM, Thomas Robitaille wrote:
Hi,
I'm trying to install HDF 1.8.5 on a Mac Pro with 10.5.8 installed. I configured the install with
HI :
I am install HDF5 in the readhad system.
Distributor ID: RedHatEnterpriseServer
Description: Red Hat Enterprise Linux Server release 5.5 (Tikanga)
Release: 5.5
I use the config command as:
./configure --enable-forturn --prefix=/usr/local/hdf5.
so , configure is good.
but , when i "make" it .
so ,bash report error as:
../libtool: line 494: syntax error near unexpected token `newline'
../libtool: line 494: ` case `(set -o) 2>/dev/null` in *posix*) set -o posix;;
'sac
My response wasn't meant to suggest you could not compile HDF5 for ifort
without also having icc. I just guessed you ran into the same problem I
have where I've got mixed compilers (ifort and gcc) and have always been
able to 'fix' it by setting it to use all intel compilers. I never dug
any deeper to see what was going on. But, now that I know its a
32/64-bit issue, I'll know better how to handle this next time I
encounter it.
Mark
···
On Sun, 2010-08-08 at 11:38, Thomas Robitaille wrote:
Hi Elena,
This was indeed the problem (32-bit gcc and 64-bit ifort). For the record, instead of running the ifortvars.csh script, I ran the same configure command as before, but with FC="ifort -m32", and this also works, i.e.
./configure --enable-fortran FC="ifort -m32" --prefix=$HOME/usr/hdf5 --enable-hl --enable-cxx
make
make install
Thanks for your help,
Thomas
On Aug 8, 2010, at 12:01 PM, Elena Pourmal wrote:
> Hi Thomas,
>
> Do you know if Intel compiler defaults to 64-bit and gcc to 32-bit on your machine? I think that was the case when I had 10.5.8.
> To enable 32-bit fro ifort I had to run /opt/intel/fc/10.1.006/bin/ifortvars.csh
>
> Elena
>
> On Aug 7, 2010, at 5:57 PM, Thomas Robitaille wrote:
>
>> Hi,
>>
>> I'm trying to install HDF 1.8.5 on a Mac Pro with 10.5.8 installed. I configured the install with
>>
>> ./configure --enable-fortran FC=ifort --prefix=$HOME/usr/hdf5 --enable-hl --enable-cxx
>>
>> and then typed
>>
>> make
>>
>> and I get the following error:
>>
>> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -I../../src -DNDEBUG -UH5_DEBUG_API -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -O3 -fomit-frame-pointer -finline-functions -MT H5f90kit.lo -MD -MP -MF .deps/H5f90kit.Tpo -c H5f90kit.c -o H5f90kit.o
>> In file included from H5f90.h:23,
>> from H5f90kit.c:19:
>> [...]
>> H5f90proto.h:1216: warning: redundant redeclaration of 'H5_FC_FUNC_'
>> H5f90proto.h:1213: warning: previous declaration of 'H5_FC_FUNC_' was here
>> H5f90proto.h:1218: error: 'H5_FC_FUNC_' declared as function returning a function
>> H5f90proto.h:1218: warning: parameter names (without types) in function declaration
>> H5f90proto.h:1218: warning: redundant redeclaration of 'H5_FC_FUNC_'
>> H5f90proto.h:1216: warning: previous declaration of 'H5_FC_FUNC_' was here
>> make[3]: *** [H5f90kit.lo] Error 1
>> make[2]: *** [all] Error 2
>> make[1]: *** [all-recursive] Error 1
>> make: *** [all-recursive] Error 1
>>
>> I've used exactly the same commands on MacOS 10.6 and didn't run into any issues. Does anyone have any ideas what the problem could be?
>>
>> Thanks for any help,
>>
>> Thomas
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> Hdf-forum@hdfgroup.org
>> http://*mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@hdfgroup.org
> http://*mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
--
Mark C. Miller, Lawrence Livermore National Laboratory
================!!LLNL BUSINESS ONLY!!================ miller86@llnl.gov urgent: miller86@pager.llnl.gov
T:8-6 (925)-423-5901 M/W/Th:7-12,2-7 (530)-753-8511
"ifort -m32" didn't work on my machine due to some missing libraries, but this is definitely how it should work.
Elena
···
On Aug 8, 2010, at 1:38 PM, Thomas Robitaille wrote:
Hi Elena,
This was indeed the problem (32-bit gcc and 64-bit ifort). For the record, instead of running the ifortvars.csh script, I ran the same configure command as before, but with FC="ifort -m32", and this also works, i.e.
./configure --enable-fortran FC="ifort -m32" --prefix=$HOME/usr/hdf5 --enable-hl --enable-cxx
make
make install
Thanks for your help,
Thomas
On Aug 8, 2010, at 12:01 PM, Elena Pourmal wrote:
Hi Thomas,
Do you know if Intel compiler defaults to 64-bit and gcc to 32-bit on your machine? I think that was the case when I had 10.5.8.
To enable 32-bit fro ifort I had to run /opt/intel/fc/10.1.006/bin/ifortvars.csh
Elena
On Aug 7, 2010, at 5:57 PM, Thomas Robitaille wrote:
Hi,
I'm trying to install HDF 1.8.5 on a Mac Pro with 10.5.8 installed. I configured the install with
