I am getting the following error message when compiling hdf5 with a parallel option:
checking whether to clear file buffers... yes
checking whether a memory checking tool will be used... no
checking for parallel support files... provided by compiler
checking for MPI_Init in -lmpi... no
checking for MPI_Init in -lmpich... no
checking for
include 'mpif.h'
integer:: ierr
call mpi_file_open( ierr ) in -lmpi... ./configure: line 27480: ${ac_cv_lib_mpi_ ____________include__mpif_h_ ____________integer___ierr ____________call_mpi_file_open__ierr__+:}: bad substitution
./configure: line 27496: ac_cv_lib_mpi_: command not found
./configure: line 27497: ____________include__mpif_h_: command not found
./configure: line 27498: ____________integer___ierr: command not found
./configure: line 27502: ____________include__mpif_h_: command not found
yes
checking prefix for running on one processor...
checking prefix for running in parallel...
checking whether a simple MPI-IO program can be linked... no
configure: error: unable to link a simple MPI-IO application
Hi Rob:
One thing that I noticed is that in the errors below, configure is looking for mpi_file_open in mpif.h. Checking my installation of mpich2, the subroutine mph_file_open is located in mpio.h and not in mpif.h. Do you think that this could explain the error I get?
Thanks,
Laura
checking for
include 'mpif.h'
integer:: ierr
call mpi_file_open( ierr ) in -lmpi... ./configure: line 27480: ${ac_cv_lib_mpi_ ____________include__mpif_h_ ____________integer___ierr ____________call_mpi_file_open__ierr__+:}: bad substitution
./configure: line 27496: ac_cv_lib_mpi_: command not found
./configure: line 27497: ____________include__mpif_h_: command not found
···
On Sep 5, 2012, at 12:06 PM, Rob Latham wrote:
On Wed, Sep 05, 2012 at 11:23:59AM -0600, ldfowler wrote:
Hi Mohamad:
Thanks for the reply. Yes, I installed mpich2 on my machine. I tested that mpi worked using the c and f90 examples that was provided, and it worked well. I do not understand the line:
call mpi_file_open( ierr ) in -lmpi... ./configure: line 27480: ${ac_cv_lib_mpi_ ____________include__mpif_h_ ____________integer___ierr ____________call_mpi_file_open__ierr__+:}: bad substitution
./configure: line 27496: ac_cv_lib_mpi_: command not found
Is it trying to substitute something that it does not find?
Laura
···
On Sep 5, 2012, at 12:35 PM, Mohamad Chaarawi wrote:
do you have MPI installed on your machine?
does compiling a simple MPI program using mpicc work?
I do not see anything wrong with your configure line if you did not use sudo..
Mohamad
On 9/5/2012 1:31 PM, ldfowler wrote:
Hi Rob:
Thanks for the quick reply. I got the same error message when I tried to "configure" locally without sudo? Any other idea?
Thanks,
Laura
On Sep 5, 2012, at 12:06 PM, Rob Latham wrote:
On Wed, Sep 05, 2012 at 11:23:59AM -0600, ldfowler wrote:
