Hello everyone!
I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
I’ve installed h5pfc and I’m running a Fortran based software, but I read this error:
19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> make
h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none -ffast-math -c parameters.F90
make: h5pfc: No such file or directory
make: *** [parameters.o] Error 1
Where is the problem?
Thank you very much
My Kindest Regards
Elisabetta
Hi Elisabetta,
The information you give is a bit light. If h5pfc is indeed installed, its
location will be returned by the command
which h5pfc
Note that depending on where you installed HDF5 on your computer, you may need
to setup your environment (the shell variables PATH and others).
Pierre
On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote:
Hello everyone!
I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
I’ve installed h5pfc and I’m running a Fortran based software, but I read this error:19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> make
h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none -ffast-math -c parameters.F90
make: h5pfc: No such file or directory
make: *** [parameters.o] Error 1Where is the problem?
Thank you very much
My Kindest Regards
Elisabetta
Hi Pierre,
the command : which h5pfc doesn't give me any location of the directory so
I need to setup the shell variable Path and others.
is there a tutorial of how to set the variables in the bash_profile?
thank you
my kindest regards
Elisabetta
On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < pierre.debuyl@chem.kuleuven.be> wrote:
Hi Elisabetta,
The information you give is a bit light. If h5pfc is indeed installed, its
location will be returned by the commandwhich h5pfc
Note that depending on where you installed HDF5 on your computer, you may
need
to setup your environment (the shell variables PATH and others).Pierre
On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote:
> Hello everyone!
>
> I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
> I’ve installed h5pfc and I’m running a Fortran based software, but I
read this error:
>
> 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> make
> h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none -ffast-math
-c parameters.F90
> make: h5pfc: No such file or directory
> make: *** [parameters.o] Error 1
>
> Where is the problem?
>
> Thank you very much
> My Kindest Regards
> Elisabetta_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
my set in bashrc is this :
export HDF5=/usr/local/hdf5-1.8.14
export PATH=$PATH:${HDF5}/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
but when I have to use it with hdf5, it doesn't work.
my kindest regards
Elisabetta
On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < elisabetta.strazz@gmail.com> wrote:
Hi Pierre,
the command : which h5pfc doesn't give me any location of the directory
so I need to setup the shell variable Path and others.
is there a tutorial of how to set the variables in the bash_profile?thank you
my kindest regards
ElisabettaOn Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < > pierre.debuyl@chem.kuleuven.be> wrote:
Hi Elisabetta,
The information you give is a bit light. If h5pfc is indeed installed, its
location will be returned by the commandwhich h5pfc
Note that depending on where you installed HDF5 on your computer, you may
need
to setup your environment (the shell variables PATH and others).Pierre
On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote:
> Hello everyone!
>
> I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
> I’ve installed h5pfc and I’m running a Fortran based software, but I
read this error:
>
> 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> make
> h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none -ffast-math
-c parameters.F90
> make: h5pfc: No such file or directory
> make: *** [parameters.o] Error 1
>
> Where is the problem?
>
> Thank you very much
> My Kindest Regards
> Elisabetta_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
Hi,
my set in bashrc is this :
export HDF5=/usr/local/hdf5-1.8.14
export PATH=$PATH:${HDF5}/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/libbut when I have to use it with hdf5, it doesn't work.
can you post the result of
ls /usr/local/hdf5-1.8.14/bin
ls /usr/local/hdf5-1.8.14/lib
This would help to diagnose the problem. A few more questions:
1. How did you install hdf5? If you compiled it yourself you should make sure
that you have enabled the parallel feature.
2. Is your code parallel? If not, you can use h5fc instead of h5pfc
3. It also matters to match the fortran compiler used to compile HDF5 and the
one you use to build your code.
Pierre
On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri wrote:
On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < > elisabetta.strazz@gmail.com> wrote:
> Hi Pierre,
>
> the command : which h5pfc doesn't give me any location of the directory
> so I need to setup the shell variable Path and others.
> is there a tutorial of how to set the variables in the bash_profile?
>
> thank you
> my kindest regards
> Elisabetta
>
> On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < > > pierre.debuyl@chem.kuleuven.be> wrote:
>
>> Hi Elisabetta,
>>
>> The information you give is a bit light. If h5pfc is indeed installed, its
>> location will be returned by the command
>>
>> which h5pfc
>>
>> Note that depending on where you installed HDF5 on your computer, you may
>> need
>> to setup your environment (the shell variables PATH and others).
>>
>> Pierre
>>
>> On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote:
>> > Hello everyone!
>> >
>> > I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
>> > I’ve installed h5pfc and I’m running a Fortran based software, but I
>> read this error:
>> >
>> > 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> make
>> > h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none -ffast-math
>> -c parameters.F90
>> > make: h5pfc: No such file or directory
>> > make: *** [parameters.o] Error 1
>> >
>> > Where is the problem?
>> >
>> > Thank you very much
>> > My Kindest Regards
>> > Elisabetta
>>
>>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> Hdf-forum@lists.hdfgroup.org
>> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
>> Twitter: https://twitter.com/hdf5
>
>
>
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------
Hi Pierre,
this is the situation of hdf5 in my computer:
11:34:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
/usr/local/hdf5-1.8.14/bin
*COPYING* *compile* *dependencies* *install-sh*
*make_err* *missing* output_filter.sh *trace*
*buildhdf5* *config.guess* *deploy* *iostats*
*make_overflow* *mkdirs* *release* *yodconfigure*
*chkmanifest* *config.sub* distdep *locate_sw*
*make_vers* *mkinstalldirs* *snapshot*
*cmakehdf5* *depcomp* *h5vers* ltmain.sh
*makehelp* *newer* test-driver
12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
/usr/local/hdf5-1.8.14/lib
ls: /usr/local/hdf5-1.8.14/lib: No such file or directory
12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
It's missing the libraries folder.
1. I've installed hdf5 following the instructions in the page :
https://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL.
2. The code in fortran is not parallel and I've tried to use h5fc instead
of h5pfc.
3. The informations on my gfortran version are:
12:21:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$> gfortran
-v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin14/4.9.2/lto-wrapper
Target: x86_64-apple-darwin14
Configured with: ../gcc-4.9.2/configure --prefix=/usr/local/gfortran
--with-gmp=/opt/gcc-4.8 --enable-languages=c,c++,fortran,objc,obj-c++
--build=x86_64-apple-darwin14
Thread model: posix
gcc version 4.9.2 (GCC)
Thank you
My Kindest Regards
Elisabetta
On Mon, Jul 6, 2015 at 2:17 PM, Pierre de Buyl < pierre.debuyl@chem.kuleuven.be> wrote:
Hi,
On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri wrote:
> my set in bashrc is this :
>
> export HDF5=/usr/local/hdf5-1.8.14
> export PATH=$PATH:${HDF5}/bin
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
>
> but when I have to use it with hdf5, it doesn't work.can you post the result of
ls /usr/local/hdf5-1.8.14/bin
ls /usr/local/hdf5-1.8.14/libThis would help to diagnose the problem. A few more questions:
1. How did you install hdf5? If you compiled it yourself you should make
sure
that you have enabled the parallel feature.
2. Is your code parallel? If not, you can use h5fc instead of h5pfc
3. It also matters to match the fortran compiler used to compile HDF5 and
the
one you use to build your code.Pierre
>
>
> On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < > > elisabetta.strazz@gmail.com> wrote:
>
> > Hi Pierre,
> >
> > the command : which h5pfc doesn't give me any location of the directory
> > so I need to setup the shell variable Path and others.
> > is there a tutorial of how to set the variables in the bash_profile?
> >
> > thank you
> > my kindest regards
> > Elisabetta
> >
> > On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < > > > pierre.debuyl@chem.kuleuven.be> wrote:
> >
> >> Hi Elisabetta,
> >>
> >> The information you give is a bit light. If h5pfc is indeed
installed, its
> >> location will be returned by the command
> >>
> >> which h5pfc
> >>
> >> Note that depending on where you installed HDF5 on your computer, you
may
> >> need
> >> to setup your environment (the shell variables PATH and others).
> >>
> >> Pierre
> >>
> >> On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote:
> >> > Hello everyone!
> >> >
> >> > I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
> >> > I’ve installed h5pfc and I’m running a Fortran based software, but I
> >> read this error:
> >> >
> >> > 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
make
> >> > h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none -ffast-math
> >> -c parameters.F90
> >> > make: h5pfc: No such file or directory
> >> > make: *** [parameters.o] Error 1
> >> >
> >> > Where is the problem?
> >> >
> >> > Thank you very much
> >> > My Kindest Regards
> >> > Elisabetta
> >>
> >>
> >> _______________________________________________
> >> Hdf-forum is for HDF software users discussion.
> >> Hdf-forum@lists.hdfgroup.org
> >>
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> >> Twitter: https://twitter.com/hdf5
> >
> >
> >> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@lists.hdfgroup.org
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> Twitter: https://twitter.com/hdf5--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
Hi Pierre,
I've installed again HDF5 with the Fortran and C++ interfaces and with SZIP
compression and there is an error:
----------------------------------------------------
14:51:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
./configure --prefix=/usr/local/hdf5 --enable-fortran \ --enable-cxx
--with-szlib=PATH_TO_SZIP
configure: WARNING: you should use --build, --host, --target
configure: WARNING: invalid host type: --enable-cxx
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /sw/bin/gmkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... configure: error: /bin/sh bin/config.sub
--enable-cxx failed
configure: WARNING: cache variable ac_cv_build contains a newline
------------------------------------------------------
Thank you
My Kindest Regards
Elisabetta
On Wed, Jul 8, 2015 at 12:22 PM, Elisabetta Strazzeri < elisabetta.strazz@gmail.com> wrote:
Hi Pierre,
this is the situation of hdf5 in my computer:11:34:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
/usr/local/hdf5-1.8.14/bin*COPYING* *compile* *dependencies* *install-sh*
*make_err* *missing* output_filter.sh *trace**buildhdf5* *config.guess* *deploy* *iostats*
*make_overflow* *mkdirs* *release* *yodconfigure**chkmanifest* *config.sub* distdep *locate_sw*
*make_vers* *mkinstalldirs* *snapshot**cmakehdf5* *depcomp* *h5vers* ltmain.sh
*makehelp* *newer* test-driver12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
/usr/local/hdf5-1.8.14/libls: /usr/local/hdf5-1.8.14/lib: No such file or directory
12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
It's missing the libraries folder.
1. I've installed hdf5 following the instructions in the page :
https://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL
.2. The code in fortran is not parallel and I've tried to use h5fc instead
of h5pfc.3. The informations on my gfortran version are:
12:21:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
gfortran -vUsing built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin14/4.9.2/lto-wrapper
Target: x86_64-apple-darwin14
Configured with: ../gcc-4.9.2/configure --prefix=/usr/local/gfortran
--with-gmp=/opt/gcc-4.8 --enable-languages=c,c++,fortran,objc,obj-c++
--build=x86_64-apple-darwin14Thread model: posix
gcc version 4.9.2 (GCC)
Thank you
My Kindest Regards
Elisabetta
On Mon, Jul 6, 2015 at 2:17 PM, Pierre de Buyl < > pierre.debuyl@chem.kuleuven.be> wrote:
Hi,
On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri wrote:
> my set in bashrc is this :
>
> export HDF5=/usr/local/hdf5-1.8.14
> export PATH=$PATH:${HDF5}/bin
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
>
> but when I have to use it with hdf5, it doesn't work.can you post the result of
ls /usr/local/hdf5-1.8.14/bin
ls /usr/local/hdf5-1.8.14/libThis would help to diagnose the problem. A few more questions:
1. How did you install hdf5? If you compiled it yourself you should make
sure
that you have enabled the parallel feature.
2. Is your code parallel? If not, you can use h5fc instead of h5pfc
3. It also matters to match the fortran compiler used to compile HDF5 and
the
one you use to build your code.Pierre
>
>
> On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < >> > elisabetta.strazz@gmail.com> wrote:
>
> > Hi Pierre,
> >
> > the command : which h5pfc doesn't give me any location of the
directory
> > so I need to setup the shell variable Path and others.
> > is there a tutorial of how to set the variables in the bash_profile?
> >
> > thank you
> > my kindest regards
> > Elisabetta
> >
> > On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < >> > > pierre.debuyl@chem.kuleuven.be> wrote:
> >
> >> Hi Elisabetta,
> >>
> >> The information you give is a bit light. If h5pfc is indeed
installed, its
> >> location will be returned by the command
> >>
> >> which h5pfc
> >>
> >> Note that depending on where you installed HDF5 on your computer,
you may
> >> need
> >> to setup your environment (the shell variables PATH and others).
> >>
> >> Pierre
> >>
> >> On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote:
> >> > Hello everyone!
> >> >
> >> > I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
> >> > I’ve installed h5pfc and I’m running a Fortran based software, but
I
> >> read this error:
> >> >
> >> > 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
make
> >> > h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none
-ffast-math
> >> -c parameters.F90
> >> > make: h5pfc: No such file or directory
> >> > make: *** [parameters.o] Error 1
> >> >
> >> > Where is the problem?
> >> >
> >> > Thank you very much
> >> > My Kindest Regards
> >> > Elisabetta
> >>
> >>
> >> _______________________________________________
> >> Hdf-forum is for HDF software users discussion.
> >> Hdf-forum@lists.hdfgroup.org
> >>
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> >> Twitter: https://twitter.com/hdf5
> >
> >
> >> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@lists.hdfgroup.org
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> Twitter: https://twitter.com/hdf5--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
Hi,
HDF5 does not provide parallel (MPI) for C++ API. Specify —enable-parallel and —enable-cxx together will
cause configure to issue an error. You can add "--enable-unsupported” to override it but there is
not much point in specifying both “—enable-parallel —enable-cxx” together since it still
does not provide parallel C++ support.
Also, configure defaults to use clang as the C compiler in a Mac OSX platform.
Clang is not an MPI parallel compiler. You need to set $CC to a MPI compiler
(e.g., mpicc if that is the name of the MPI compiler in your system) when you
want to configure with —enable-parallel.
If you are not using the MPI parallel feature in HDF5, you may try this configure
command to build a simple serial HDF5.
$ ./configure —prefix=<where_to_install> —enable-fortran —enable-cxx —with-szlib=<where szip library and header files are>
Hope this helps.
-Albert Cheng
THG staff
On Jul 8, 2015, at 7:29 AM, Pierre de Buyl <pierre.debuyl@chem.kuleuven.be<mailto:pierre.debuyl@chem.kuleuven.be>> wrote:
Hi,
There are several confusing parts.
1. You have copied the hdf5 software in /usr/local/hdf5-1.8.14
2. There is a backslash '\' in your configure line
I suggest the following:
1. remove all hdf5 related files from your computer.
2. download again the hdf5-1.8.14 source code. do not put it in /usr or
/usr/local
3. go to the hdf5-1.8.14 directory
4. configure with
./configure --prefix=/usr/local/hdf5 --enable-fortran --enable-fortran2003 --enable-shared --enable-parallel --enable-cxx --with-szlib=PATH_TO_SZIP
(if you don't need C++ remove enable-cxx)
the command should be in a single line. else you need to put a backslash but
/only/ at the interruption at the end of the line.
then, make and make install
afterwards, ls /usr/local/hdf5/bin should contain h5pfc
On Wed, Jul 08, 2015 at 02:55:21PM +0300, Elisabetta Strazzeri wrote:
Hi Pierre,
I've installed again HDF5 with the Fortran and C++ interfaces and with SZIP
compression and there is an error:
----------------------------------------------------
14:51:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
./configure --prefix=/usr/local/hdf5 --enable-fortran \ --enable-cxx
--with-szlib=PATH_TO_SZIP
configure: WARNING: you should use --build, --host, --target
configure: WARNING: invalid host type: --enable-cxx
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /sw/bin/gmkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... configure: error: /bin/sh bin/config.sub
--enable-cxx failed
configure: WARNING: cache variable ac_cv_build contains a newline
------------------------------------------------------
Thank you
My Kindest Regards
Elisabetta
On Wed, Jul 8, 2015 at 12:22 PM, Elisabetta Strazzeri < elisabetta.strazz@gmail.com<mailto:elisabetta.strazz@gmail.com>> wrote:
Hi Pierre,
this is the situation of hdf5 in my computer:
11:34:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
/usr/local/hdf5-1.8.14/bin
*COPYING* *compile* *dependencies* *install-sh*
*make_err* *missing* output_filter.sh *trace*
*buildhdf5* *config.guess* *deploy* *iostats*
*make_overflow* *mkdirs* *release* *yodconfigure*
*chkmanifest* *config.sub* distdep *locate_sw*
*make_vers* *mkinstalldirs* *snapshot*
*cmakehdf5* *depcomp* *h5vers* ltmain.sh
*makehelp* *newer* test-driver
12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
/usr/local/hdf5-1.8.14/lib
ls: /usr/local/hdf5-1.8.14/lib: No such file or directory
12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
It's missing the libraries folder.
1. I've installed hdf5 following the instructions in the page :
https://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL
.
2. The code in fortran is not parallel and I've tried to use h5fc instead
of h5pfc.
3. The informations on my gfortran version are:
12:21:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin14/4.9.2/lto-wrapper
Target: x86_64-apple-darwin14
Configured with: ../gcc-4.9.2/configure --prefix=/usr/local/gfortran
--with-gmp=/opt/gcc-4.8 --enable-languages=c,c++,fortran,objc,obj-c++
--build=x86_64-apple-darwin14
Thread model: posix
gcc version 4.9.2 (GCC)
Thank you
My Kindest Regards
Elisabetta
On Mon, Jul 6, 2015 at 2:17 PM, Pierre de Buyl < pierre.debuyl@chem.kuleuven.be> wrote:
Hi,
On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri wrote:
my set in bashrc is this :
export HDF5=/usr/local/hdf5-1.8.14
export PATH=$PATH:${HDF5}/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
but when I have to use it with hdf5, it doesn't work.
can you post the result of
ls /usr/local/hdf5-1.8.14/bin
ls /usr/local/hdf5-1.8.14/lib
This would help to diagnose the problem. A few more questions:
1. How did you install hdf5? If you compiled it yourself you should make
sure
that you have enabled the parallel feature.
2. Is your code parallel? If not, you can use h5fc instead of h5pfc
3. It also matters to match the fortran compiler used to compile HDF5 and
the
one you use to build your code.
Pierre
On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < elisabetta.strazz@gmail.com> wrote:
Hi Pierre,
the command : which h5pfc doesn't give me any location of the
directory
so I need to setup the shell variable Path and others.
is there a tutorial of how to set the variables in the bash_profile?
thank you
my kindest regards
Elisabetta
On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < pierre.debuyl@chem.kuleuven.be> wrote:
Hi Elisabetta,
The information you give is a bit light. If h5pfc is indeed
installed, its
location will be returned by the command
which h5pfc
Note that depending on where you installed HDF5 on your computer,
you may
need
to setup your environment (the shell variables PATH and others).
Pierre
On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote:
Hello everyone!
I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
I’ve installed h5pfc and I’m running a Fortran based software, but
I
read this error:
19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
make
h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none
-ffast-math
-c parameters.F90
make: h5pfc: No such file or directory
make: *** [parameters.o] Error 1
Where is the problem?
Thank you very much
My Kindest Regards
Elisabetta
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org<mailto:Hdf-forum@lists.hdfgroup.org>
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org<mailto:Hdf-forum@lists.hdfgroup.org>
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
Hi,
There are several confusing parts.
1. You have copied the hdf5 software in /usr/local/hdf5-1.8.14
2. There is a backslash '\' in your configure line
I suggest the following:
1. remove all hdf5 related files from your computer.
2. download again the hdf5-1.8.14 source code. do not put it in /usr or
/usr/local
3. go to the hdf5-1.8.14 directory
4. configure with
./configure --prefix=/usr/local/hdf5 --enable-fortran --enable-fortran2003 --enable-shared --enable-parallel --enable-cxx --with-szlib=PATH_TO_SZIP
(if you don't need C++ remove enable-cxx)
the command should be in a single line. else you need to put a backslash but
/only/ at the interruption at the end of the line.
then, make and make install
afterwards, ls /usr/local/hdf5/bin should contain h5pfc
On Wed, Jul 08, 2015 at 02:55:21PM +0300, Elisabetta Strazzeri wrote:
Hi Pierre,
I've installed again HDF5 with the Fortran and C++ interfaces and with SZIP
compression and there is an error:----------------------------------------------------
14:51:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
./configure --prefix=/usr/local/hdf5 --enable-fortran \ --enable-cxx
--with-szlib=PATH_TO_SZIPconfigure: WARNING: you should use --build, --host, --target
configure: WARNING: invalid host type: --enable-cxx
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /sw/bin/gmkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... configure: error: /bin/sh bin/config.sub
--enable-cxx failedconfigure: WARNING: cache variable ac_cv_build contains a newline
------------------------------------------------------
Thank you
My Kindest Regards
Elisabetta
On Wed, Jul 8, 2015 at 12:22 PM, Elisabetta Strazzeri < > elisabetta.strazz@gmail.com> wrote:
> Hi Pierre,
> this is the situation of hdf5 in my computer:
>
> 11:34:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
> /usr/local/hdf5-1.8.14/bin
>
> *COPYING* *compile* *dependencies* *install-sh*
> *make_err* *missing* output_filter.sh *trace*
>
> *buildhdf5* *config.guess* *deploy* *iostats*
> *make_overflow* *mkdirs* *release* *yodconfigure*
>
> *chkmanifest* *config.sub* distdep *locate_sw*
> *make_vers* *mkinstalldirs* *snapshot*
>
> *cmakehdf5* *depcomp* *h5vers* ltmain.sh
> *makehelp* *newer* test-driver
>
> 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
> /usr/local/hdf5-1.8.14/lib
>
> ls: /usr/local/hdf5-1.8.14/lib: No such file or directory
>
> 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
>
> It's missing the libraries folder.
>
> 1. I've installed hdf5 following the instructions in the page :
> https://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL
> .
>
> 2. The code in fortran is not parallel and I've tried to use h5fc instead
> of h5pfc.
>
> 3. The informations on my gfortran version are:
>
> 12:21:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
> gfortran -v
>
> Using built-in specs.
>
> COLLECT_GCC=gfortran
>
>
> COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin14/4.9.2/lto-wrapper
>
> Target: x86_64-apple-darwin14
>
> Configured with: ../gcc-4.9.2/configure --prefix=/usr/local/gfortran
> --with-gmp=/opt/gcc-4.8 --enable-languages=c,c++,fortran,objc,obj-c++
> --build=x86_64-apple-darwin14
>
> Thread model: posix
>
> gcc version 4.9.2 (GCC)
>
> Thank you
>
> My Kindest Regards
>
> Elisabetta
>
> On Mon, Jul 6, 2015 at 2:17 PM, Pierre de Buyl < > > pierre.debuyl@chem.kuleuven.be> wrote:
>
>> Hi,
>>
>> On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri wrote:
>> > my set in bashrc is this :
>> >
>> > export HDF5=/usr/local/hdf5-1.8.14
>> > export PATH=$PATH:${HDF5}/bin
>> > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
>> >
>> > but when I have to use it with hdf5, it doesn't work.
>>
>> can you post the result of
>>
>> ls /usr/local/hdf5-1.8.14/bin
>> ls /usr/local/hdf5-1.8.14/lib
>>
>>
>> This would help to diagnose the problem. A few more questions:
>> 1. How did you install hdf5? If you compiled it yourself you should make
>> sure
>> that you have enabled the parallel feature.
>> 2. Is your code parallel? If not, you can use h5fc instead of h5pfc
>> 3. It also matters to match the fortran compiler used to compile HDF5 and
>> the
>> one you use to build your code.
>>
>> Pierre
>>
>> >
>> >
>> > On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < > >> > elisabetta.strazz@gmail.com> wrote:
>> >
>> > > Hi Pierre,
>> > >
>> > > the command : which h5pfc doesn't give me any location of the
>> directory
>> > > so I need to setup the shell variable Path and others.
>> > > is there a tutorial of how to set the variables in the bash_profile?
>> > >
>> > > thank you
>> > > my kindest regards
>> > > Elisabetta
>> > >
>> > > On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < > >> > > pierre.debuyl@chem.kuleuven.be> wrote:
>> > >
>> > >> Hi Elisabetta,
>> > >>
>> > >> The information you give is a bit light. If h5pfc is indeed
>> installed, its
>> > >> location will be returned by the command
>> > >>
>> > >> which h5pfc
>> > >>
>> > >> Note that depending on where you installed HDF5 on your computer,
>> you may
>> > >> need
>> > >> to setup your environment (the shell variables PATH and others).
>> > >>
>> > >> Pierre
>> > >>
>> > >> On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri wrote:
>> > >> > Hello everyone!
>> > >> >
>> > >> > I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
>> > >> > I’ve installed h5pfc and I’m running a Fortran based software, but
>> I
>> > >> read this error:
>> > >> >
>> > >> > 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
>> make
>> > >> > h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none
>> -ffast-math
>> > >> -c parameters.F90
>> > >> > make: h5pfc: No such file or directory
>> > >> > make: *** [parameters.o] Error 1
>> > >> >
>> > >> > Where is the problem?
>> > >> >
>> > >> > Thank you very much
>> > >> > My Kindest Regards
>> > >> > Elisabetta
>> > >>
>> > >>
>> > >> _______________________________________________
>> > >> Hdf-forum is for HDF software users discussion.
>> > >> Hdf-forum@lists.hdfgroup.org
>> > >>
>> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
>> > >> Twitter: https://twitter.com/hdf5
>> > >
>> > >
>> > >
>>
>> > _______________________________________________
>> > Hdf-forum is for HDF software users discussion.
>> > Hdf-forum@lists.hdfgroup.org
>> > http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
>> > Twitter: https://twitter.com/hdf5
>>
>>
>> --
>> -----------------------------------------------------------
>> Pierre de Buyl
>> KU Leuven - Institute for Theoretical Physics
>> T +32 16 3 27355
>> W http://pdebuyl.be/
>> -----------------------------------------------------------
>>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> Hdf-forum@lists.hdfgroup.org
>> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
>> Twitter: https://twitter.com/hdf5
>>
>
>
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------
Hi Pierre,
I tried different times to configure but it seems there is a problem with
the configure file:
16:57:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
./configure --prefix=/usr/local/hdf5 --enable-fortran --enable-fortran2003
-- enable-shared --enable-parallel --enable-cxx
--with-szlib=/Users/elisabettastrazzeri/hdf5-1.8.14
: command not found7:
./configure: line 47: syntax error near unexpected token `&&'
'/configure: line 47: ` && (test "X`print -r -- $as_echo`" =
"X$as_echo") 2>/dev/null; then
Thank you
My Kindest Regards
Elisabetta
On Wed, Jul 8, 2015 at 3:29 PM, Pierre de Buyl < pierre.debuyl@chem.kuleuven.be> wrote:
Hi,
There are several confusing parts.
1. You have copied the hdf5 software in /usr/local/hdf5-1.8.14
2. There is a backslash '\' in your configure lineI suggest the following:
1. remove all hdf5 related files from your computer.
2. download again the hdf5-1.8.14 source code. do not put it in /usr or
/usr/local
3. go to the hdf5-1.8.14 directory
4. configure with./configure --prefix=/usr/local/hdf5 --enable-fortran --enable-fortran2003
--enable-shared --enable-parallel --enable-cxx --with-szlib=PATH_TO_SZIP(if you don't need C++ remove enable-cxx)
the command should be in a single line. else you need to put a backslash
but
/only/ at the interruption at the end of the line.then, make and make install
afterwards, ls /usr/local/hdf5/bin should contain h5pfc
On Wed, Jul 08, 2015 at 02:55:21PM +0300, Elisabetta Strazzeri wrote:
> Hi Pierre,
> I've installed again HDF5 with the Fortran and C++ interfaces and with
SZIP
> compression and there is an error:
>
> ----------------------------------------------------
>
> 14:51:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
> ./configure --prefix=/usr/local/hdf5 --enable-fortran \ --enable-cxx
> --with-szlib=PATH_TO_SZIP
>
> configure: WARNING: you should use --build, --host, --target
>
> configure: WARNING: invalid host type: --enable-cxx
>
> checking for a BSD-compatible install... /usr/bin/install -c
>
> checking whether build environment is sane... yes
>
> checking for a thread-safe mkdir -p... /sw/bin/gmkdir -p
>
> checking for gawk... gawk
>
> checking whether make sets $(MAKE)... yes
>
> checking whether make supports nested variables... yes
>
> checking whether make supports nested variables... (cached) yes
>
> checking whether to enable maintainer-specific portions of Makefiles...
no
>
> checking build system type... configure: error: /bin/sh bin/config.sub
> --enable-cxx failed
>
> configure: WARNING: cache variable ac_cv_build contains a newline
>
> ------------------------------------------------------
>
> Thank you
>
> My Kindest Regards
>
> Elisabetta
>
> On Wed, Jul 8, 2015 at 12:22 PM, Elisabetta Strazzeri < > > elisabetta.strazz@gmail.com> wrote:
>
> > Hi Pierre,
> > this is the situation of hdf5 in my computer:
> >
> > 11:34:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
> > /usr/local/hdf5-1.8.14/bin
> >
> > *COPYING* *compile* *dependencies* *install-sh*
> > *make_err* *missing* output_filter.sh *trace*
> >
> > *buildhdf5* *config.guess* *deploy* *iostats*
> > *make_overflow* *mkdirs* *release*
*yodconfigure*
> >
> > *chkmanifest* *config.sub* distdep *locate_sw*
> > *make_vers* *mkinstalldirs* *snapshot*
> >
> > *cmakehdf5* *depcomp* *h5vers* ltmain.sh
> > *makehelp* *newer* test-driver
> >
> > 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
> > /usr/local/hdf5-1.8.14/lib
> >
> > ls: /usr/local/hdf5-1.8.14/lib: No such file or directory
> >
> > 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
> >
> > It's missing the libraries folder.
> >
> > 1. I've installed hdf5 following the instructions in the page :
> >
https://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL
> > .
> >
> > 2. The code in fortran is not parallel and I've tried to use h5fc
instead
> > of h5pfc.
> >
> > 3. The informations on my gfortran version are:
> >
> > 12:21:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
> > gfortran -v
> >
> > Using built-in specs.
> >
> > COLLECT_GCC=gfortran
> >
> >
> >
COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin14/4.9.2/lto-wrapper
> >
> > Target: x86_64-apple-darwin14
> >
> > Configured with: ../gcc-4.9.2/configure --prefix=/usr/local/gfortran
> > --with-gmp=/opt/gcc-4.8 --enable-languages=c,c++,fortran,objc,obj-c++
> > --build=x86_64-apple-darwin14
> >
> > Thread model: posix
> >
> > gcc version 4.9.2 (GCC)
> >
> > Thank you
> >
> > My Kindest Regards
> >
> > Elisabetta
> >
> > On Mon, Jul 6, 2015 at 2:17 PM, Pierre de Buyl < > > > pierre.debuyl@chem.kuleuven.be> wrote:
> >
> >> Hi,
> >>
> >> On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri wrote:
> >> > my set in bashrc is this :
> >> >
> >> > export HDF5=/usr/local/hdf5-1.8.14
> >> > export PATH=$PATH:${HDF5}/bin
> >> > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
> >> >
> >> > but when I have to use it with hdf5, it doesn't work.
> >>
> >> can you post the result of
> >>
> >> ls /usr/local/hdf5-1.8.14/bin
> >> ls /usr/local/hdf5-1.8.14/lib
> >>
> >>
> >> This would help to diagnose the problem. A few more questions:
> >> 1. How did you install hdf5? If you compiled it yourself you should
make
> >> sure
> >> that you have enabled the parallel feature.
> >> 2. Is your code parallel? If not, you can use h5fc instead of h5pfc
> >> 3. It also matters to match the fortran compiler used to compile HDF5
and
> >> the
> >> one you use to build your code.
> >>
> >> Pierre
> >>
> >> >
> >> >
> >> > On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < > > >> > elisabetta.strazz@gmail.com> wrote:
> >> >
> >> > > Hi Pierre,
> >> > >
> >> > > the command : which h5pfc doesn't give me any location of the
> >> directory
> >> > > so I need to setup the shell variable Path and others.
> >> > > is there a tutorial of how to set the variables in the
bash_profile?
> >> > >
> >> > > thank you
> >> > > my kindest regards
> >> > > Elisabetta
> >> > >
> >> > > On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < > > >> > > pierre.debuyl@chem.kuleuven.be> wrote:
> >> > >
> >> > >> Hi Elisabetta,
> >> > >>
> >> > >> The information you give is a bit light. If h5pfc is indeed
> >> installed, its
> >> > >> location will be returned by the command
> >> > >>
> >> > >> which h5pfc
> >> > >>
> >> > >> Note that depending on where you installed HDF5 on your computer,
> >> you may
> >> > >> need
> >> > >> to setup your environment (the shell variables PATH and others).
> >> > >>
> >> > >> Pierre
> >> > >>
> >> > >> On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri > wrote:
> >> > >> > Hello everyone!
> >> > >> >
> >> > >> > I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
> >> > >> > I’ve installed h5pfc and I’m running a Fortran based software,
but
> >> I
> >> > >> read this error:
> >> > >> >
> >> > >> > 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta
:FortranCode:$>
> >> make
> >> > >> > h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none
> >> -ffast-math
> >> > >> -c parameters.F90
> >> > >> > make: h5pfc: No such file or directory
> >> > >> > make: *** [parameters.o] Error 1
> >> > >> >
> >> > >> > Where is the problem?
> >> > >> >
> >> > >> > Thank you very much
> >> > >> > My Kindest Regards
> >> > >> > Elisabetta
> >> > >>
> >> > >>
> >> > >> _______________________________________________
> >> > >> Hdf-forum is for HDF software users discussion.
> >> > >> Hdf-forum@lists.hdfgroup.org
> >> > >>
> >>
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> >> > >> Twitter: https://twitter.com/hdf5
> >> > >
> >> > >
> >> > >
> >>
> >> > _______________________________________________
> >> > Hdf-forum is for HDF software users discussion.
> >> > Hdf-forum@lists.hdfgroup.org
> >> >
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> >> > Twitter: https://twitter.com/hdf5
> >>
> >>
> >> --
> >> -----------------------------------------------------------
> >> Pierre de Buyl
> >> KU Leuven - Institute for Theoretical Physics
> >> T +32 16 3 27355
> >> W http://pdebuyl.be/
> >> -----------------------------------------------------------
> >>
> >> _______________________________________________
> >> Hdf-forum is for HDF software users discussion.
> >> Hdf-forum@lists.hdfgroup.org
> >>
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> >> Twitter: https://twitter.com/hdf5
> >>
> >
> >> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@lists.hdfgroup.org
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> Twitter: https://twitter.com/hdf5--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
Hi,
Please read the email by Albert Cheng. As I don't use a mac currently and never
use C++, I was not aware of the issues.
What compiler and parallel do you have installed on your computer?
Anyway, you should at least remove the "--enable-cxx" option.
Regards,
Pierre
On Wed, Jul 08, 2015 at 05:09:57PM +0300, Elisabetta Strazzeri wrote:
Hi Pierre,
I tried different times to configure but it seems there is a problem with
the configure file:16:57:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
./configure --prefix=/usr/local/hdf5 --enable-fortran --enable-fortran2003
-- enable-shared --enable-parallel --enable-cxx
--with-szlib=/Users/elisabettastrazzeri/hdf5-1.8.14: command not found7:
./configure: line 47: syntax error near unexpected token `&&'
'/configure: line 47: ` && (test "X`print -r -- $as_echo`" =
"X$as_echo") 2>/dev/null; then
Thank you
My Kindest Regards
ElisabettaOn Wed, Jul 8, 2015 at 3:29 PM, Pierre de Buyl < > pierre.debuyl@chem.kuleuven.be> wrote:
> Hi,
>
> There are several confusing parts.
>
> 1. You have copied the hdf5 software in /usr/local/hdf5-1.8.14
> 2. There is a backslash '\' in your configure line
>
> I suggest the following:
> 1. remove all hdf5 related files from your computer.
> 2. download again the hdf5-1.8.14 source code. do not put it in /usr or
> /usr/local
> 3. go to the hdf5-1.8.14 directory
> 4. configure with
>
> ./configure --prefix=/usr/local/hdf5 --enable-fortran --enable-fortran2003
> --enable-shared --enable-parallel --enable-cxx --with-szlib=PATH_TO_SZIP
>
> (if you don't need C++ remove enable-cxx)
> the command should be in a single line. else you need to put a backslash
> but
> /only/ at the interruption at the end of the line.
>
> then, make and make install
>
> afterwards, ls /usr/local/hdf5/bin should contain h5pfc
>
> On Wed, Jul 08, 2015 at 02:55:21PM +0300, Elisabetta Strazzeri wrote:
> > Hi Pierre,
> > I've installed again HDF5 with the Fortran and C++ interfaces and with
> SZIP
> > compression and there is an error:
> >
> > ----------------------------------------------------
> >
> > 14:51:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
> > ./configure --prefix=/usr/local/hdf5 --enable-fortran \ --enable-cxx
> > --with-szlib=PATH_TO_SZIP
> >
> > configure: WARNING: you should use --build, --host, --target
> >
> > configure: WARNING: invalid host type: --enable-cxx
> >
> > checking for a BSD-compatible install... /usr/bin/install -c
> >
> > checking whether build environment is sane... yes
> >
> > checking for a thread-safe mkdir -p... /sw/bin/gmkdir -p
> >
> > checking for gawk... gawk
> >
> > checking whether make sets $(MAKE)... yes
> >
> > checking whether make supports nested variables... yes
> >
> > checking whether make supports nested variables... (cached) yes
> >
> > checking whether to enable maintainer-specific portions of Makefiles...
> no
> >
> > checking build system type... configure: error: /bin/sh bin/config.sub
> > --enable-cxx failed
> >
> > configure: WARNING: cache variable ac_cv_build contains a newline
> >
> > ------------------------------------------------------
> >
> > Thank you
> >
> > My Kindest Regards
> >
> > Elisabetta
> >
> > On Wed, Jul 8, 2015 at 12:22 PM, Elisabetta Strazzeri < > > > elisabetta.strazz@gmail.com> wrote:
> >
> > > Hi Pierre,
> > > this is the situation of hdf5 in my computer:
> > >
> > > 11:34:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
> > > /usr/local/hdf5-1.8.14/bin
> > >
> > > *COPYING* *compile* *dependencies* *install-sh*
> > > *make_err* *missing* output_filter.sh *trace*
> > >
> > > *buildhdf5* *config.guess* *deploy* *iostats*
> > > *make_overflow* *mkdirs* *release*
> *yodconfigure*
> > >
> > > *chkmanifest* *config.sub* distdep *locate_sw*
> > > *make_vers* *mkinstalldirs* *snapshot*
> > >
> > > *cmakehdf5* *depcomp* *h5vers* ltmain.sh
> > > *makehelp* *newer* test-driver
> > >
> > > 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$> ls
> > > /usr/local/hdf5-1.8.14/lib
> > >
> > > ls: /usr/local/hdf5-1.8.14/lib: No such file or directory
> > >
> > > 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
> > >
> > > It's missing the libraries folder.
> > >
> > > 1. I've installed hdf5 following the instructions in the page :
> > >
> https://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL
> > > .
> > >
> > > 2. The code in fortran is not parallel and I've tried to use h5fc
> instead
> > > of h5pfc.
> > >
> > > 3. The informations on my gfortran version are:
> > >
> > > 12:21:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
> > > gfortran -v
> > >
> > > Using built-in specs.
> > >
> > > COLLECT_GCC=gfortran
> > >
> > >
> > >
> COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin14/4.9.2/lto-wrapper
> > >
> > > Target: x86_64-apple-darwin14
> > >
> > > Configured with: ../gcc-4.9.2/configure --prefix=/usr/local/gfortran
> > > --with-gmp=/opt/gcc-4.8 --enable-languages=c,c++,fortran,objc,obj-c++
> > > --build=x86_64-apple-darwin14
> > >
> > > Thread model: posix
> > >
> > > gcc version 4.9.2 (GCC)
> > >
> > > Thank you
> > >
> > > My Kindest Regards
> > >
> > > Elisabetta
> > >
> > > On Mon, Jul 6, 2015 at 2:17 PM, Pierre de Buyl < > > > > pierre.debuyl@chem.kuleuven.be> wrote:
> > >
> > >> Hi,
> > >>
> > >> On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri wrote:
> > >> > my set in bashrc is this :
> > >> >
> > >> > export HDF5=/usr/local/hdf5-1.8.14
> > >> > export PATH=$PATH:${HDF5}/bin
> > >> > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
> > >> >
> > >> > but when I have to use it with hdf5, it doesn't work.
> > >>
> > >> can you post the result of
> > >>
> > >> ls /usr/local/hdf5-1.8.14/bin
> > >> ls /usr/local/hdf5-1.8.14/lib
> > >>
> > >>
> > >> This would help to diagnose the problem. A few more questions:
> > >> 1. How did you install hdf5? If you compiled it yourself you should
> make
> > >> sure
> > >> that you have enabled the parallel feature.
> > >> 2. Is your code parallel? If not, you can use h5fc instead of h5pfc
> > >> 3. It also matters to match the fortran compiler used to compile HDF5
> and
> > >> the
> > >> one you use to build your code.
> > >>
> > >> Pierre
> > >>
> > >> >
> > >> >
> > >> > On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < > > > >> > elisabetta.strazz@gmail.com> wrote:
> > >> >
> > >> > > Hi Pierre,
> > >> > >
> > >> > > the command : which h5pfc doesn't give me any location of the
> > >> directory
> > >> > > so I need to setup the shell variable Path and others.
> > >> > > is there a tutorial of how to set the variables in the
> bash_profile?
> > >> > >
> > >> > > thank you
> > >> > > my kindest regards
> > >> > > Elisabetta
> > >> > >
> > >> > > On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < > > > >> > > pierre.debuyl@chem.kuleuven.be> wrote:
> > >> > >
> > >> > >> Hi Elisabetta,
> > >> > >>
> > >> > >> The information you give is a bit light. If h5pfc is indeed
> > >> installed, its
> > >> > >> location will be returned by the command
> > >> > >>
> > >> > >> which h5pfc
> > >> > >>
> > >> > >> Note that depending on where you installed HDF5 on your computer,
> > >> you may
> > >> > >> need
> > >> > >> to setup your environment (the shell variables PATH and others).
> > >> > >>
> > >> > >> Pierre
> > >> > >>
> > >> > >> On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta Strazzeri > > wrote:
> > >> > >> > Hello everyone!
> > >> > >> >
> > >> > >> > I’m working with a MacBook Pro OS X Yosemite Version 10.10.4
> > >> > >> > I’ve installed h5pfc and I’m running a Fortran based software,
> but
> > >> I
> > >> > >> read this error:
> > >> > >> >
> > >> > >> > 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta
> :FortranCode:$>
> > >> make
> > >> > >> > h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none
> > >> -ffast-math
> > >> > >> -c parameters.F90
> > >> > >> > make: h5pfc: No such file or directory
> > >> > >> > make: *** [parameters.o] Error 1
> > >> > >> >
> > >> > >> > Where is the problem?
> > >> > >> >
> > >> > >> > Thank you very much
> > >> > >> > My Kindest Regards
> > >> > >> > Elisabetta
> > >> > >>
> > >> > >>
> > >> > >> _______________________________________________
> > >> > >> Hdf-forum is for HDF software users discussion.
> > >> > >> Hdf-forum@lists.hdfgroup.org
> > >> > >>
> > >>
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > >> > >> Twitter: https://twitter.com/hdf5
> > >> > >
> > >> > >
> > >> > >
> > >>
> > >> > _______________________________________________
> > >> > Hdf-forum is for HDF software users discussion.
> > >> > Hdf-forum@lists.hdfgroup.org
> > >> >
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > >> > Twitter: https://twitter.com/hdf5
> > >>
> > >>
> > >> --
> > >> -----------------------------------------------------------
> > >> Pierre de Buyl
> > >> KU Leuven - Institute for Theoretical Physics
> > >> T +32 16 3 27355
> > >> W http://pdebuyl.be/
> > >> -----------------------------------------------------------
> > >>
> > >> _______________________________________________
> > >> Hdf-forum is for HDF software users discussion.
> > >> Hdf-forum@lists.hdfgroup.org
> > >>
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > >> Twitter: https://twitter.com/hdf5
> > >>
> > >
> > >
>
> > _______________________________________________
> > Hdf-forum is for HDF software users discussion.
> > Hdf-forum@lists.hdfgroup.org
> > http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > Twitter: https://twitter.com/hdf5
>
>
> --
> -----------------------------------------------------------
> Pierre de Buyl
> KU Leuven - Institute for Theoretical Physics
> T +32 16 3 27355
> W http://pdebuyl.be/
> -----------------------------------------------------------
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@lists.hdfgroup.org
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> Twitter: https://twitter.com/hdf5
>
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------
Hello Albert and Pierre,
I'm very sorry for my delayed answer!
I still don't understand how to use the ./configure command since I have my
hdf5 directory that is :
13:07:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$> ls
ACKNOWLEDGMENTS MANIFEST UserMacros.cmake
*configure* *release_docs*
CMakeFilters.cmake Makefile aclocal.m4
configure.ac *src*
CMakeInstallation.cmake Makefile.am acsite.m4
*examples* *test*
CMakeLists.txt Makefile.dist *bin*
*fortran* *testpar*
COPYING Makefile.in *c++*
*hl* *tools*
CTestConfig.cmake README.txt *config*
*perform* *vms*
///////////////////////////////////////////////////////////////////////////////////////////////////
so when I type the command :
./configure —prefix=<where_to_install> —enable-fortran —enable-cxx
—with-szlib=<where
szip library and header files are>
what is the directory <szip library and header files are>?
the directory <where to install> in my case is
/Users/elisabettastrazzeri/hdf5-1.8.14
?
Thank you very much
My Kindest Regards
Elisabetta
On Wed, Jul 8, 2015 at 7:25 PM, Pierre de Buyl < pierre.debuyl@chem.kuleuven.be> wrote:
Hi,
Please read the email by Albert Cheng. As I don't use a mac currently and
never
use C++, I was not aware of the issues.What compiler and parallel do you have installed on your computer?
Anyway, you should at least remove the "--enable-cxx" option.
Regards,
Pierre
On Wed, Jul 08, 2015 at 05:09:57PM +0300, Elisabetta Strazzeri wrote:
> Hi Pierre,
>
> I tried different times to configure but it seems there is a problem with
> the configure file:
>
> 16:57:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
> ./configure --prefix=/usr/local/hdf5 --enable-fortran
--enable-fortran2003
> -- enable-shared --enable-parallel --enable-cxx
> --with-szlib=/Users/elisabettastrazzeri/hdf5-1.8.14
>
> : command not found7:
>
> ./configure: line 47: syntax error near unexpected token `&&'
>
> '/configure: line 47: ` && (test "X`print -r -- $as_echo`" =
> "X$as_echo") 2>/dev/null; then
> Thank you
> My Kindest Regards
> Elisabetta
>
> On Wed, Jul 8, 2015 at 3:29 PM, Pierre de Buyl < > > pierre.debuyl@chem.kuleuven.be> wrote:
>
> > Hi,
> >
> > There are several confusing parts.
> >
> > 1. You have copied the hdf5 software in /usr/local/hdf5-1.8.14
> > 2. There is a backslash '\' in your configure line
> >
> > I suggest the following:
> > 1. remove all hdf5 related files from your computer.
> > 2. download again the hdf5-1.8.14 source code. do not put it in /usr or
> > /usr/local
> > 3. go to the hdf5-1.8.14 directory
> > 4. configure with
> >
> > ./configure --prefix=/usr/local/hdf5 --enable-fortran
--enable-fortran2003
> > --enable-shared --enable-parallel --enable-cxx
--with-szlib=PATH_TO_SZIP
> >
> > (if you don't need C++ remove enable-cxx)
> > the command should be in a single line. else you need to put a
backslash
> > but
> > /only/ at the interruption at the end of the line.
> >
> > then, make and make install
> >
> > afterwards, ls /usr/local/hdf5/bin should contain h5pfc
> >
> > On Wed, Jul 08, 2015 at 02:55:21PM +0300, Elisabetta Strazzeri wrote:
> > > Hi Pierre,
> > > I've installed again HDF5 with the Fortran and C++ interfaces and
with
> > SZIP
> > > compression and there is an error:
> > >
> > > ----------------------------------------------------
> > >
> > > 14:51:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
> > > ./configure --prefix=/usr/local/hdf5 --enable-fortran \ --enable-cxx
> > > --with-szlib=PATH_TO_SZIP
> > >
> > > configure: WARNING: you should use --build, --host, --target
> > >
> > > configure: WARNING: invalid host type: --enable-cxx
> > >
> > > checking for a BSD-compatible install... /usr/bin/install -c
> > >
> > > checking whether build environment is sane... yes
> > >
> > > checking for a thread-safe mkdir -p... /sw/bin/gmkdir -p
> > >
> > > checking for gawk... gawk
> > >
> > > checking whether make sets $(MAKE)... yes
> > >
> > > checking whether make supports nested variables... yes
> > >
> > > checking whether make supports nested variables... (cached) yes
> > >
> > > checking whether to enable maintainer-specific portions of
Makefiles...
> > no
> > >
> > > checking build system type... configure: error: /bin/sh
bin/config.sub
> > > --enable-cxx failed
> > >
> > > configure: WARNING: cache variable ac_cv_build contains a newline
> > >
> > > ------------------------------------------------------
> > >
> > > Thank you
> > >
> > > My Kindest Regards
> > >
> > > Elisabetta
> > >
> > > On Wed, Jul 8, 2015 at 12:22 PM, Elisabetta Strazzeri < > > > > elisabetta.strazz@gmail.com> wrote:
> > >
> > > > Hi Pierre,
> > > > this is the situation of hdf5 in my computer:
> > > >
> > > > 11:34:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
ls
> > > > /usr/local/hdf5-1.8.14/bin
> > > >
> > > > *COPYING* *compile* *dependencies*
*install-sh*
> > > > *make_err* *missing* output_filter.sh *trace*
> > > >
> > > > *buildhdf5* *config.guess* *deploy* *iostats*
> > > > *make_overflow* *mkdirs* *release*
> > *yodconfigure*
> > > >
> > > > *chkmanifest* *config.sub* distdep *locate_sw*
> > > > *make_vers* *mkinstalldirs* *snapshot*
> > > >
> > > > *cmakehdf5* *depcomp* *h5vers* ltmain.sh
> > > > *makehelp* *newer* test-driver
> > > >
> > > > 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
ls
> > > > /usr/local/hdf5-1.8.14/lib
> > > >
> > > > ls: /usr/local/hdf5-1.8.14/lib: No such file or directory
> > > >
> > > > 12:10:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:FortranCode:$>
> > > >
> > > > It's missing the libraries folder.
> > > >
> > > > 1. I've installed hdf5 following the instructions in the page :
> > > >
> >
https://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/release_docs/INSTALL
> > > > .
> > > >
> > > > 2. The code in fortran is not parallel and I've tried to use h5fc
> > instead
> > > > of h5pfc.
> > > >
> > > > 3. The informations on my gfortran version are:
> > > >
> > > > 12:21:elisabettastrazzeri@MacBook-Pro-di-Elisabetta:hdf5-1.8.14:$>
> > > > gfortran -v
> > > >
> > > > Using built-in specs.
> > > >
> > > > COLLECT_GCC=gfortran
> > > >
> > > >
> > > >
> >
COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin14/4.9.2/lto-wrapper
> > > >
> > > > Target: x86_64-apple-darwin14
> > > >
> > > > Configured with: ../gcc-4.9.2/configure
--prefix=/usr/local/gfortran
> > > > --with-gmp=/opt/gcc-4.8
--enable-languages=c,c++,fortran,objc,obj-c++
> > > > --build=x86_64-apple-darwin14
> > > >
> > > > Thread model: posix
> > > >
> > > > gcc version 4.9.2 (GCC)
> > > >
> > > > Thank you
> > > >
> > > > My Kindest Regards
> > > >
> > > > Elisabetta
> > > >
> > > > On Mon, Jul 6, 2015 at 2:17 PM, Pierre de Buyl < > > > > > pierre.debuyl@chem.kuleuven.be> wrote:
> > > >
> > > >> Hi,
> > > >>
> > > >> On Sun, Jul 05, 2015 at 02:00:30PM +0300, Elisabetta Strazzeri > wrote:
> > > >> > my set in bashrc is this :
> > > >> >
> > > >> > export HDF5=/usr/local/hdf5-1.8.14
> > > >> > export PATH=$PATH:${HDF5}/bin
> > > >> > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
> > > >> >
> > > >> > but when I have to use it with hdf5, it doesn't work.
> > > >>
> > > >> can you post the result of
> > > >>
> > > >> ls /usr/local/hdf5-1.8.14/bin
> > > >> ls /usr/local/hdf5-1.8.14/lib
> > > >>
> > > >>
> > > >> This would help to diagnose the problem. A few more questions:
> > > >> 1. How did you install hdf5? If you compiled it yourself you
should
> > make
> > > >> sure
> > > >> that you have enabled the parallel feature.
> > > >> 2. Is your code parallel? If not, you can use h5fc instead of
h5pfc
> > > >> 3. It also matters to match the fortran compiler used to compile
HDF5
> > and
> > > >> the
> > > >> one you use to build your code.
> > > >>
> > > >> Pierre
> > > >>
> > > >> >
> > > >> >
> > > >> > On Sun, Jul 5, 2015 at 1:20 PM, Elisabetta Strazzeri < > > > > >> > elisabetta.strazz@gmail.com> wrote:
> > > >> >
> > > >> > > Hi Pierre,
> > > >> > >
> > > >> > > the command : which h5pfc doesn't give me any location of the
> > > >> directory
> > > >> > > so I need to setup the shell variable Path and others.
> > > >> > > is there a tutorial of how to set the variables in the
> > bash_profile?
> > > >> > >
> > > >> > > thank you
> > > >> > > my kindest regards
> > > >> > > Elisabetta
> > > >> > >
> > > >> > > On Wed, Jul 1, 2015 at 8:55 PM, Pierre de Buyl < > > > > >> > > pierre.debuyl@chem.kuleuven.be> wrote:
> > > >> > >
> > > >> > >> Hi Elisabetta,
> > > >> > >>
> > > >> > >> The information you give is a bit light. If h5pfc is indeed
> > > >> installed, its
> > > >> > >> location will be returned by the command
> > > >> > >>
> > > >> > >> which h5pfc
> > > >> > >>
> > > >> > >> Note that depending on where you installed HDF5 on your
computer,
> > > >> you may
> > > >> > >> need
> > > >> > >> to setup your environment (the shell variables PATH and
others).
> > > >> > >>
> > > >> > >> Pierre
> > > >> > >>
> > > >> > >> On Wed, Jul 01, 2015 at 07:35:20PM +0300, Elisabetta > Strazzeri > > > wrote:
> > > >> > >> > Hello everyone!
> > > >> > >> >
> > > >> > >> > I’m working with a MacBook Pro OS X Yosemite Version
10.10.4
> > > >> > >> > I’ve installed h5pfc and I’m running a Fortran based
software,
> > but
> > > >> I
> > > >> > >> read this error:
> > > >> > >> >
> > > >> > >> > 19:18:elisabettastrazzeri@MacBook-Pro-di-Elisabetta
> > :FortranCode:$>
> > > >> make
> > > >> > >> > h5pfc -O3 -cpp -fno-range-check -ffree-line-length-none
> > > >> -ffast-math
> > > >> > >> -c parameters.F90
> > > >> > >> > make: h5pfc: No such file or directory
> > > >> > >> > make: *** [parameters.o] Error 1
> > > >> > >> >
> > > >> > >> > Where is the problem?
> > > >> > >> >
> > > >> > >> > Thank you very much
> > > >> > >> > My Kindest Regards
> > > >> > >> > Elisabetta
> > > >> > >>
> > > >> > >>
> > > >> > >> _______________________________________________
> > > >> > >> Hdf-forum is for HDF software users discussion.
> > > >> > >> Hdf-forum@lists.hdfgroup.org
> > > >> > >>
> > > >>
> >
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > > >> > >> Twitter: https://twitter.com/hdf5
> > > >> > >
> > > >> > >
> > > >> > >
> > > >>
> > > >> > _______________________________________________
> > > >> > Hdf-forum is for HDF software users discussion.
> > > >> > Hdf-forum@lists.hdfgroup.org
> > > >> >
> >
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > > >> > Twitter: https://twitter.com/hdf5
> > > >>
> > > >>
> > > >> --
> > > >> -----------------------------------------------------------
> > > >> Pierre de Buyl
> > > >> KU Leuven - Institute for Theoretical Physics
> > > >> T +32 16 3 27355
> > > >> W http://pdebuyl.be/
> > > >> -----------------------------------------------------------
> > > >>
> > > >> _______________________________________________
> > > >> Hdf-forum is for HDF software users discussion.
> > > >> Hdf-forum@lists.hdfgroup.org
> > > >>
> >
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > > >> Twitter: https://twitter.com/hdf5
> > > >>
> > > >
> > > >
> >
> > > _______________________________________________
> > > Hdf-forum is for HDF software users discussion.
> > > Hdf-forum@lists.hdfgroup.org
> > >
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > > Twitter: https://twitter.com/hdf5
> >
> >
> > --
> > -----------------------------------------------------------
> > Pierre de Buyl
> > KU Leuven - Institute for Theoretical Physics
> > T +32 16 3 27355
> > W http://pdebuyl.be/
> > -----------------------------------------------------------
> >
> > _______________________________________________
> > Hdf-forum is for HDF software users discussion.
> > Hdf-forum@lists.hdfgroup.org
> >
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> > Twitter: https://twitter.com/hdf5
> >> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> Hdf-forum@lists.hdfgroup.org
> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
> Twitter: https://twitter.com/hdf5--
-----------------------------------------------------------
Pierre de Buyl
KU Leuven - Institute for Theoretical Physics
T +32 16 3 27355
W http://pdebuyl.be/
-----------------------------------------------------------_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
