Disk Quota Exceeded Error

HDF5 Library
1

Hello Team,

I am running a simulation on an open-source software, DAMASK, on a supercomputer cluster. It generates the output in the form of an HDF5 file. However, I am getting a “Disk Quota Exceeded” error in creating the result file, although I am able to run the complete simulation.

The output file being generated isn’t appropriately bounded.

This is the complete error file :

Spack deployed by HPC-Tech C-DAC Pune

For better command line support, copy and paste the following, which will source the spack setup script:

source /home/apps/spack/share/spack/setup-env.sh

mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded mca_fbtl_posix_pwritev: error in writev:Disk quota exceeded vulcan_write_all: fbtl_pwritev failed vulcan_write_all: fbtl_pwritev failed vulcan_write_all: fbtl_pwritev failed vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in writev:Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in writev:Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in writev:Disk quota exceeded vulcan_write_all: fbtl_pwritev failed mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded mca_fbtl_posix_pwritev: error in (p)write(v):Disk quota exceeded

Can you clarify whether it is an HDF5 file write-related error ?

2

HDF5 error messages look like this:

HDF5-DIAG: Error detected in HDF5 (1.6.4) thread 0.
  #000: H5T.c line 462 in H5Tclose(): predefined datatype
    major: Function argument
    minor: Bad value

Your error message looks like an Open MPI error message. If you are using the parallel HDF5 and the MPI-IO VFD with Open MPI, then this might be triggered by an HDF5 library API, but it’s not evident which one. H5Dwrite is a candidate, but not the only one.

G.