We are currently trying to compile my fortran project with ifort while linking to hdf5. I am failing at compiling with cmake, which I would like to do, but I finally managed to compile with a single line in bash. I attach my CMakeLists.txt (which works for gfortran) and the bash command. If anyone can give some hints on how to link to hdf5 successfully, I would be very grateful!
As a side note, it appears that on the cluster I am trying to use, only the h5pfc compiler is installed, not h5fc. I do not need mpi support, so if it is possible to skip the mpi linking, I would be happy with that - our end results are in the sub-GB region anyway. We are planning to extend our program to use MPI, but we do not need to write from more than one MPI process.
##################################################
# Library linking is handled below
##################################################
# Common libraries for all compilers
target_link_libraries (Rayleigh2D Rayleigh2D_Module FFT_Modules fftw3 hdf5 hdf5_hl hdf5_fortran hdf5hl_fortran z)
I think the target: Rayleigh2D_Module needs to be defined before use.
Allen
Hi!
We are currently trying to compile my fortran project with ifort while linking to hdf5. I am failing at compiling with cmake, which I would like to do, but I finally managed to compile with a single line in bash. I attach my CMakeLists.txt (which works for gfortran) and the bash command. If anyone can give some hints on how to link to hdf5 successfully, I would be very grateful!
As a side note, it appears that on the cluster I am trying to use, only the h5pfc compiler is installed, not h5fc. I do not need mpi support, so if it is possible to skip the mpi linking, I would be happy with that - our end results are in the sub-GB region anyway. We are planning to extend our program to use MPI, but we do not need to write from more than one MPI process.
Hi, this did nothing. My compilation error remains the same. It is attached below. Also, I should note that before we started using HDF5 (simply dumping the results to an ASCII file), these errors did not appear.
But thanks for the suggestion.
Cheers,
Paul.
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5close_types_c_':
H5_f.c:(.text+0x34): undefined reference to `H5Tclose'
H5_f.c:(.text+0x78): undefined reference to `H5Tclose'
H5_f.c:(.text+0xa8): undefined reference to `H5Tclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5open_c_':
H5_f.c:(.text+0x102): undefined reference to `H5open'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5close_c_':
H5_f.c:(.text+0x122): undefined reference to `H5close'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5get_libversion_c_':
H5_f.c:(.text+0x162): undefined reference to `H5get_libversion'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5check_version_c_':
H5_f.c:(.text+0x1a8): undefined reference to `H5check_version'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5garbage_collect_c_':
H5_f.c:(.text+0x1b2): undefined reference to `H5garbage_collect'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5dont_atexit_c_':
H5_f.c:(.text+0x1d2): undefined reference to `H5dont_atexit'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5init_flags_c_':
H5_f.c:(.text+0x2c0): undefined reference to `H5check_version'
H5_f.c:(.text+0x2db): undefined reference to `H5check_version'
H5_f.c:(.text+0x2f7): undefined reference to `H5check_version'
H5_f.c:(.text+0x313): undefined reference to `H5check_version'
H5_f.c:(.text+0x32f): undefined reference to `H5check_version'
H5_f.c:(.text+0x427): undefined reference to `H5FD_core_init'
H5_f.c:(.text+0x42f): undefined reference to `H5FD_family_init'
H5_f.c:(.text+0x438): undefined reference to `H5FD_log_init'
H5_f.c:(.text+0x441): undefined reference to `H5FD_mpio_init'
H5_f.c:(.text+0x44a): undefined reference to `H5FD_multi_init'
H5_f.c:(.text+0x453): undefined reference to `H5FD_sec2_init'
H5_f.c:(.text+0x45c): undefined reference to `H5FD_stdio_init'
H5_f.c:(.text+0x578): undefined reference to `H5open'
H5_f.c:(.text+0x583): undefined reference to `H5P_CLS_FILE_CREATE_g'
H5_f.c:(.text+0x58b): undefined reference to `H5open'
H5_f.c:(.text+0x591): undefined reference to `H5P_CLS_FILE_ACCESS_g'
H5_f.c:(.text+0x59a): undefined reference to `H5open'
H5_f.c:(.text+0x5a0): undefined reference to `H5P_CLS_DATASET_CREATE_g'
H5_f.c:(.text+0x5a9): undefined reference to `H5open'
H5_f.c:(.text+0x5af): undefined reference to `H5P_CLS_DATASET_XFER_g'
H5_f.c:(.text+0x5b8): undefined reference to `H5open'
H5_f.c:(.text+0x5be): undefined reference to `H5P_CLS_FILE_MOUNT_g'
H5_f.c:(.text+0x5cf): undefined reference to `H5open'
H5_f.c:(.text+0x5d5): undefined reference to `H5P_CLS_ROOT_g'
H5_f.c:(.text+0x5de): undefined reference to `H5open'
H5_f.c:(.text+0x5e4): undefined reference to `H5P_CLS_OBJECT_CREATE_g'
H5_f.c:(.text+0x5ed): undefined reference to `H5open'
H5_f.c:(.text+0x5f3): undefined reference to `H5P_CLS_DATASET_ACCESS_g'
H5_f.c:(.text+0x5fc): undefined reference to `H5open'
H5_f.c:(.text+0x602): undefined reference to `H5P_CLS_GROUP_CREATE_g'
H5_f.c:(.text+0x60b): undefined reference to `H5open'
H5_f.c:(.text+0x611): undefined reference to `H5P_CLS_GROUP_ACCESS_g'
H5_f.c:(.text+0x61a): undefined reference to `H5open'
H5_f.c:(.text+0x620): undefined reference to `H5P_CLS_DATATYPE_CREATE_g'
H5_f.c:(.text+0x629): undefined reference to `H5open'
H5_f.c:(.text+0x62f): undefined reference to `H5P_CLS_DATATYPE_ACCESS_g'
H5_f.c:(.text+0x638): undefined reference to `H5open'
H5_f.c:(.text+0x63e): undefined reference to `H5P_CLS_STRING_CREATE_g'
H5_f.c:(.text+0x647): undefined reference to `H5open'
H5_f.c:(.text+0x64d): undefined reference to `H5P_CLS_ATTRIBUTE_CREATE_g'
H5_f.c:(.text+0x656): undefined reference to `H5open'
H5_f.c:(.text+0x65c): undefined reference to `H5P_CLS_OBJECT_COPY_g'
H5_f.c:(.text+0x665): undefined reference to `H5open'
H5_f.c:(.text+0x66b): undefined reference to `H5P_CLS_LINK_CREATE_g'
H5_f.c:(.text+0x674): undefined reference to `H5open'
H5_f.c:(.text+0x689): undefined reference to `H5P_CLS_LINK_ACCESS_g'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5init_types_c_':
H5_f.c:(.text+0x9f1): undefined reference to `H5open'
H5_f.c:(.text+0x9f7): undefined reference to `H5T_NATIVE_INT_g'
H5_f.c:(.text+0x9fc): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa0c): undefined reference to `H5open'
H5_f.c:(.text+0xa12): undefined reference to `H5T_NATIVE_FLOAT_g'
H5_f.c:(.text+0xa17): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa27): undefined reference to `H5open'
H5_f.c:(.text+0xa2d): undefined reference to `H5T_NATIVE_DOUBLE_g'
H5_f.c:(.text+0xa32): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa42): undefined reference to `H5open'
H5_f.c:(.text+0xa48): undefined reference to `H5T_FORTRAN_S1_g'
H5_f.c:(.text+0xa4d): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa63): undefined reference to `H5Tset_size'
H5_f.c:(.text+0xa77): undefined reference to `H5Tset_strpad'
H5_f.c:(.text+0xa87): undefined reference to `H5open'
H5_f.c:(.text+0xa8d): undefined reference to `H5T_STD_REF_OBJ_g'
H5_f.c:(.text+0xa92): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xaa2): undefined reference to `H5open'
H5_f.c:(.text+0xaa8): undefined reference to `H5T_STD_REF_DSETREG_g'
H5_f.c:(.text+0xaad): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xabd): undefined reference to `H5open'
H5_f.c:(.text+0xac3): undefined reference to `H5T_NATIVE_SCHAR_g'
H5_f.c:(.text+0xac8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xad8): undefined reference to `H5open'
H5_f.c:(.text+0xade): undefined reference to `H5T_NATIVE_SHORT_g'
H5_f.c:(.text+0xae3): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xaf3): undefined reference to `H5open'
H5_f.c:(.text+0xaf9): undefined reference to `H5T_NATIVE_INT_g'
H5_f.c:(.text+0xafe): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb0e): undefined reference to `H5open'
H5_f.c:(.text+0xb14): undefined reference to `H5T_NATIVE_LLONG_g'
H5_f.c:(.text+0xb19): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb29): undefined reference to `H5open'
H5_f.c:(.text+0xb2f): undefined reference to `H5T_NATIVE_FLOAT_g'
H5_f.c:(.text+0xb34): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb44): undefined reference to `H5open'
H5_f.c:(.text+0xb4a): undefined reference to `H5T_NATIVE_DOUBLE_g'
H5_f.c:(.text+0xb4f): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb5f): undefined reference to `H5open'
H5_f.c:(.text+0xb65): undefined reference to `H5T_NATIVE_LDOUBLE_g'
H5_f.c:(.text+0xb6a): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb7a): undefined reference to `H5open'
H5_f.c:(.text+0xb80): undefined reference to `H5T_IEEE_F32BE_g'
H5_f.c:(.text+0xb85): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb96): undefined reference to `H5open'
H5_f.c:(.text+0xb9c): undefined reference to `H5T_IEEE_F32LE_g'
H5_f.c:(.text+0xba1): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbb3): undefined reference to `H5open'
H5_f.c:(.text+0xbb9): undefined reference to `H5T_IEEE_F64BE_g'
H5_f.c:(.text+0xbbe): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbd0): undefined reference to `H5open'
H5_f.c:(.text+0xbd6): undefined reference to `H5T_IEEE_F64LE_g'
H5_f.c:(.text+0xbdb): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbed): undefined reference to `H5open'
H5_f.c:(.text+0xbf3): undefined reference to `H5T_STD_I8BE_g'
H5_f.c:(.text+0xbf8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc09): undefined reference to `H5open'
H5_f.c:(.text+0xc0f): undefined reference to `H5T_STD_I8LE_g'
H5_f.c:(.text+0xc14): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc25): undefined reference to `H5open'
H5_f.c:(.text+0xc2b): undefined reference to `H5T_STD_I16BE_g'
H5_f.c:(.text+0xc30): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc41): undefined reference to `H5open'
H5_f.c:(.text+0xc47): undefined reference to `H5T_STD_I16LE_g'
H5_f.c:(.text+0xc4c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc5d): undefined reference to `H5open'
H5_f.c:(.text+0xc63): undefined reference to `H5T_STD_I32BE_g'
H5_f.c:(.text+0xc68): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc79): undefined reference to `H5open'
H5_f.c:(.text+0xc7f): undefined reference to `H5T_STD_I32LE_g'
H5_f.c:(.text+0xc84): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc95): undefined reference to `H5open'
H5_f.c:(.text+0xc9b): undefined reference to `H5T_STD_I64BE_g'
H5_f.c:(.text+0xca0): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xcb1): undefined reference to `H5open'
H5_f.c:(.text+0xcb7): undefined reference to `H5T_STD_I64LE_g'
H5_f.c:(.text+0xcbc): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xccd): undefined reference to `H5open'
H5_f.c:(.text+0xcd3): undefined reference to `H5T_STD_U8BE_g'
H5_f.c:(.text+0xcd8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xce9): undefined reference to `H5open'
H5_f.c:(.text+0xcef): undefined reference to `H5T_STD_U8LE_g'
H5_f.c:(.text+0xcf4): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd05): undefined reference to `H5open'
H5_f.c:(.text+0xd0b): undefined reference to `H5T_STD_U16BE_g'
H5_f.c:(.text+0xd10): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd21): undefined reference to `H5open'
H5_f.c:(.text+0xd27): undefined reference to `H5T_STD_U16LE_g'
H5_f.c:(.text+0xd2c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd3d): undefined reference to `H5open'
H5_f.c:(.text+0xd43): undefined reference to `H5T_STD_U32BE_g'
H5_f.c:(.text+0xd48): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd59): undefined reference to `H5open'
H5_f.c:(.text+0xd5f): undefined reference to `H5T_STD_U32LE_g'
H5_f.c:(.text+0xd64): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd71): undefined reference to `H5open'
H5_f.c:(.text+0xd77): undefined reference to `H5T_STD_U64BE_g'
H5_f.c:(.text+0xd7c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd89): undefined reference to `H5open'
H5_f.c:(.text+0xd8f): undefined reference to `H5T_STD_U64LE_g'
H5_f.c:(.text+0xd94): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xda1): undefined reference to `H5open'
H5_f.c:(.text+0xda7): undefined reference to `H5T_C_S1_g'
H5_f.c:(.text+0xdac): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xdc3): undefined reference to `H5Tset_size'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dcreate_c_':
H5Df.c:(.text+0x5c): undefined reference to `H5Dcreate2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dopen_c_':
H5Df.c:(.text+0xc9): undefined reference to `H5Dopen2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_c_':
H5Df.c:(.text+0xfd): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_s_c_':
H5Df.c:(.text+0x12d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_1_c_':
H5Df.c:(.text+0x15d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_2_c_':
H5Df.c:(.text+0x18d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_3_c_':
H5Df.c:(.text+0x1bd): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o):H5Df.c:(.text+0x1ed): more undefined references to `H5Dwrite' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_c_':
H5Df.c:(.text+0x8dd): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_s_c_':
H5Df.c:(.text+0x90d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_1_c_':
H5Df.c:(.text+0x93d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_2_c_':
H5Df.c:(.text+0x96d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_3_c_':
H5Df.c:(.text+0x99d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o):H5Df.c:(.text+0x9cd): more undefined references to `H5Dread' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dclose_c_':
H5Df.c:(.text+0x10b4): undefined reference to `H5Dclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_space_c_':
H5Df.c:(.text+0x10d7): undefined reference to `H5Dget_space'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_type_c_':
H5Df.c:(.text+0x10f7): undefined reference to `H5Dget_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_create_plist_c_':
H5Df.c:(.text+0x1117): undefined reference to `H5Dget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dset_extent_c_':
H5Df.c:(.text+0x114a): undefined reference to `H5Dget_space'
H5Df.c:(.text+0x115e): undefined reference to `H5Sget_simple_extent_ndims'
H5Df.c:(.text+0x1169): undefined reference to `H5Sclose'
H5Df.c:(.text+0x11ec): undefined reference to `H5Dset_extent'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_storage_size_c_':
H5Df.c:(.text+0x1237): undefined reference to `H5Dget_storage_size'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dvlen_get_max_len_c_':
H5Df.c:(.text+0x1270): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x12a1): undefined reference to `H5Dread'
H5Df.c:(.text+0x12d8): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_integer_c_':
H5Df.c:(.text+0x1535): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_integer_c_':
H5Df.c:(.text+0x15bb): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x1611): undefined reference to `H5Dread'
H5Df.c:(.text+0x1678): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_string_c_':
H5Df.c:(.text+0x1792): undefined reference to `H5Dwrite'
H5Df.c:(.text+0x17b0): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_string_c_':
H5Df.c:(.text+0x1862): undefined reference to `H5Dread'
H5Df.c:(.text+0x1965): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_real_c_':
H5Df.c:(.text+0x1c55): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_real_c_':
H5Df.c:(.text+0x1cdb): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x1d31): undefined reference to `H5Dread'
H5Df.c:(.text+0x1d98): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfillc_c_':
H5Df.c:(.text+0x1dd0): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_c_':
H5Df.c:(.text+0x1e00): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_integer_c_':
H5Df.c:(.text+0x1e30): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_real_c_':
H5Df.c:(.text+0x1e60): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_double_c_':
H5Df.c:(.text+0x1e90): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_space_status_c_':
H5Df.c:(.text+0x1ebf): undefined reference to `H5Dget_space_status'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dcreate_anon_c_':
H5Df.c:(.text+0x1ef1): undefined reference to `H5Dcreate_anon'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_access_plist_c_':
H5Df.c:(.text+0x1f17): undefined reference to `H5Dget_access_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fcreate_c_':
H5Ff.c:(.text+0x30): undefined reference to `H5Fcreate'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fflush_c_':
H5Ff.c:(.text+0x66): undefined reference to `H5Fflush'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fmount_c_':
H5Ff.c:(.text+0xb1): undefined reference to `H5Fmount'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5funmount_c_':
H5Ff.c:(.text+0x115): undefined reference to `H5Funmount'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fopen_c_':
H5Ff.c:(.text+0x178): undefined reference to `H5Fopen'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5freopen_c_':
H5Ff.c:(.text+0x1b7): undefined reference to `H5Freopen'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_create_plist_c_':
H5Ff.c:(.text+0x1d7): undefined reference to `H5Fget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_access_plist_c_':
H5Ff.c:(.text+0x1f7): undefined reference to `H5Fget_access_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fis_hdf5_c_':
H5Ff.c:(.text+0x22c): undefined reference to `H5Fis_hdf5'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fclose_c_':
H5Ff.c:(.text+0x264): undefined reference to `H5Fclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_obj_count_c_':
H5Ff.c:(.text+0x28a): undefined reference to `H5Fget_obj_count'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_obj_ids_c_':
H5Ff.c:(.text+0x2ec): undefined reference to `H5Fget_obj_ids'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_freespace_c_':
H5Ff.c:(.text+0x427): undefined reference to `H5Fget_freespace'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_name_c_':
H5Ff.c:(.text+0x486): undefined reference to `H5Fget_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_filesize_c_':
H5Ff.c:(.text+0x4df): undefined reference to `H5Fget_filesize'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gcreate_c_':
H5Gf.c:(.text+0x3f): undefined reference to `H5open'
H5Gf.c:(.text+0x45): undefined reference to `H5P_CLS_GROUP_CREATE_g'
H5Gf.c:(.text+0x4a): undefined reference to `H5Pcreate'
H5Gf.c:(.text+0x5e): undefined reference to `H5Pset_local_heap_size_hint'
H5Gf.c:(.text+0x76): undefined reference to `H5Gcreate2'
H5Gf.c:(.text+0x8e): undefined reference to `H5Pclose'
H5Gf.c:(.text+0xcb): undefined reference to `H5Gcreate2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gopen_c_':
H5Gf.c:(.text+0x119): undefined reference to `H5Gopen2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_obj_info_idx_c_':
H5Gf.c:(.text+0x1aa): undefined reference to `H5Gopen2'
H5Gf.c:(.text+0x1ca): undefined reference to `H5Lget_name_by_idx'
H5Gf.c:(.text+0x1f2): undefined reference to `H5Oget_info_by_idx'
H5Gf.c:(.text+0x225): undefined reference to `H5Gclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gn_members_c_':
H5Gf.c:(.text+0x29b): undefined reference to `H5Gget_info_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gclose_c_':
H5Gf.c:(.text+0x2d4): undefined reference to `H5Gclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5glink_c_':
H5Gf.c:(.text+0x34b): undefined reference to `H5Lcreate_hard'
H5Gf.c:(.text+0x369): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5glink2_c_':
H5Gf.c:(.text+0x405): undefined reference to `H5Lcreate_hard'
H5Gf.c:(.text+0x422): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gunlink_c_':
H5Gf.c:(.text+0x48e): undefined reference to `H5Ldelete'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gmove_c_':
H5Gf.c:(.text+0x513): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gmove2_c_':
H5Gf.c:(.text+0x5a8): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_linkval_c_':
H5Gf.c:(.text+0x662): undefined reference to `H5Lget_val'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gset_comment_c_':
H5Gf.c:(.text+0x6ed): undefined reference to `H5Oset_comment_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_comment_c_':
H5Gf.c:(.text+0x78c): undefined reference to `H5Oget_comment_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gcreate_anon_c_':
H5Gf.c:(.text+0x7dc): undefined reference to `H5Gcreate_anon'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_create_plist_c_':
H5Gf.c:(.text+0x807): undefined reference to `H5Gget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_c_':
H5Gf.c:(.text+0x843): undefined reference to `H5Gget_info'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_by_idx_c_':
H5Gf.c:(.text+0x8fe): undefined reference to `H5Gget_info_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_by_name_c_':
H5Gf.c:(.text+0x9c6): undefined reference to `H5Gget_info_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcopy_c_':
H5Lf.c:(.text+0x66): undefined reference to `H5Lcopy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_external_c_':
H5Lf.c:(.text+0x12a): undefined reference to `H5Lcreate_external'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5ldelete_c_':
H5Lf.c:(.text+0x1a0): undefined reference to `H5Ldelete'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_soft_c_':
H5Lf.c:(.text+0x22c): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_hard_c_':
H5Lf.c:(.text+0x2d6): undefined reference to `H5Lcreate_hard'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5ldelete_by_idx_c_':
H5Lf.c:(.text+0x35a): undefined reference to `H5Ldelete_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lexists_c_':
H5Lf.c:(.text+0x3c7): undefined reference to `H5Lexists'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_info_c_':
H5Lf.c:(.text+0x447): undefined reference to `H5Lget_info'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_info_by_idx_c_':
H5Lf.c:(.text+0x511): undefined reference to `H5Lget_info_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lis_registered_c_':
H5Lf.c:(.text+0x5a4): undefined reference to `H5Lis_registered'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lmove_c_':
H5Lf.c:(.text+0x616): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_name_by_idx_c_':
H5Lf.c:(.text+0x6df): undefined reference to `H5Lget_name_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_val_c_':
H5Lf.c:(.text+0x773): undefined reference to `H5Lget_val'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5screate_simple_c_':
H5Sf.c:(.text+0xde): undefined reference to `H5Screate_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sclose_c_':
H5Sf.c:(.text+0x114): undefined reference to `H5Sclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5screate_c_':
H5Sf.c:(.text+0x137): undefined reference to `H5Screate'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5scopy_c_':
H5Sf.c:(.text+0x157): undefined reference to `H5Scopy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_hyper_nblocks_c_':
H5Sf.c:(.text+0x177): undefined reference to `H5Sget_select_hyper_nblocks'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_elem_npoints_c_':
H5Sf.c:(.text+0x197): undefined reference to `H5Sget_select_elem_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_hyper_blocklist_c_':
H5Sf.c:(.text+0x1cc): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x211): undefined reference to `H5Sget_select_hyper_blocklist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_bounds_c_':
H5Sf.c:(.text+0x400): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x427): undefined reference to `H5Sget_select_bounds'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_elem_pointlist_c_':
H5Sf.c:(.text+0x68b): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x6cb): undefined reference to `H5Sget_select_elem_pointlist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_all_c_':
H5Sf.c:(.text+0x744): undefined reference to `H5Sselect_all'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_none_c_':
H5Sf.c:(.text+0x764): undefined reference to `H5Sselect_none'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_valid_c_':
H5Sf.c:(.text+0x787): undefined reference to `H5Sselect_valid'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_npoints_c_':
H5Sf.c:(.text+0x7a7): undefined reference to `H5Sget_simple_extent_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_npoints_c_':
H5Sf.c:(.text+0x7c7): undefined reference to `H5Sget_select_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_ndims_c_':
H5Sf.c:(.text+0x7e7): undefined reference to `H5Sget_simple_extent_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_type_c_':
H5Sf.c:(.text+0x807): undefined reference to `H5Sget_simple_extent_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5soffset_simple_c_':
H5Sf.c:(.text+0x835): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x8b3): undefined reference to `H5Soffset_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sset_extent_simple_c_':
H5Sf.c:(.text+0x9c8): undefined reference to `H5Sset_extent_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_dims_c_':
H5Sf.c:(.text+0xa0b): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xa32): undefined reference to `H5Sget_simple_extent_dims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sis_simple_c_':
H5Sf.c:(.text+0xb97): undefined reference to `H5Sis_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sextent_copy_c_':
H5Sf.c:(.text+0xbb6): undefined reference to `H5Sextent_copy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sset_extent_none_c_':
H5Sf.c:(.text+0xbd4): undefined reference to `H5Sset_extent_none'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_hyperslab_c_':
H5Sf.c:(.text+0xc17): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xd5f): undefined reference to `H5Sselect_hyperslab'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_type_c_':
H5Sf.c:(.text+0xda7): undefined reference to `H5Sget_select_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_elements_c_':
H5Sf.c:(.text+0xddf): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xf39): undefined reference to `H5Sselect_elements'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sdecode_c_':
H5Sf.c:(.text+0xf85): undefined reference to `H5Sdecode'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sencode_c_':
H5Sf.c:(.text+0xfc5): undefined reference to `H5Sencode'
H5Sf.c:(.text+0x100c): undefined reference to `H5Sencode'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sextent_equal_c_':
H5Sf.c:(.text+0x1049): undefined reference to `H5Sextent_equal'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_c_':
H5LTfc.c:(.text+0x148): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int1_c_':
H5LTfc.c:(.text+0x308): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int2_c_':
H5LTfc.c:(.text+0x4c8): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int3_c_':
H5LTfc.c:(.text+0x688): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_fl1_c_':
H5LTfc.c:(.text+0x848): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o):H5LTfc.c:(.text+0xa08): more undefined references to `H5LTmake_dataset' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_c_':
H5LTfc.c:(.text+0x2183): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int1_c_':
H5LTfc.c:(.text+0x21f3): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int2_c_':
H5LTfc.c:(.text+0x2263): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int3_c_':
H5LTfc.c:(.text+0x22d3): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_fl1_c_':
H5LTfc.c:(.text+0x2343): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o):H5LTfc.c:(.text+0x23b3): more undefined references to `H5LTread_dataset' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_string_c_':
H5LTfc.c:(.text+0x29ee): undefined reference to `H5LTmake_dataset_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_string_c_':
H5LTfc.c:(.text+0x2a5f): undefined reference to `H5LTread_dataset_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_int_c_':
H5LTfc.c:(.text+0x2b04): undefined reference to `H5LTset_attribute_int'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_float_c_':
H5LTfc.c:(.text+0x2bb4): undefined reference to `H5LTset_attribute_float'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_double_c_':
H5LTfc.c:(.text+0x2c64): undefined reference to `H5LTset_attribute_double'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_string_c_':
H5LTfc.c:(.text+0x2d2a): undefined reference to `H5LTset_attribute_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_int_c_':
H5LTfc.c:(.text+0x2def): undefined reference to `H5LTget_attribute_int'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_float_c_':
H5LTfc.c:(.text+0x2e8f): undefined reference to `H5LTget_attribute_float'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_double_c_':
H5LTfc.c:(.text+0x2f2f): undefined reference to `H5LTget_attribute_double'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_string_c_':
H5LTfc.c:(.text+0x2fcf): undefined reference to `H5LTget_attribute_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_dataset_ndims_c_':
H5LTfc.c:(.text+0x3041): undefined reference to `H5LTget_dataset_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltfind_dataset_c_':
H5LTfc.c:(.text+0x30a0): undefined reference to `H5LTfind_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_dataset_info_c_':
H5LTfc.c:(.text+0x3121): undefined reference to `H5LTget_dataset_info'
H5LTfc.c:(.text+0x3151): undefined reference to `H5LTget_dataset_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_ndims_c_':
H5LTfc.c:(.text+0x3303): undefined reference to `H5LTget_attribute_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_info_c_':
H5LTfc.c:(.text+0x33c7): undefined reference to `H5LTget_attribute_info'
H5LTfc.c:(.text+0x340c): undefined reference to `H5LTget_attribute_ndims'
make[2]: *** [Rayleigh2D] Error 1
make[1]: *** [CMakeFiles/Rayleigh2D.dir/all] Error 2
make: *** [all] Error 2
···
On 23. feb. 2011, at 04.12, Allen D Byrne wrote:
Paul,
Looking at your CMakeLists.txt file - does moving the following:
add_library(Rayleigh2D_Module
Rayleigh2D_Modules/Rayleigh2D_Module.f90
Rayleigh2D_Modules/Rayleigh2D_Utils.f90
Rayleigh2D_Modules/SFL_Error_Handling.f90
Rayleigh2D_Modules/SFL_Fourier.f90
Rayleigh2D_Modules/SFL_ISO_Fortran_Env.f90
Rayleigh2D_Modules/SFL_Logical_Units.f90
Rayleigh2D_Modules/constants.f90
Rayleigh2D_Modules/derived_type_module.f90
Rayleigh2D_Modules/surface_correlated_module.f90
Rayleigh2D_Modules/surface_util_module.f90
Rayleigh2D_Modules/zbcg2_module.f90
Rayleigh2D_Modules/BiCGstab_module.f90
Rayleigh2D_Modules/R_save.f90
Rayleigh2D_Modules/version.f90
)
above the following help?
##################################################
# Library linking is handled below
##################################################
# Common libraries for all compilers
target_link_libraries (Rayleigh2D Rayleigh2D_Module FFT_Modules fftw3 hdf5 hdf5_hl hdf5_fortran hdf5hl_fortran z)
I think the target: Rayleigh2D_Module needs to be defined before use.
Allen
My guess is (assuming you have set your compiler to h5pfc in cmake) that the link order is wrong. Cmake is adding all your stuff at the end of the link line, but you need it before the link of hdf5/mpi etc etc
I don't use the h5pfc compiler wrapper, but I set things up as follows - this help assumes you are using cmake to build hdf5, if not, then I can't help you.
# FIND_PACKAGE(HDF5 "1.8.5" REQUIRED NO_MODULE PATHS "$ENV{ProgramFiles}/HDF5") assumes you are on windows (drop the PATHS $ENV{...} and enter the path to hdf5-config-version.cmake manually in cmake gui (such as /apps/eiger/hdf5/1.8.7/gcc-ifort/lib/cmake/hdf5-1.8.7/), basically where you set cmake install path when you compiled hdf5 + the lib/blah/blah
Paul,
Looking at your CMakeLists.txt file - does moving the following:
add_library(Rayleigh2D_Module
Rayleigh2D_Modules/Rayleigh2D_Module.f90
Rayleigh2D_Modules/Rayleigh2D_Utils.f90
Rayleigh2D_Modules/SFL_Error_Handling.f90
Rayleigh2D_Modules/SFL_Fourier.f90
Rayleigh2D_Modules/SFL_ISO_Fortran_Env.f90
Rayleigh2D_Modules/SFL_Logical_Units.f90
Rayleigh2D_Modules/constants.f90
Rayleigh2D_Modules/derived_type_module.f90
Rayleigh2D_Modules/surface_correlated_module.f90
Rayleigh2D_Modules/surface_util_module.f90
Rayleigh2D_Modules/zbcg2_module.f90
Rayleigh2D_Modules/BiCGstab_module.f90
Rayleigh2D_Modules/R_save.f90
Rayleigh2D_Modules/version.f90
)
above the following help?
##################################################
# Library linking is handled below
##################################################
# Common libraries for all compilers
target_link_libraries (Rayleigh2D Rayleigh2D_Module FFT_Modules fftw3 hdf5 hdf5_hl hdf5_fortran hdf5hl_fortran z)
I think the target: Rayleigh2D_Module needs to be defined before use.
Allen
Hi, this did nothing. My compilation error remains the same. It is attached below. Also, I should note that before we started using HDF5 (simply dumping the results to an ASCII file), these errors did not appear.
But thanks for the suggestion.
Cheers,
Paul.
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5close_types_c_':
H5_f.c:(.text+0x34): undefined reference to `H5Tclose'
H5_f.c:(.text+0x78): undefined reference to `H5Tclose'
H5_f.c:(.text+0xa8): undefined reference to `H5Tclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5open_c_':
H5_f.c:(.text+0x102): undefined reference to `H5open'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5close_c_':
H5_f.c:(.text+0x122): undefined reference to `H5close'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5get_libversion_c_':
H5_f.c:(.text+0x162): undefined reference to `H5get_libversion'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5check_version_c_':
H5_f.c:(.text+0x1a8): undefined reference to `H5check_version'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5garbage_collect_c_':
H5_f.c:(.text+0x1b2): undefined reference to `H5garbage_collect'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5dont_atexit_c_':
H5_f.c:(.text+0x1d2): undefined reference to `H5dont_atexit'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5init_flags_c_':
H5_f.c:(.text+0x2c0): undefined reference to `H5check_version'
H5_f.c:(.text+0x2db): undefined reference to `H5check_version'
H5_f.c:(.text+0x2f7): undefined reference to `H5check_version'
H5_f.c:(.text+0x313): undefined reference to `H5check_version'
H5_f.c:(.text+0x32f): undefined reference to `H5check_version'
H5_f.c:(.text+0x427): undefined reference to `H5FD_core_init'
H5_f.c:(.text+0x42f): undefined reference to `H5FD_family_init'
H5_f.c:(.text+0x438): undefined reference to `H5FD_log_init'
H5_f.c:(.text+0x441): undefined reference to `H5FD_mpio_init'
H5_f.c:(.text+0x44a): undefined reference to `H5FD_multi_init'
H5_f.c:(.text+0x453): undefined reference to `H5FD_sec2_init'
H5_f.c:(.text+0x45c): undefined reference to `H5FD_stdio_init'
H5_f.c:(.text+0x578): undefined reference to `H5open'
H5_f.c:(.text+0x583): undefined reference to `H5P_CLS_FILE_CREATE_g'
H5_f.c:(.text+0x58b): undefined reference to `H5open'
H5_f.c:(.text+0x591): undefined reference to `H5P_CLS_FILE_ACCESS_g'
H5_f.c:(.text+0x59a): undefined reference to `H5open'
H5_f.c:(.text+0x5a0): undefined reference to `H5P_CLS_DATASET_CREATE_g'
H5_f.c:(.text+0x5a9): undefined reference to `H5open'
H5_f.c:(.text+0x5af): undefined reference to `H5P_CLS_DATASET_XFER_g'
H5_f.c:(.text+0x5b8): undefined reference to `H5open'
H5_f.c:(.text+0x5be): undefined reference to `H5P_CLS_FILE_MOUNT_g'
H5_f.c:(.text+0x5cf): undefined reference to `H5open'
H5_f.c:(.text+0x5d5): undefined reference to `H5P_CLS_ROOT_g'
H5_f.c:(.text+0x5de): undefined reference to `H5open'
H5_f.c:(.text+0x5e4): undefined reference to `H5P_CLS_OBJECT_CREATE_g'
H5_f.c:(.text+0x5ed): undefined reference to `H5open'
H5_f.c:(.text+0x5f3): undefined reference to `H5P_CLS_DATASET_ACCESS_g'
H5_f.c:(.text+0x5fc): undefined reference to `H5open'
H5_f.c:(.text+0x602): undefined reference to `H5P_CLS_GROUP_CREATE_g'
H5_f.c:(.text+0x60b): undefined reference to `H5open'
H5_f.c:(.text+0x611): undefined reference to `H5P_CLS_GROUP_ACCESS_g'
H5_f.c:(.text+0x61a): undefined reference to `H5open'
H5_f.c:(.text+0x620): undefined reference to `H5P_CLS_DATATYPE_CREATE_g'
H5_f.c:(.text+0x629): undefined reference to `H5open'
H5_f.c:(.text+0x62f): undefined reference to `H5P_CLS_DATATYPE_ACCESS_g'
H5_f.c:(.text+0x638): undefined reference to `H5open'
H5_f.c:(.text+0x63e): undefined reference to `H5P_CLS_STRING_CREATE_g'
H5_f.c:(.text+0x647): undefined reference to `H5open'
H5_f.c:(.text+0x64d): undefined reference to `H5P_CLS_ATTRIBUTE_CREATE_g'
H5_f.c:(.text+0x656): undefined reference to `H5open'
H5_f.c:(.text+0x65c): undefined reference to `H5P_CLS_OBJECT_COPY_g'
H5_f.c:(.text+0x665): undefined reference to `H5open'
H5_f.c:(.text+0x66b): undefined reference to `H5P_CLS_LINK_CREATE_g'
H5_f.c:(.text+0x674): undefined reference to `H5open'
H5_f.c:(.text+0x689): undefined reference to `H5P_CLS_LINK_ACCESS_g'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5init_types_c_':
H5_f.c:(.text+0x9f1): undefined reference to `H5open'
H5_f.c:(.text+0x9f7): undefined reference to `H5T_NATIVE_INT_g'
H5_f.c:(.text+0x9fc): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa0c): undefined reference to `H5open'
H5_f.c:(.text+0xa12): undefined reference to `H5T_NATIVE_FLOAT_g'
H5_f.c:(.text+0xa17): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa27): undefined reference to `H5open'
H5_f.c:(.text+0xa2d): undefined reference to `H5T_NATIVE_DOUBLE_g'
H5_f.c:(.text+0xa32): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa42): undefined reference to `H5open'
H5_f.c:(.text+0xa48): undefined reference to `H5T_FORTRAN_S1_g'
H5_f.c:(.text+0xa4d): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa63): undefined reference to `H5Tset_size'
H5_f.c:(.text+0xa77): undefined reference to `H5Tset_strpad'
H5_f.c:(.text+0xa87): undefined reference to `H5open'
H5_f.c:(.text+0xa8d): undefined reference to `H5T_STD_REF_OBJ_g'
H5_f.c:(.text+0xa92): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xaa2): undefined reference to `H5open'
H5_f.c:(.text+0xaa8): undefined reference to `H5T_STD_REF_DSETREG_g'
H5_f.c:(.text+0xaad): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xabd): undefined reference to `H5open'
H5_f.c:(.text+0xac3): undefined reference to `H5T_NATIVE_SCHAR_g'
H5_f.c:(.text+0xac8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xad8): undefined reference to `H5open'
H5_f.c:(.text+0xade): undefined reference to `H5T_NATIVE_SHORT_g'
H5_f.c:(.text+0xae3): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xaf3): undefined reference to `H5open'
H5_f.c:(.text+0xaf9): undefined reference to `H5T_NATIVE_INT_g'
H5_f.c:(.text+0xafe): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb0e): undefined reference to `H5open'
H5_f.c:(.text+0xb14): undefined reference to `H5T_NATIVE_LLONG_g'
H5_f.c:(.text+0xb19): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb29): undefined reference to `H5open'
H5_f.c:(.text+0xb2f): undefined reference to `H5T_NATIVE_FLOAT_g'
H5_f.c:(.text+0xb34): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb44): undefined reference to `H5open'
H5_f.c:(.text+0xb4a): undefined reference to `H5T_NATIVE_DOUBLE_g'
H5_f.c:(.text+0xb4f): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb5f): undefined reference to `H5open'
H5_f.c:(.text+0xb65): undefined reference to `H5T_NATIVE_LDOUBLE_g'
H5_f.c:(.text+0xb6a): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb7a): undefined reference to `H5open'
H5_f.c:(.text+0xb80): undefined reference to `H5T_IEEE_F32BE_g'
H5_f.c:(.text+0xb85): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb96): undefined reference to `H5open'
H5_f.c:(.text+0xb9c): undefined reference to `H5T_IEEE_F32LE_g'
H5_f.c:(.text+0xba1): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbb3): undefined reference to `H5open'
H5_f.c:(.text+0xbb9): undefined reference to `H5T_IEEE_F64BE_g'
H5_f.c:(.text+0xbbe): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbd0): undefined reference to `H5open'
H5_f.c:(.text+0xbd6): undefined reference to `H5T_IEEE_F64LE_g'
H5_f.c:(.text+0xbdb): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbed): undefined reference to `H5open'
H5_f.c:(.text+0xbf3): undefined reference to `H5T_STD_I8BE_g'
H5_f.c:(.text+0xbf8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc09): undefined reference to `H5open'
H5_f.c:(.text+0xc0f): undefined reference to `H5T_STD_I8LE_g'
H5_f.c:(.text+0xc14): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc25): undefined reference to `H5open'
H5_f.c:(.text+0xc2b): undefined reference to `H5T_STD_I16BE_g'
H5_f.c:(.text+0xc30): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc41): undefined reference to `H5open'
H5_f.c:(.text+0xc47): undefined reference to `H5T_STD_I16LE_g'
H5_f.c:(.text+0xc4c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc5d): undefined reference to `H5open'
H5_f.c:(.text+0xc63): undefined reference to `H5T_STD_I32BE_g'
H5_f.c:(.text+0xc68): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc79): undefined reference to `H5open'
H5_f.c:(.text+0xc7f): undefined reference to `H5T_STD_I32LE_g'
H5_f.c:(.text+0xc84): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc95): undefined reference to `H5open'
H5_f.c:(.text+0xc9b): undefined reference to `H5T_STD_I64BE_g'
H5_f.c:(.text+0xca0): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xcb1): undefined reference to `H5open'
H5_f.c:(.text+0xcb7): undefined reference to `H5T_STD_I64LE_g'
H5_f.c:(.text+0xcbc): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xccd): undefined reference to `H5open'
H5_f.c:(.text+0xcd3): undefined reference to `H5T_STD_U8BE_g'
H5_f.c:(.text+0xcd8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xce9): undefined reference to `H5open'
H5_f.c:(.text+0xcef): undefined reference to `H5T_STD_U8LE_g'
H5_f.c:(.text+0xcf4): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd05): undefined reference to `H5open'
H5_f.c:(.text+0xd0b): undefined reference to `H5T_STD_U16BE_g'
H5_f.c:(.text+0xd10): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd21): undefined reference to `H5open'
H5_f.c:(.text+0xd27): undefined reference to `H5T_STD_U16LE_g'
H5_f.c:(.text+0xd2c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd3d): undefined reference to `H5open'
H5_f.c:(.text+0xd43): undefined reference to `H5T_STD_U32BE_g'
H5_f.c:(.text+0xd48): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd59): undefined reference to `H5open'
H5_f.c:(.text+0xd5f): undefined reference to `H5T_STD_U32LE_g'
H5_f.c:(.text+0xd64): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd71): undefined reference to `H5open'
H5_f.c:(.text+0xd77): undefined reference to `H5T_STD_U64BE_g'
H5_f.c:(.text+0xd7c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd89): undefined reference to `H5open'
H5_f.c:(.text+0xd8f): undefined reference to `H5T_STD_U64LE_g'
H5_f.c:(.text+0xd94): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xda1): undefined reference to `H5open'
H5_f.c:(.text+0xda7): undefined reference to `H5T_C_S1_g'
H5_f.c:(.text+0xdac): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xdc3): undefined reference to `H5Tset_size'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dcreate_c_':
H5Df.c:(.text+0x5c): undefined reference to `H5Dcreate2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dopen_c_':
H5Df.c:(.text+0xc9): undefined reference to `H5Dopen2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_c_':
H5Df.c:(.text+0xfd): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_s_c_':
H5Df.c:(.text+0x12d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_1_c_':
H5Df.c:(.text+0x15d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_2_c_':
H5Df.c:(.text+0x18d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_3_c_':
H5Df.c:(.text+0x1bd): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o):H5Df.c:(.text+0x1ed): more undefined references to `H5Dwrite' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_c_':
H5Df.c:(.text+0x8dd): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_s_c_':
H5Df.c:(.text+0x90d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_1_c_':
H5Df.c:(.text+0x93d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_2_c_':
H5Df.c:(.text+0x96d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_3_c_':
H5Df.c:(.text+0x99d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o):H5Df.c:(.text+0x9cd): more undefined references to `H5Dread' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dclose_c_':
H5Df.c:(.text+0x10b4): undefined reference to `H5Dclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_space_c_':
H5Df.c:(.text+0x10d7): undefined reference to `H5Dget_space'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_type_c_':
H5Df.c:(.text+0x10f7): undefined reference to `H5Dget_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_create_plist_c_':
H5Df.c:(.text+0x1117): undefined reference to `H5Dget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dset_extent_c_':
H5Df.c:(.text+0x114a): undefined reference to `H5Dget_space'
H5Df.c:(.text+0x115e): undefined reference to `H5Sget_simple_extent_ndims'
H5Df.c:(.text+0x1169): undefined reference to `H5Sclose'
H5Df.c:(.text+0x11ec): undefined reference to `H5Dset_extent'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_storage_size_c_':
H5Df.c:(.text+0x1237): undefined reference to `H5Dget_storage_size'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dvlen_get_max_len_c_':
H5Df.c:(.text+0x1270): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x12a1): undefined reference to `H5Dread'
H5Df.c:(.text+0x12d8): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_integer_c_':
H5Df.c:(.text+0x1535): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_integer_c_':
H5Df.c:(.text+0x15bb): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x1611): undefined reference to `H5Dread'
H5Df.c:(.text+0x1678): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_string_c_':
H5Df.c:(.text+0x1792): undefined reference to `H5Dwrite'
H5Df.c:(.text+0x17b0): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_string_c_':
H5Df.c:(.text+0x1862): undefined reference to `H5Dread'
H5Df.c:(.text+0x1965): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_real_c_':
H5Df.c:(.text+0x1c55): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_real_c_':
H5Df.c:(.text+0x1cdb): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x1d31): undefined reference to `H5Dread'
H5Df.c:(.text+0x1d98): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfillc_c_':
H5Df.c:(.text+0x1dd0): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_c_':
H5Df.c:(.text+0x1e00): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_integer_c_':
H5Df.c:(.text+0x1e30): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_real_c_':
H5Df.c:(.text+0x1e60): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_double_c_':
H5Df.c:(.text+0x1e90): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_space_status_c_':
H5Df.c:(.text+0x1ebf): undefined reference to `H5Dget_space_status'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dcreate_anon_c_':
H5Df.c:(.text+0x1ef1): undefined reference to `H5Dcreate_anon'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_access_plist_c_':
H5Df.c:(.text+0x1f17): undefined reference to `H5Dget_access_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fcreate_c_':
H5Ff.c:(.text+0x30): undefined reference to `H5Fcreate'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fflush_c_':
H5Ff.c:(.text+0x66): undefined reference to `H5Fflush'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fmount_c_':
H5Ff.c:(.text+0xb1): undefined reference to `H5Fmount'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5funmount_c_':
H5Ff.c:(.text+0x115): undefined reference to `H5Funmount'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fopen_c_':
H5Ff.c:(.text+0x178): undefined reference to `H5Fopen'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5freopen_c_':
H5Ff.c:(.text+0x1b7): undefined reference to `H5Freopen'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_create_plist_c_':
H5Ff.c:(.text+0x1d7): undefined reference to `H5Fget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_access_plist_c_':
H5Ff.c:(.text+0x1f7): undefined reference to `H5Fget_access_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fis_hdf5_c_':
H5Ff.c:(.text+0x22c): undefined reference to `H5Fis_hdf5'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fclose_c_':
H5Ff.c:(.text+0x264): undefined reference to `H5Fclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_obj_count_c_':
H5Ff.c:(.text+0x28a): undefined reference to `H5Fget_obj_count'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_obj_ids_c_':
H5Ff.c:(.text+0x2ec): undefined reference to `H5Fget_obj_ids'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_freespace_c_':
H5Ff.c:(.text+0x427): undefined reference to `H5Fget_freespace'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_name_c_':
H5Ff.c:(.text+0x486): undefined reference to `H5Fget_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_filesize_c_':
H5Ff.c:(.text+0x4df): undefined reference to `H5Fget_filesize'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gcreate_c_':
H5Gf.c:(.text+0x3f): undefined reference to `H5open'
H5Gf.c:(.text+0x45): undefined reference to `H5P_CLS_GROUP_CREATE_g'
H5Gf.c:(.text+0x4a): undefined reference to `H5Pcreate'
H5Gf.c:(.text+0x5e): undefined reference to `H5Pset_local_heap_size_hint'
H5Gf.c:(.text+0x76): undefined reference to `H5Gcreate2'
H5Gf.c:(.text+0x8e): undefined reference to `H5Pclose'
H5Gf.c:(.text+0xcb): undefined reference to `H5Gcreate2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gopen_c_':
H5Gf.c:(.text+0x119): undefined reference to `H5Gopen2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_obj_info_idx_c_':
H5Gf.c:(.text+0x1aa): undefined reference to `H5Gopen2'
H5Gf.c:(.text+0x1ca): undefined reference to `H5Lget_name_by_idx'
H5Gf.c:(.text+0x1f2): undefined reference to `H5Oget_info_by_idx'
H5Gf.c:(.text+0x225): undefined reference to `H5Gclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gn_members_c_':
H5Gf.c:(.text+0x29b): undefined reference to `H5Gget_info_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gclose_c_':
H5Gf.c:(.text+0x2d4): undefined reference to `H5Gclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5glink_c_':
H5Gf.c:(.text+0x34b): undefined reference to `H5Lcreate_hard'
H5Gf.c:(.text+0x369): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5glink2_c_':
H5Gf.c:(.text+0x405): undefined reference to `H5Lcreate_hard'
H5Gf.c:(.text+0x422): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gunlink_c_':
H5Gf.c:(.text+0x48e): undefined reference to `H5Ldelete'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gmove_c_':
H5Gf.c:(.text+0x513): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gmove2_c_':
H5Gf.c:(.text+0x5a8): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_linkval_c_':
H5Gf.c:(.text+0x662): undefined reference to `H5Lget_val'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gset_comment_c_':
H5Gf.c:(.text+0x6ed): undefined reference to `H5Oset_comment_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_comment_c_':
H5Gf.c:(.text+0x78c): undefined reference to `H5Oget_comment_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gcreate_anon_c_':
H5Gf.c:(.text+0x7dc): undefined reference to `H5Gcreate_anon'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_create_plist_c_':
H5Gf.c:(.text+0x807): undefined reference to `H5Gget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_c_':
H5Gf.c:(.text+0x843): undefined reference to `H5Gget_info'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_by_idx_c_':
H5Gf.c:(.text+0x8fe): undefined reference to `H5Gget_info_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_by_name_c_':
H5Gf.c:(.text+0x9c6): undefined reference to `H5Gget_info_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcopy_c_':
H5Lf.c:(.text+0x66): undefined reference to `H5Lcopy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_external_c_':
H5Lf.c:(.text+0x12a): undefined reference to `H5Lcreate_external'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5ldelete_c_':
H5Lf.c:(.text+0x1a0): undefined reference to `H5Ldelete'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_soft_c_':
H5Lf.c:(.text+0x22c): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_hard_c_':
H5Lf.c:(.text+0x2d6): undefined reference to `H5Lcreate_hard'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5ldelete_by_idx_c_':
H5Lf.c:(.text+0x35a): undefined reference to `H5Ldelete_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lexists_c_':
H5Lf.c:(.text+0x3c7): undefined reference to `H5Lexists'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_info_c_':
H5Lf.c:(.text+0x447): undefined reference to `H5Lget_info'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_info_by_idx_c_':
H5Lf.c:(.text+0x511): undefined reference to `H5Lget_info_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lis_registered_c_':
H5Lf.c:(.text+0x5a4): undefined reference to `H5Lis_registered'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lmove_c_':
H5Lf.c:(.text+0x616): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_name_by_idx_c_':
H5Lf.c:(.text+0x6df): undefined reference to `H5Lget_name_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_val_c_':
H5Lf.c:(.text+0x773): undefined reference to `H5Lget_val'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5screate_simple_c_':
H5Sf.c:(.text+0xde): undefined reference to `H5Screate_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sclose_c_':
H5Sf.c:(.text+0x114): undefined reference to `H5Sclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5screate_c_':
H5Sf.c:(.text+0x137): undefined reference to `H5Screate'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5scopy_c_':
H5Sf.c:(.text+0x157): undefined reference to `H5Scopy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_hyper_nblocks_c_':
H5Sf.c:(.text+0x177): undefined reference to `H5Sget_select_hyper_nblocks'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_elem_npoints_c_':
H5Sf.c:(.text+0x197): undefined reference to `H5Sget_select_elem_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_hyper_blocklist_c_':
H5Sf.c:(.text+0x1cc): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x211): undefined reference to `H5Sget_select_hyper_blocklist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_bounds_c_':
H5Sf.c:(.text+0x400): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x427): undefined reference to `H5Sget_select_bounds'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_elem_pointlist_c_':
H5Sf.c:(.text+0x68b): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x6cb): undefined reference to `H5Sget_select_elem_pointlist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_all_c_':
H5Sf.c:(.text+0x744): undefined reference to `H5Sselect_all'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_none_c_':
H5Sf.c:(.text+0x764): undefined reference to `H5Sselect_none'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_valid_c_':
H5Sf.c:(.text+0x787): undefined reference to `H5Sselect_valid'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_npoints_c_':
H5Sf.c:(.text+0x7a7): undefined reference to `H5Sget_simple_extent_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_npoints_c_':
H5Sf.c:(.text+0x7c7): undefined reference to `H5Sget_select_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_ndims_c_':
H5Sf.c:(.text+0x7e7): undefined reference to `H5Sget_simple_extent_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_type_c_':
H5Sf.c:(.text+0x807): undefined reference to `H5Sget_simple_extent_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5soffset_simple_c_':
H5Sf.c:(.text+0x835): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x8b3): undefined reference to `H5Soffset_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sset_extent_simple_c_':
H5Sf.c:(.text+0x9c8): undefined reference to `H5Sset_extent_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_dims_c_':
H5Sf.c:(.text+0xa0b): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xa32): undefined reference to `H5Sget_simple_extent_dims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sis_simple_c_':
H5Sf.c:(.text+0xb97): undefined reference to `H5Sis_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sextent_copy_c_':
H5Sf.c:(.text+0xbb6): undefined reference to `H5Sextent_copy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sset_extent_none_c_':
H5Sf.c:(.text+0xbd4): undefined reference to `H5Sset_extent_none'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_hyperslab_c_':
H5Sf.c:(.text+0xc17): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xd5f): undefined reference to `H5Sselect_hyperslab'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_type_c_':
H5Sf.c:(.text+0xda7): undefined reference to `H5Sget_select_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_elements_c_':
H5Sf.c:(.text+0xddf): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xf39): undefined reference to `H5Sselect_elements'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sdecode_c_':
H5Sf.c:(.text+0xf85): undefined reference to `H5Sdecode'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sencode_c_':
H5Sf.c:(.text+0xfc5): undefined reference to `H5Sencode'
H5Sf.c:(.text+0x100c): undefined reference to `H5Sencode'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sextent_equal_c_':
H5Sf.c:(.text+0x1049): undefined reference to `H5Sextent_equal'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_c_':
H5LTfc.c:(.text+0x148): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int1_c_':
H5LTfc.c:(.text+0x308): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int2_c_':
H5LTfc.c:(.text+0x4c8): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int3_c_':
H5LTfc.c:(.text+0x688): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_fl1_c_':
H5LTfc.c:(.text+0x848): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o):H5LTfc.c:(.text+0xa08): more undefined references to `H5LTmake_dataset' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_c_':
H5LTfc.c:(.text+0x2183): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int1_c_':
H5LTfc.c:(.text+0x21f3): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int2_c_':
H5LTfc.c:(.text+0x2263): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int3_c_':
H5LTfc.c:(.text+0x22d3): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_fl1_c_':
H5LTfc.c:(.text+0x2343): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o):H5LTfc.c:(.text+0x23b3): more undefined references to `H5LTread_dataset' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_string_c_':
H5LTfc.c:(.text+0x29ee): undefined reference to `H5LTmake_dataset_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_string_c_':
H5LTfc.c:(.text+0x2a5f): undefined reference to `H5LTread_dataset_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_int_c_':
H5LTfc.c:(.text+0x2b04): undefined reference to `H5LTset_attribute_int'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_float_c_':
H5LTfc.c:(.text+0x2bb4): undefined reference to `H5LTset_attribute_float'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_double_c_':
H5LTfc.c:(.text+0x2c64): undefined reference to `H5LTset_attribute_double'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_string_c_':
H5LTfc.c:(.text+0x2d2a): undefined reference to `H5LTset_attribute_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_int_c_':
H5LTfc.c:(.text+0x2def): undefined reference to `H5LTget_attribute_int'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_float_c_':
H5LTfc.c:(.text+0x2e8f): undefined reference to `H5LTget_attribute_float'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_double_c_':
H5LTfc.c:(.text+0x2f2f): undefined reference to `H5LTget_attribute_double'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_string_c_':
H5LTfc.c:(.text+0x2fcf): undefined reference to `H5LTget_attribute_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_dataset_ndims_c_':
H5LTfc.c:(.text+0x3041): undefined reference to `H5LTget_dataset_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltfind_dataset_c_':
H5LTfc.c:(.text+0x30a0): undefined reference to `H5LTfind_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_dataset_info_c_':
H5LTfc.c:(.text+0x3121): undefined reference to `H5LTget_dataset_info'
H5LTfc.c:(.text+0x3151): undefined reference to `H5LTget_dataset_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_ndims_c_':
H5LTfc.c:(.text+0x3303): undefined reference to `H5LTget_attribute_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_info_c_':
H5LTfc.c:(.text+0x33c7): undefined reference to `H5LTget_attribute_info'
H5LTfc.c:(.text+0x340c): undefined reference to `H5LTget_attribute_ndims'
make[2]: *** [Rayleigh2D] Error 1
make[1]: *** [CMakeFiles/Rayleigh2D.dir/all] Error 2
make: *** [all] Error 2
_______________________________________________
Hdf-forum is for HDF software users discussion. Hdf-forum@hdfgroup.org http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
Please make sure that you have HDF5 libraries in the following order
hdf5hl_fortran (if you are really using it!) hdf5_fortran hdf5_hl hdf5 <compression libraries if any>
Elena
···
On Feb 23, 2011, at 2:37 AM, Paul Anton Letnes wrote:
On 23. feb. 2011, at 04.12, Allen D Byrne wrote:
Paul,
Looking at your CMakeLists.txt file - does moving the following:
add_library(Rayleigh2D_Module
Rayleigh2D_Modules/Rayleigh2D_Module.f90
Rayleigh2D_Modules/Rayleigh2D_Utils.f90
Rayleigh2D_Modules/SFL_Error_Handling.f90
Rayleigh2D_Modules/SFL_Fourier.f90
Rayleigh2D_Modules/SFL_ISO_Fortran_Env.f90
Rayleigh2D_Modules/SFL_Logical_Units.f90
Rayleigh2D_Modules/constants.f90
Rayleigh2D_Modules/derived_type_module.f90
Rayleigh2D_Modules/surface_correlated_module.f90
Rayleigh2D_Modules/surface_util_module.f90
Rayleigh2D_Modules/zbcg2_module.f90
Rayleigh2D_Modules/BiCGstab_module.f90
Rayleigh2D_Modules/R_save.f90
Rayleigh2D_Modules/version.f90
)
above the following help?
##################################################
# Library linking is handled below
##################################################
# Common libraries for all compilers
target_link_libraries (Rayleigh2D Rayleigh2D_Module FFT_Modules fftw3 hdf5 hdf5_hl hdf5_fortran hdf5hl_fortran z)
I think the target: Rayleigh2D_Module needs to be defined before use.
Allen
Hi, this did nothing. My compilation error remains the same. It is attached below. Also, I should note that before we started using HDF5 (simply dumping the results to an ASCII file), these errors did not appear.
But thanks for the suggestion.
Cheers,
Paul.
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5close_types_c_':
H5_f.c:(.text+0x34): undefined reference to `H5Tclose'
H5_f.c:(.text+0x78): undefined reference to `H5Tclose'
H5_f.c:(.text+0xa8): undefined reference to `H5Tclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5open_c_':
H5_f.c:(.text+0x102): undefined reference to `H5open'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5close_c_':
H5_f.c:(.text+0x122): undefined reference to `H5close'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5get_libversion_c_':
H5_f.c:(.text+0x162): undefined reference to `H5get_libversion'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5check_version_c_':
H5_f.c:(.text+0x1a8): undefined reference to `H5check_version'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5garbage_collect_c_':
H5_f.c:(.text+0x1b2): undefined reference to `H5garbage_collect'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5dont_atexit_c_':
H5_f.c:(.text+0x1d2): undefined reference to `H5dont_atexit'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5init_flags_c_':
H5_f.c:(.text+0x2c0): undefined reference to `H5check_version'
H5_f.c:(.text+0x2db): undefined reference to `H5check_version'
H5_f.c:(.text+0x2f7): undefined reference to `H5check_version'
H5_f.c:(.text+0x313): undefined reference to `H5check_version'
H5_f.c:(.text+0x32f): undefined reference to `H5check_version'
H5_f.c:(.text+0x427): undefined reference to `H5FD_core_init'
H5_f.c:(.text+0x42f): undefined reference to `H5FD_family_init'
H5_f.c:(.text+0x438): undefined reference to `H5FD_log_init'
H5_f.c:(.text+0x441): undefined reference to `H5FD_mpio_init'
H5_f.c:(.text+0x44a): undefined reference to `H5FD_multi_init'
H5_f.c:(.text+0x453): undefined reference to `H5FD_sec2_init'
H5_f.c:(.text+0x45c): undefined reference to `H5FD_stdio_init'
H5_f.c:(.text+0x578): undefined reference to `H5open'
H5_f.c:(.text+0x583): undefined reference to `H5P_CLS_FILE_CREATE_g'
H5_f.c:(.text+0x58b): undefined reference to `H5open'
H5_f.c:(.text+0x591): undefined reference to `H5P_CLS_FILE_ACCESS_g'
H5_f.c:(.text+0x59a): undefined reference to `H5open'
H5_f.c:(.text+0x5a0): undefined reference to `H5P_CLS_DATASET_CREATE_g'
H5_f.c:(.text+0x5a9): undefined reference to `H5open'
H5_f.c:(.text+0x5af): undefined reference to `H5P_CLS_DATASET_XFER_g'
H5_f.c:(.text+0x5b8): undefined reference to `H5open'
H5_f.c:(.text+0x5be): undefined reference to `H5P_CLS_FILE_MOUNT_g'
H5_f.c:(.text+0x5cf): undefined reference to `H5open'
H5_f.c:(.text+0x5d5): undefined reference to `H5P_CLS_ROOT_g'
H5_f.c:(.text+0x5de): undefined reference to `H5open'
H5_f.c:(.text+0x5e4): undefined reference to `H5P_CLS_OBJECT_CREATE_g'
H5_f.c:(.text+0x5ed): undefined reference to `H5open'
H5_f.c:(.text+0x5f3): undefined reference to `H5P_CLS_DATASET_ACCESS_g'
H5_f.c:(.text+0x5fc): undefined reference to `H5open'
H5_f.c:(.text+0x602): undefined reference to `H5P_CLS_GROUP_CREATE_g'
H5_f.c:(.text+0x60b): undefined reference to `H5open'
H5_f.c:(.text+0x611): undefined reference to `H5P_CLS_GROUP_ACCESS_g'
H5_f.c:(.text+0x61a): undefined reference to `H5open'
H5_f.c:(.text+0x620): undefined reference to `H5P_CLS_DATATYPE_CREATE_g'
H5_f.c:(.text+0x629): undefined reference to `H5open'
H5_f.c:(.text+0x62f): undefined reference to `H5P_CLS_DATATYPE_ACCESS_g'
H5_f.c:(.text+0x638): undefined reference to `H5open'
H5_f.c:(.text+0x63e): undefined reference to `H5P_CLS_STRING_CREATE_g'
H5_f.c:(.text+0x647): undefined reference to `H5open'
H5_f.c:(.text+0x64d): undefined reference to `H5P_CLS_ATTRIBUTE_CREATE_g'
H5_f.c:(.text+0x656): undefined reference to `H5open'
H5_f.c:(.text+0x65c): undefined reference to `H5P_CLS_OBJECT_COPY_g'
H5_f.c:(.text+0x665): undefined reference to `H5open'
H5_f.c:(.text+0x66b): undefined reference to `H5P_CLS_LINK_CREATE_g'
H5_f.c:(.text+0x674): undefined reference to `H5open'
H5_f.c:(.text+0x689): undefined reference to `H5P_CLS_LINK_ACCESS_g'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5init_types_c_':
H5_f.c:(.text+0x9f1): undefined reference to `H5open'
H5_f.c:(.text+0x9f7): undefined reference to `H5T_NATIVE_INT_g'
H5_f.c:(.text+0x9fc): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa0c): undefined reference to `H5open'
H5_f.c:(.text+0xa12): undefined reference to `H5T_NATIVE_FLOAT_g'
H5_f.c:(.text+0xa17): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa27): undefined reference to `H5open'
H5_f.c:(.text+0xa2d): undefined reference to `H5T_NATIVE_DOUBLE_g'
H5_f.c:(.text+0xa32): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa42): undefined reference to `H5open'
H5_f.c:(.text+0xa48): undefined reference to `H5T_FORTRAN_S1_g'
H5_f.c:(.text+0xa4d): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa63): undefined reference to `H5Tset_size'
H5_f.c:(.text+0xa77): undefined reference to `H5Tset_strpad'
H5_f.c:(.text+0xa87): undefined reference to `H5open'
H5_f.c:(.text+0xa8d): undefined reference to `H5T_STD_REF_OBJ_g'
H5_f.c:(.text+0xa92): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xaa2): undefined reference to `H5open'
H5_f.c:(.text+0xaa8): undefined reference to `H5T_STD_REF_DSETREG_g'
H5_f.c:(.text+0xaad): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xabd): undefined reference to `H5open'
H5_f.c:(.text+0xac3): undefined reference to `H5T_NATIVE_SCHAR_g'
H5_f.c:(.text+0xac8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xad8): undefined reference to `H5open'
H5_f.c:(.text+0xade): undefined reference to `H5T_NATIVE_SHORT_g'
H5_f.c:(.text+0xae3): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xaf3): undefined reference to `H5open'
H5_f.c:(.text+0xaf9): undefined reference to `H5T_NATIVE_INT_g'
H5_f.c:(.text+0xafe): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb0e): undefined reference to `H5open'
H5_f.c:(.text+0xb14): undefined reference to `H5T_NATIVE_LLONG_g'
H5_f.c:(.text+0xb19): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb29): undefined reference to `H5open'
H5_f.c:(.text+0xb2f): undefined reference to `H5T_NATIVE_FLOAT_g'
H5_f.c:(.text+0xb34): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb44): undefined reference to `H5open'
H5_f.c:(.text+0xb4a): undefined reference to `H5T_NATIVE_DOUBLE_g'
H5_f.c:(.text+0xb4f): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb5f): undefined reference to `H5open'
H5_f.c:(.text+0xb65): undefined reference to `H5T_NATIVE_LDOUBLE_g'
H5_f.c:(.text+0xb6a): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb7a): undefined reference to `H5open'
H5_f.c:(.text+0xb80): undefined reference to `H5T_IEEE_F32BE_g'
H5_f.c:(.text+0xb85): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb96): undefined reference to `H5open'
H5_f.c:(.text+0xb9c): undefined reference to `H5T_IEEE_F32LE_g'
H5_f.c:(.text+0xba1): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbb3): undefined reference to `H5open'
H5_f.c:(.text+0xbb9): undefined reference to `H5T_IEEE_F64BE_g'
H5_f.c:(.text+0xbbe): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbd0): undefined reference to `H5open'
H5_f.c:(.text+0xbd6): undefined reference to `H5T_IEEE_F64LE_g'
H5_f.c:(.text+0xbdb): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbed): undefined reference to `H5open'
H5_f.c:(.text+0xbf3): undefined reference to `H5T_STD_I8BE_g'
H5_f.c:(.text+0xbf8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc09): undefined reference to `H5open'
H5_f.c:(.text+0xc0f): undefined reference to `H5T_STD_I8LE_g'
H5_f.c:(.text+0xc14): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc25): undefined reference to `H5open'
H5_f.c:(.text+0xc2b): undefined reference to `H5T_STD_I16BE_g'
H5_f.c:(.text+0xc30): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc41): undefined reference to `H5open'
H5_f.c:(.text+0xc47): undefined reference to `H5T_STD_I16LE_g'
H5_f.c:(.text+0xc4c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc5d): undefined reference to `H5open'
H5_f.c:(.text+0xc63): undefined reference to `H5T_STD_I32BE_g'
H5_f.c:(.text+0xc68): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc79): undefined reference to `H5open'
H5_f.c:(.text+0xc7f): undefined reference to `H5T_STD_I32LE_g'
H5_f.c:(.text+0xc84): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc95): undefined reference to `H5open'
H5_f.c:(.text+0xc9b): undefined reference to `H5T_STD_I64BE_g'
H5_f.c:(.text+0xca0): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xcb1): undefined reference to `H5open'
H5_f.c:(.text+0xcb7): undefined reference to `H5T_STD_I64LE_g'
H5_f.c:(.text+0xcbc): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xccd): undefined reference to `H5open'
H5_f.c:(.text+0xcd3): undefined reference to `H5T_STD_U8BE_g'
H5_f.c:(.text+0xcd8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xce9): undefined reference to `H5open'
H5_f.c:(.text+0xcef): undefined reference to `H5T_STD_U8LE_g'
H5_f.c:(.text+0xcf4): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd05): undefined reference to `H5open'
H5_f.c:(.text+0xd0b): undefined reference to `H5T_STD_U16BE_g'
H5_f.c:(.text+0xd10): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd21): undefined reference to `H5open'
H5_f.c:(.text+0xd27): undefined reference to `H5T_STD_U16LE_g'
H5_f.c:(.text+0xd2c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd3d): undefined reference to `H5open'
H5_f.c:(.text+0xd43): undefined reference to `H5T_STD_U32BE_g'
H5_f.c:(.text+0xd48): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd59): undefined reference to `H5open'
H5_f.c:(.text+0xd5f): undefined reference to `H5T_STD_U32LE_g'
H5_f.c:(.text+0xd64): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd71): undefined reference to `H5open'
H5_f.c:(.text+0xd77): undefined reference to `H5T_STD_U64BE_g'
H5_f.c:(.text+0xd7c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd89): undefined reference to `H5open'
H5_f.c:(.text+0xd8f): undefined reference to `H5T_STD_U64LE_g'
H5_f.c:(.text+0xd94): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xda1): undefined reference to `H5open'
H5_f.c:(.text+0xda7): undefined reference to `H5T_C_S1_g'
H5_f.c:(.text+0xdac): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xdc3): undefined reference to `H5Tset_size'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dcreate_c_':
H5Df.c:(.text+0x5c): undefined reference to `H5Dcreate2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dopen_c_':
H5Df.c:(.text+0xc9): undefined reference to `H5Dopen2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_c_':
H5Df.c:(.text+0xfd): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_s_c_':
H5Df.c:(.text+0x12d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_1_c_':
H5Df.c:(.text+0x15d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_2_c_':
H5Df.c:(.text+0x18d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_3_c_':
H5Df.c:(.text+0x1bd): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o):H5Df.c:(.text+0x1ed): more undefined references to `H5Dwrite' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_c_':
H5Df.c:(.text+0x8dd): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_s_c_':
H5Df.c:(.text+0x90d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_1_c_':
H5Df.c:(.text+0x93d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_2_c_':
H5Df.c:(.text+0x96d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_3_c_':
H5Df.c:(.text+0x99d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o):H5Df.c:(.text+0x9cd): more undefined references to `H5Dread' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dclose_c_':
H5Df.c:(.text+0x10b4): undefined reference to `H5Dclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_space_c_':
H5Df.c:(.text+0x10d7): undefined reference to `H5Dget_space'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_type_c_':
H5Df.c:(.text+0x10f7): undefined reference to `H5Dget_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_create_plist_c_':
H5Df.c:(.text+0x1117): undefined reference to `H5Dget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dset_extent_c_':
H5Df.c:(.text+0x114a): undefined reference to `H5Dget_space'
H5Df.c:(.text+0x115e): undefined reference to `H5Sget_simple_extent_ndims'
H5Df.c:(.text+0x1169): undefined reference to `H5Sclose'
H5Df.c:(.text+0x11ec): undefined reference to `H5Dset_extent'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_storage_size_c_':
H5Df.c:(.text+0x1237): undefined reference to `H5Dget_storage_size'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dvlen_get_max_len_c_':
H5Df.c:(.text+0x1270): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x12a1): undefined reference to `H5Dread'
H5Df.c:(.text+0x12d8): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_integer_c_':
H5Df.c:(.text+0x1535): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_integer_c_':
H5Df.c:(.text+0x15bb): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x1611): undefined reference to `H5Dread'
H5Df.c:(.text+0x1678): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_string_c_':
H5Df.c:(.text+0x1792): undefined reference to `H5Dwrite'
H5Df.c:(.text+0x17b0): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_string_c_':
H5Df.c:(.text+0x1862): undefined reference to `H5Dread'
H5Df.c:(.text+0x1965): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_real_c_':
H5Df.c:(.text+0x1c55): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_real_c_':
H5Df.c:(.text+0x1cdb): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x1d31): undefined reference to `H5Dread'
H5Df.c:(.text+0x1d98): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfillc_c_':
H5Df.c:(.text+0x1dd0): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_c_':
H5Df.c:(.text+0x1e00): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_integer_c_':
H5Df.c:(.text+0x1e30): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_real_c_':
H5Df.c:(.text+0x1e60): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_double_c_':
H5Df.c:(.text+0x1e90): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_space_status_c_':
H5Df.c:(.text+0x1ebf): undefined reference to `H5Dget_space_status'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dcreate_anon_c_':
H5Df.c:(.text+0x1ef1): undefined reference to `H5Dcreate_anon'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_access_plist_c_':
H5Df.c:(.text+0x1f17): undefined reference to `H5Dget_access_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fcreate_c_':
H5Ff.c:(.text+0x30): undefined reference to `H5Fcreate'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fflush_c_':
H5Ff.c:(.text+0x66): undefined reference to `H5Fflush'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fmount_c_':
H5Ff.c:(.text+0xb1): undefined reference to `H5Fmount'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5funmount_c_':
H5Ff.c:(.text+0x115): undefined reference to `H5Funmount'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fopen_c_':
H5Ff.c:(.text+0x178): undefined reference to `H5Fopen'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5freopen_c_':
H5Ff.c:(.text+0x1b7): undefined reference to `H5Freopen'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_create_plist_c_':
H5Ff.c:(.text+0x1d7): undefined reference to `H5Fget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_access_plist_c_':
H5Ff.c:(.text+0x1f7): undefined reference to `H5Fget_access_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fis_hdf5_c_':
H5Ff.c:(.text+0x22c): undefined reference to `H5Fis_hdf5'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fclose_c_':
H5Ff.c:(.text+0x264): undefined reference to `H5Fclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_obj_count_c_':
H5Ff.c:(.text+0x28a): undefined reference to `H5Fget_obj_count'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_obj_ids_c_':
H5Ff.c:(.text+0x2ec): undefined reference to `H5Fget_obj_ids'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_freespace_c_':
H5Ff.c:(.text+0x427): undefined reference to `H5Fget_freespace'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_name_c_':
H5Ff.c:(.text+0x486): undefined reference to `H5Fget_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_filesize_c_':
H5Ff.c:(.text+0x4df): undefined reference to `H5Fget_filesize'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gcreate_c_':
H5Gf.c:(.text+0x3f): undefined reference to `H5open'
H5Gf.c:(.text+0x45): undefined reference to `H5P_CLS_GROUP_CREATE_g'
H5Gf.c:(.text+0x4a): undefined reference to `H5Pcreate'
H5Gf.c:(.text+0x5e): undefined reference to `H5Pset_local_heap_size_hint'
H5Gf.c:(.text+0x76): undefined reference to `H5Gcreate2'
H5Gf.c:(.text+0x8e): undefined reference to `H5Pclose'
H5Gf.c:(.text+0xcb): undefined reference to `H5Gcreate2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gopen_c_':
H5Gf.c:(.text+0x119): undefined reference to `H5Gopen2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_obj_info_idx_c_':
H5Gf.c:(.text+0x1aa): undefined reference to `H5Gopen2'
H5Gf.c:(.text+0x1ca): undefined reference to `H5Lget_name_by_idx'
H5Gf.c:(.text+0x1f2): undefined reference to `H5Oget_info_by_idx'
H5Gf.c:(.text+0x225): undefined reference to `H5Gclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gn_members_c_':
H5Gf.c:(.text+0x29b): undefined reference to `H5Gget_info_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gclose_c_':
H5Gf.c:(.text+0x2d4): undefined reference to `H5Gclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5glink_c_':
H5Gf.c:(.text+0x34b): undefined reference to `H5Lcreate_hard'
H5Gf.c:(.text+0x369): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5glink2_c_':
H5Gf.c:(.text+0x405): undefined reference to `H5Lcreate_hard'
H5Gf.c:(.text+0x422): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gunlink_c_':
H5Gf.c:(.text+0x48e): undefined reference to `H5Ldelete'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gmove_c_':
H5Gf.c:(.text+0x513): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gmove2_c_':
H5Gf.c:(.text+0x5a8): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_linkval_c_':
H5Gf.c:(.text+0x662): undefined reference to `H5Lget_val'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gset_comment_c_':
H5Gf.c:(.text+0x6ed): undefined reference to `H5Oset_comment_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_comment_c_':
H5Gf.c:(.text+0x78c): undefined reference to `H5Oget_comment_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gcreate_anon_c_':
H5Gf.c:(.text+0x7dc): undefined reference to `H5Gcreate_anon'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_create_plist_c_':
H5Gf.c:(.text+0x807): undefined reference to `H5Gget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_c_':
H5Gf.c:(.text+0x843): undefined reference to `H5Gget_info'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_by_idx_c_':
H5Gf.c:(.text+0x8fe): undefined reference to `H5Gget_info_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_by_name_c_':
H5Gf.c:(.text+0x9c6): undefined reference to `H5Gget_info_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcopy_c_':
H5Lf.c:(.text+0x66): undefined reference to `H5Lcopy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_external_c_':
H5Lf.c:(.text+0x12a): undefined reference to `H5Lcreate_external'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5ldelete_c_':
H5Lf.c:(.text+0x1a0): undefined reference to `H5Ldelete'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_soft_c_':
H5Lf.c:(.text+0x22c): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_hard_c_':
H5Lf.c:(.text+0x2d6): undefined reference to `H5Lcreate_hard'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5ldelete_by_idx_c_':
H5Lf.c:(.text+0x35a): undefined reference to `H5Ldelete_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lexists_c_':
H5Lf.c:(.text+0x3c7): undefined reference to `H5Lexists'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_info_c_':
H5Lf.c:(.text+0x447): undefined reference to `H5Lget_info'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_info_by_idx_c_':
H5Lf.c:(.text+0x511): undefined reference to `H5Lget_info_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lis_registered_c_':
H5Lf.c:(.text+0x5a4): undefined reference to `H5Lis_registered'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lmove_c_':
H5Lf.c:(.text+0x616): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_name_by_idx_c_':
H5Lf.c:(.text+0x6df): undefined reference to `H5Lget_name_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_val_c_':
H5Lf.c:(.text+0x773): undefined reference to `H5Lget_val'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5screate_simple_c_':
H5Sf.c:(.text+0xde): undefined reference to `H5Screate_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sclose_c_':
H5Sf.c:(.text+0x114): undefined reference to `H5Sclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5screate_c_':
H5Sf.c:(.text+0x137): undefined reference to `H5Screate'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5scopy_c_':
H5Sf.c:(.text+0x157): undefined reference to `H5Scopy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_hyper_nblocks_c_':
H5Sf.c:(.text+0x177): undefined reference to `H5Sget_select_hyper_nblocks'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_elem_npoints_c_':
H5Sf.c:(.text+0x197): undefined reference to `H5Sget_select_elem_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_hyper_blocklist_c_':
H5Sf.c:(.text+0x1cc): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x211): undefined reference to `H5Sget_select_hyper_blocklist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_bounds_c_':
H5Sf.c:(.text+0x400): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x427): undefined reference to `H5Sget_select_bounds'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_elem_pointlist_c_':
H5Sf.c:(.text+0x68b): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x6cb): undefined reference to `H5Sget_select_elem_pointlist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_all_c_':
H5Sf.c:(.text+0x744): undefined reference to `H5Sselect_all'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_none_c_':
H5Sf.c:(.text+0x764): undefined reference to `H5Sselect_none'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_valid_c_':
H5Sf.c:(.text+0x787): undefined reference to `H5Sselect_valid'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_npoints_c_':
H5Sf.c:(.text+0x7a7): undefined reference to `H5Sget_simple_extent_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_npoints_c_':
H5Sf.c:(.text+0x7c7): undefined reference to `H5Sget_select_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_ndims_c_':
H5Sf.c:(.text+0x7e7): undefined reference to `H5Sget_simple_extent_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_type_c_':
H5Sf.c:(.text+0x807): undefined reference to `H5Sget_simple_extent_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5soffset_simple_c_':
H5Sf.c:(.text+0x835): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x8b3): undefined reference to `H5Soffset_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sset_extent_simple_c_':
H5Sf.c:(.text+0x9c8): undefined reference to `H5Sset_extent_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_dims_c_':
H5Sf.c:(.text+0xa0b): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xa32): undefined reference to `H5Sget_simple_extent_dims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sis_simple_c_':
H5Sf.c:(.text+0xb97): undefined reference to `H5Sis_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sextent_copy_c_':
H5Sf.c:(.text+0xbb6): undefined reference to `H5Sextent_copy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sset_extent_none_c_':
H5Sf.c:(.text+0xbd4): undefined reference to `H5Sset_extent_none'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_hyperslab_c_':
H5Sf.c:(.text+0xc17): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xd5f): undefined reference to `H5Sselect_hyperslab'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_type_c_':
H5Sf.c:(.text+0xda7): undefined reference to `H5Sget_select_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_elements_c_':
H5Sf.c:(.text+0xddf): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xf39): undefined reference to `H5Sselect_elements'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sdecode_c_':
H5Sf.c:(.text+0xf85): undefined reference to `H5Sdecode'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sencode_c_':
H5Sf.c:(.text+0xfc5): undefined reference to `H5Sencode'
H5Sf.c:(.text+0x100c): undefined reference to `H5Sencode'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sextent_equal_c_':
H5Sf.c:(.text+0x1049): undefined reference to `H5Sextent_equal'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_c_':
H5LTfc.c:(.text+0x148): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int1_c_':
H5LTfc.c:(.text+0x308): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int2_c_':
H5LTfc.c:(.text+0x4c8): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int3_c_':
H5LTfc.c:(.text+0x688): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_fl1_c_':
H5LTfc.c:(.text+0x848): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o):H5LTfc.c:(.text+0xa08): more undefined references to `H5LTmake_dataset' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_c_':
H5LTfc.c:(.text+0x2183): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int1_c_':
H5LTfc.c:(.text+0x21f3): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int2_c_':
H5LTfc.c:(.text+0x2263): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int3_c_':
H5LTfc.c:(.text+0x22d3): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_fl1_c_':
H5LTfc.c:(.text+0x2343): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o):H5LTfc.c:(.text+0x23b3): more undefined references to `H5LTread_dataset' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_string_c_':
H5LTfc.c:(.text+0x29ee): undefined reference to `H5LTmake_dataset_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_string_c_':
H5LTfc.c:(.text+0x2a5f): undefined reference to `H5LTread_dataset_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_int_c_':
H5LTfc.c:(.text+0x2b04): undefined reference to `H5LTset_attribute_int'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_float_c_':
H5LTfc.c:(.text+0x2bb4): undefined reference to `H5LTset_attribute_float'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_double_c_':
H5LTfc.c:(.text+0x2c64): undefined reference to `H5LTset_attribute_double'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_string_c_':
H5LTfc.c:(.text+0x2d2a): undefined reference to `H5LTset_attribute_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_int_c_':
H5LTfc.c:(.text+0x2def): undefined reference to `H5LTget_attribute_int'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_float_c_':
H5LTfc.c:(.text+0x2e8f): undefined reference to `H5LTget_attribute_float'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_double_c_':
H5LTfc.c:(.text+0x2f2f): undefined reference to `H5LTget_attribute_double'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_string_c_':
H5LTfc.c:(.text+0x2fcf): undefined reference to `H5LTget_attribute_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_dataset_ndims_c_':
H5LTfc.c:(.text+0x3041): undefined reference to `H5LTget_dataset_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltfind_dataset_c_':
H5LTfc.c:(.text+0x30a0): undefined reference to `H5LTfind_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_dataset_info_c_':
H5LTfc.c:(.text+0x3121): undefined reference to `H5LTget_dataset_info'
H5LTfc.c:(.text+0x3151): undefined reference to `H5LTget_dataset_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_ndims_c_':
H5LTfc.c:(.text+0x3303): undefined reference to `H5LTget_attribute_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_info_c_':
H5LTfc.c:(.text+0x33c7): undefined reference to `H5LTget_attribute_info'
H5LTfc.c:(.text+0x340c): undefined reference to `H5LTget_attribute_ndims'
make[2]: *** [Rayleigh2D] Error 1
make[1]: *** [CMakeFiles/Rayleigh2D.dir/all] Error 2
make: *** [all] Error 2
_______________________________________________
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I am really using fortran, it is the language my code is written in. I did not realize that the ordering of the libraries mattered.
Paul.
···
On 23. feb. 2011, at 18.57, Elena Pourmal wrote:
Please make sure that you have HDF5 libraries in the following order
hdf5hl_fortran (if you are really using it!) hdf5_fortran hdf5_hl hdf5 <compression libraries if any>
Elena
On Feb 23, 2011, at 2:37 AM, Paul Anton Letnes wrote:
On 23. feb. 2011, at 04.12, Allen D Byrne wrote:
Paul,
Looking at your CMakeLists.txt file - does moving the following:
add_library(Rayleigh2D_Module
Rayleigh2D_Modules/Rayleigh2D_Module.f90
Rayleigh2D_Modules/Rayleigh2D_Utils.f90
Rayleigh2D_Modules/SFL_Error_Handling.f90
Rayleigh2D_Modules/SFL_Fourier.f90
Rayleigh2D_Modules/SFL_ISO_Fortran_Env.f90
Rayleigh2D_Modules/SFL_Logical_Units.f90
Rayleigh2D_Modules/constants.f90
Rayleigh2D_Modules/derived_type_module.f90
Rayleigh2D_Modules/surface_correlated_module.f90
Rayleigh2D_Modules/surface_util_module.f90
Rayleigh2D_Modules/zbcg2_module.f90
Rayleigh2D_Modules/BiCGstab_module.f90
Rayleigh2D_Modules/R_save.f90
Rayleigh2D_Modules/version.f90
)
above the following help?
##################################################
# Library linking is handled below
##################################################
# Common libraries for all compilers
target_link_libraries (Rayleigh2D Rayleigh2D_Module FFT_Modules fftw3 hdf5 hdf5_hl hdf5_fortran hdf5hl_fortran z)
I think the target: Rayleigh2D_Module needs to be defined before use.
Allen
Hi, this did nothing. My compilation error remains the same. It is attached below. Also, I should note that before we started using HDF5 (simply dumping the results to an ASCII file), these errors did not appear.
But thanks for the suggestion.
Cheers,
Paul.
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5close_types_c_':
H5_f.c:(.text+0x34): undefined reference to `H5Tclose'
H5_f.c:(.text+0x78): undefined reference to `H5Tclose'
H5_f.c:(.text+0xa8): undefined reference to `H5Tclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5open_c_':
H5_f.c:(.text+0x102): undefined reference to `H5open'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5close_c_':
H5_f.c:(.text+0x122): undefined reference to `H5close'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5get_libversion_c_':
H5_f.c:(.text+0x162): undefined reference to `H5get_libversion'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5check_version_c_':
H5_f.c:(.text+0x1a8): undefined reference to `H5check_version'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5garbage_collect_c_':
H5_f.c:(.text+0x1b2): undefined reference to `H5garbage_collect'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5dont_atexit_c_':
H5_f.c:(.text+0x1d2): undefined reference to `H5dont_atexit'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5init_flags_c_':
H5_f.c:(.text+0x2c0): undefined reference to `H5check_version'
H5_f.c:(.text+0x2db): undefined reference to `H5check_version'
H5_f.c:(.text+0x2f7): undefined reference to `H5check_version'
H5_f.c:(.text+0x313): undefined reference to `H5check_version'
H5_f.c:(.text+0x32f): undefined reference to `H5check_version'
H5_f.c:(.text+0x427): undefined reference to `H5FD_core_init'
H5_f.c:(.text+0x42f): undefined reference to `H5FD_family_init'
H5_f.c:(.text+0x438): undefined reference to `H5FD_log_init'
H5_f.c:(.text+0x441): undefined reference to `H5FD_mpio_init'
H5_f.c:(.text+0x44a): undefined reference to `H5FD_multi_init'
H5_f.c:(.text+0x453): undefined reference to `H5FD_sec2_init'
H5_f.c:(.text+0x45c): undefined reference to `H5FD_stdio_init'
H5_f.c:(.text+0x578): undefined reference to `H5open'
H5_f.c:(.text+0x583): undefined reference to `H5P_CLS_FILE_CREATE_g'
H5_f.c:(.text+0x58b): undefined reference to `H5open'
H5_f.c:(.text+0x591): undefined reference to `H5P_CLS_FILE_ACCESS_g'
H5_f.c:(.text+0x59a): undefined reference to `H5open'
H5_f.c:(.text+0x5a0): undefined reference to `H5P_CLS_DATASET_CREATE_g'
H5_f.c:(.text+0x5a9): undefined reference to `H5open'
H5_f.c:(.text+0x5af): undefined reference to `H5P_CLS_DATASET_XFER_g'
H5_f.c:(.text+0x5b8): undefined reference to `H5open'
H5_f.c:(.text+0x5be): undefined reference to `H5P_CLS_FILE_MOUNT_g'
H5_f.c:(.text+0x5cf): undefined reference to `H5open'
H5_f.c:(.text+0x5d5): undefined reference to `H5P_CLS_ROOT_g'
H5_f.c:(.text+0x5de): undefined reference to `H5open'
H5_f.c:(.text+0x5e4): undefined reference to `H5P_CLS_OBJECT_CREATE_g'
H5_f.c:(.text+0x5ed): undefined reference to `H5open'
H5_f.c:(.text+0x5f3): undefined reference to `H5P_CLS_DATASET_ACCESS_g'
H5_f.c:(.text+0x5fc): undefined reference to `H5open'
H5_f.c:(.text+0x602): undefined reference to `H5P_CLS_GROUP_CREATE_g'
H5_f.c:(.text+0x60b): undefined reference to `H5open'
H5_f.c:(.text+0x611): undefined reference to `H5P_CLS_GROUP_ACCESS_g'
H5_f.c:(.text+0x61a): undefined reference to `H5open'
H5_f.c:(.text+0x620): undefined reference to `H5P_CLS_DATATYPE_CREATE_g'
H5_f.c:(.text+0x629): undefined reference to `H5open'
H5_f.c:(.text+0x62f): undefined reference to `H5P_CLS_DATATYPE_ACCESS_g'
H5_f.c:(.text+0x638): undefined reference to `H5open'
H5_f.c:(.text+0x63e): undefined reference to `H5P_CLS_STRING_CREATE_g'
H5_f.c:(.text+0x647): undefined reference to `H5open'
H5_f.c:(.text+0x64d): undefined reference to `H5P_CLS_ATTRIBUTE_CREATE_g'
H5_f.c:(.text+0x656): undefined reference to `H5open'
H5_f.c:(.text+0x65c): undefined reference to `H5P_CLS_OBJECT_COPY_g'
H5_f.c:(.text+0x665): undefined reference to `H5open'
H5_f.c:(.text+0x66b): undefined reference to `H5P_CLS_LINK_CREATE_g'
H5_f.c:(.text+0x674): undefined reference to `H5open'
H5_f.c:(.text+0x689): undefined reference to `H5P_CLS_LINK_ACCESS_g'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5_f.o): In function `h5init_types_c_':
H5_f.c:(.text+0x9f1): undefined reference to `H5open'
H5_f.c:(.text+0x9f7): undefined reference to `H5T_NATIVE_INT_g'
H5_f.c:(.text+0x9fc): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa0c): undefined reference to `H5open'
H5_f.c:(.text+0xa12): undefined reference to `H5T_NATIVE_FLOAT_g'
H5_f.c:(.text+0xa17): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa27): undefined reference to `H5open'
H5_f.c:(.text+0xa2d): undefined reference to `H5T_NATIVE_DOUBLE_g'
H5_f.c:(.text+0xa32): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa42): undefined reference to `H5open'
H5_f.c:(.text+0xa48): undefined reference to `H5T_FORTRAN_S1_g'
H5_f.c:(.text+0xa4d): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xa63): undefined reference to `H5Tset_size'
H5_f.c:(.text+0xa77): undefined reference to `H5Tset_strpad'
H5_f.c:(.text+0xa87): undefined reference to `H5open'
H5_f.c:(.text+0xa8d): undefined reference to `H5T_STD_REF_OBJ_g'
H5_f.c:(.text+0xa92): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xaa2): undefined reference to `H5open'
H5_f.c:(.text+0xaa8): undefined reference to `H5T_STD_REF_DSETREG_g'
H5_f.c:(.text+0xaad): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xabd): undefined reference to `H5open'
H5_f.c:(.text+0xac3): undefined reference to `H5T_NATIVE_SCHAR_g'
H5_f.c:(.text+0xac8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xad8): undefined reference to `H5open'
H5_f.c:(.text+0xade): undefined reference to `H5T_NATIVE_SHORT_g'
H5_f.c:(.text+0xae3): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xaf3): undefined reference to `H5open'
H5_f.c:(.text+0xaf9): undefined reference to `H5T_NATIVE_INT_g'
H5_f.c:(.text+0xafe): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb0e): undefined reference to `H5open'
H5_f.c:(.text+0xb14): undefined reference to `H5T_NATIVE_LLONG_g'
H5_f.c:(.text+0xb19): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb29): undefined reference to `H5open'
H5_f.c:(.text+0xb2f): undefined reference to `H5T_NATIVE_FLOAT_g'
H5_f.c:(.text+0xb34): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb44): undefined reference to `H5open'
H5_f.c:(.text+0xb4a): undefined reference to `H5T_NATIVE_DOUBLE_g'
H5_f.c:(.text+0xb4f): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb5f): undefined reference to `H5open'
H5_f.c:(.text+0xb65): undefined reference to `H5T_NATIVE_LDOUBLE_g'
H5_f.c:(.text+0xb6a): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb7a): undefined reference to `H5open'
H5_f.c:(.text+0xb80): undefined reference to `H5T_IEEE_F32BE_g'
H5_f.c:(.text+0xb85): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xb96): undefined reference to `H5open'
H5_f.c:(.text+0xb9c): undefined reference to `H5T_IEEE_F32LE_g'
H5_f.c:(.text+0xba1): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbb3): undefined reference to `H5open'
H5_f.c:(.text+0xbb9): undefined reference to `H5T_IEEE_F64BE_g'
H5_f.c:(.text+0xbbe): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbd0): undefined reference to `H5open'
H5_f.c:(.text+0xbd6): undefined reference to `H5T_IEEE_F64LE_g'
H5_f.c:(.text+0xbdb): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xbed): undefined reference to `H5open'
H5_f.c:(.text+0xbf3): undefined reference to `H5T_STD_I8BE_g'
H5_f.c:(.text+0xbf8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc09): undefined reference to `H5open'
H5_f.c:(.text+0xc0f): undefined reference to `H5T_STD_I8LE_g'
H5_f.c:(.text+0xc14): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc25): undefined reference to `H5open'
H5_f.c:(.text+0xc2b): undefined reference to `H5T_STD_I16BE_g'
H5_f.c:(.text+0xc30): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc41): undefined reference to `H5open'
H5_f.c:(.text+0xc47): undefined reference to `H5T_STD_I16LE_g'
H5_f.c:(.text+0xc4c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc5d): undefined reference to `H5open'
H5_f.c:(.text+0xc63): undefined reference to `H5T_STD_I32BE_g'
H5_f.c:(.text+0xc68): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc79): undefined reference to `H5open'
H5_f.c:(.text+0xc7f): undefined reference to `H5T_STD_I32LE_g'
H5_f.c:(.text+0xc84): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xc95): undefined reference to `H5open'
H5_f.c:(.text+0xc9b): undefined reference to `H5T_STD_I64BE_g'
H5_f.c:(.text+0xca0): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xcb1): undefined reference to `H5open'
H5_f.c:(.text+0xcb7): undefined reference to `H5T_STD_I64LE_g'
H5_f.c:(.text+0xcbc): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xccd): undefined reference to `H5open'
H5_f.c:(.text+0xcd3): undefined reference to `H5T_STD_U8BE_g'
H5_f.c:(.text+0xcd8): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xce9): undefined reference to `H5open'
H5_f.c:(.text+0xcef): undefined reference to `H5T_STD_U8LE_g'
H5_f.c:(.text+0xcf4): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd05): undefined reference to `H5open'
H5_f.c:(.text+0xd0b): undefined reference to `H5T_STD_U16BE_g'
H5_f.c:(.text+0xd10): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd21): undefined reference to `H5open'
H5_f.c:(.text+0xd27): undefined reference to `H5T_STD_U16LE_g'
H5_f.c:(.text+0xd2c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd3d): undefined reference to `H5open'
H5_f.c:(.text+0xd43): undefined reference to `H5T_STD_U32BE_g'
H5_f.c:(.text+0xd48): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd59): undefined reference to `H5open'
H5_f.c:(.text+0xd5f): undefined reference to `H5T_STD_U32LE_g'
H5_f.c:(.text+0xd64): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd71): undefined reference to `H5open'
H5_f.c:(.text+0xd77): undefined reference to `H5T_STD_U64BE_g'
H5_f.c:(.text+0xd7c): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xd89): undefined reference to `H5open'
H5_f.c:(.text+0xd8f): undefined reference to `H5T_STD_U64LE_g'
H5_f.c:(.text+0xd94): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xda1): undefined reference to `H5open'
H5_f.c:(.text+0xda7): undefined reference to `H5T_C_S1_g'
H5_f.c:(.text+0xdac): undefined reference to `H5Tcopy'
H5_f.c:(.text+0xdc3): undefined reference to `H5Tset_size'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dcreate_c_':
H5Df.c:(.text+0x5c): undefined reference to `H5Dcreate2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dopen_c_':
H5Df.c:(.text+0xc9): undefined reference to `H5Dopen2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_c_':
H5Df.c:(.text+0xfd): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_s_c_':
H5Df.c:(.text+0x12d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_1_c_':
H5Df.c:(.text+0x15d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_2_c_':
H5Df.c:(.text+0x18d): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwritec_3_c_':
H5Df.c:(.text+0x1bd): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o):H5Df.c:(.text+0x1ed): more undefined references to `H5Dwrite' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_c_':
H5Df.c:(.text+0x8dd): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_s_c_':
H5Df.c:(.text+0x90d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_1_c_':
H5Df.c:(.text+0x93d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_2_c_':
H5Df.c:(.text+0x96d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dreadc_3_c_':
H5Df.c:(.text+0x99d): undefined reference to `H5Dread'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o):H5Df.c:(.text+0x9cd): more undefined references to `H5Dread' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dclose_c_':
H5Df.c:(.text+0x10b4): undefined reference to `H5Dclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_space_c_':
H5Df.c:(.text+0x10d7): undefined reference to `H5Dget_space'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_type_c_':
H5Df.c:(.text+0x10f7): undefined reference to `H5Dget_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_create_plist_c_':
H5Df.c:(.text+0x1117): undefined reference to `H5Dget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dset_extent_c_':
H5Df.c:(.text+0x114a): undefined reference to `H5Dget_space'
H5Df.c:(.text+0x115e): undefined reference to `H5Sget_simple_extent_ndims'
H5Df.c:(.text+0x1169): undefined reference to `H5Sclose'
H5Df.c:(.text+0x11ec): undefined reference to `H5Dset_extent'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_storage_size_c_':
H5Df.c:(.text+0x1237): undefined reference to `H5Dget_storage_size'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dvlen_get_max_len_c_':
H5Df.c:(.text+0x1270): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x12a1): undefined reference to `H5Dread'
H5Df.c:(.text+0x12d8): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_integer_c_':
H5Df.c:(.text+0x1535): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_integer_c_':
H5Df.c:(.text+0x15bb): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x1611): undefined reference to `H5Dread'
H5Df.c:(.text+0x1678): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_string_c_':
H5Df.c:(.text+0x1792): undefined reference to `H5Dwrite'
H5Df.c:(.text+0x17b0): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_string_c_':
H5Df.c:(.text+0x1862): undefined reference to `H5Dread'
H5Df.c:(.text+0x1965): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dwrite_vl_real_c_':
H5Df.c:(.text+0x1c55): undefined reference to `H5Dwrite'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dread_vl_real_c_':
H5Df.c:(.text+0x1cdb): undefined reference to `H5Sget_select_npoints'
H5Df.c:(.text+0x1d31): undefined reference to `H5Dread'
H5Df.c:(.text+0x1d98): undefined reference to `H5Dvlen_reclaim'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfillc_c_':
H5Df.c:(.text+0x1dd0): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_c_':
H5Df.c:(.text+0x1e00): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_integer_c_':
H5Df.c:(.text+0x1e30): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_real_c_':
H5Df.c:(.text+0x1e60): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dfill_double_c_':
H5Df.c:(.text+0x1e90): undefined reference to `H5Dfill'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_space_status_c_':
H5Df.c:(.text+0x1ebf): undefined reference to `H5Dget_space_status'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dcreate_anon_c_':
H5Df.c:(.text+0x1ef1): undefined reference to `H5Dcreate_anon'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Df.o): In function `h5dget_access_plist_c_':
H5Df.c:(.text+0x1f17): undefined reference to `H5Dget_access_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fcreate_c_':
H5Ff.c:(.text+0x30): undefined reference to `H5Fcreate'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fflush_c_':
H5Ff.c:(.text+0x66): undefined reference to `H5Fflush'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fmount_c_':
H5Ff.c:(.text+0xb1): undefined reference to `H5Fmount'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5funmount_c_':
H5Ff.c:(.text+0x115): undefined reference to `H5Funmount'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fopen_c_':
H5Ff.c:(.text+0x178): undefined reference to `H5Fopen'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5freopen_c_':
H5Ff.c:(.text+0x1b7): undefined reference to `H5Freopen'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_create_plist_c_':
H5Ff.c:(.text+0x1d7): undefined reference to `H5Fget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_access_plist_c_':
H5Ff.c:(.text+0x1f7): undefined reference to `H5Fget_access_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fis_hdf5_c_':
H5Ff.c:(.text+0x22c): undefined reference to `H5Fis_hdf5'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fclose_c_':
H5Ff.c:(.text+0x264): undefined reference to `H5Fclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_obj_count_c_':
H5Ff.c:(.text+0x28a): undefined reference to `H5Fget_obj_count'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_obj_ids_c_':
H5Ff.c:(.text+0x2ec): undefined reference to `H5Fget_obj_ids'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_freespace_c_':
H5Ff.c:(.text+0x427): undefined reference to `H5Fget_freespace'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_name_c_':
H5Ff.c:(.text+0x486): undefined reference to `H5Fget_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Ff.o): In function `h5fget_filesize_c_':
H5Ff.c:(.text+0x4df): undefined reference to `H5Fget_filesize'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gcreate_c_':
H5Gf.c:(.text+0x3f): undefined reference to `H5open'
H5Gf.c:(.text+0x45): undefined reference to `H5P_CLS_GROUP_CREATE_g'
H5Gf.c:(.text+0x4a): undefined reference to `H5Pcreate'
H5Gf.c:(.text+0x5e): undefined reference to `H5Pset_local_heap_size_hint'
H5Gf.c:(.text+0x76): undefined reference to `H5Gcreate2'
H5Gf.c:(.text+0x8e): undefined reference to `H5Pclose'
H5Gf.c:(.text+0xcb): undefined reference to `H5Gcreate2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gopen_c_':
H5Gf.c:(.text+0x119): undefined reference to `H5Gopen2'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_obj_info_idx_c_':
H5Gf.c:(.text+0x1aa): undefined reference to `H5Gopen2'
H5Gf.c:(.text+0x1ca): undefined reference to `H5Lget_name_by_idx'
H5Gf.c:(.text+0x1f2): undefined reference to `H5Oget_info_by_idx'
H5Gf.c:(.text+0x225): undefined reference to `H5Gclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gn_members_c_':
H5Gf.c:(.text+0x29b): undefined reference to `H5Gget_info_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gclose_c_':
H5Gf.c:(.text+0x2d4): undefined reference to `H5Gclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5glink_c_':
H5Gf.c:(.text+0x34b): undefined reference to `H5Lcreate_hard'
H5Gf.c:(.text+0x369): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5glink2_c_':
H5Gf.c:(.text+0x405): undefined reference to `H5Lcreate_hard'
H5Gf.c:(.text+0x422): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gunlink_c_':
H5Gf.c:(.text+0x48e): undefined reference to `H5Ldelete'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gmove_c_':
H5Gf.c:(.text+0x513): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gmove2_c_':
H5Gf.c:(.text+0x5a8): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_linkval_c_':
H5Gf.c:(.text+0x662): undefined reference to `H5Lget_val'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gset_comment_c_':
H5Gf.c:(.text+0x6ed): undefined reference to `H5Oset_comment_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_comment_c_':
H5Gf.c:(.text+0x78c): undefined reference to `H5Oget_comment_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gcreate_anon_c_':
H5Gf.c:(.text+0x7dc): undefined reference to `H5Gcreate_anon'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_create_plist_c_':
H5Gf.c:(.text+0x807): undefined reference to `H5Gget_create_plist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_c_':
H5Gf.c:(.text+0x843): undefined reference to `H5Gget_info'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_by_idx_c_':
H5Gf.c:(.text+0x8fe): undefined reference to `H5Gget_info_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Gf.o): In function `h5gget_info_by_name_c_':
H5Gf.c:(.text+0x9c6): undefined reference to `H5Gget_info_by_name'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcopy_c_':
H5Lf.c:(.text+0x66): undefined reference to `H5Lcopy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_external_c_':
H5Lf.c:(.text+0x12a): undefined reference to `H5Lcreate_external'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5ldelete_c_':
H5Lf.c:(.text+0x1a0): undefined reference to `H5Ldelete'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_soft_c_':
H5Lf.c:(.text+0x22c): undefined reference to `H5Lcreate_soft'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lcreate_hard_c_':
H5Lf.c:(.text+0x2d6): undefined reference to `H5Lcreate_hard'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5ldelete_by_idx_c_':
H5Lf.c:(.text+0x35a): undefined reference to `H5Ldelete_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lexists_c_':
H5Lf.c:(.text+0x3c7): undefined reference to `H5Lexists'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_info_c_':
H5Lf.c:(.text+0x447): undefined reference to `H5Lget_info'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_info_by_idx_c_':
H5Lf.c:(.text+0x511): undefined reference to `H5Lget_info_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lis_registered_c_':
H5Lf.c:(.text+0x5a4): undefined reference to `H5Lis_registered'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lmove_c_':
H5Lf.c:(.text+0x616): undefined reference to `H5Lmove'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_name_by_idx_c_':
H5Lf.c:(.text+0x6df): undefined reference to `H5Lget_name_by_idx'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Lf.o): In function `h5lget_val_c_':
H5Lf.c:(.text+0x773): undefined reference to `H5Lget_val'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5screate_simple_c_':
H5Sf.c:(.text+0xde): undefined reference to `H5Screate_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sclose_c_':
H5Sf.c:(.text+0x114): undefined reference to `H5Sclose'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5screate_c_':
H5Sf.c:(.text+0x137): undefined reference to `H5Screate'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5scopy_c_':
H5Sf.c:(.text+0x157): undefined reference to `H5Scopy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_hyper_nblocks_c_':
H5Sf.c:(.text+0x177): undefined reference to `H5Sget_select_hyper_nblocks'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_elem_npoints_c_':
H5Sf.c:(.text+0x197): undefined reference to `H5Sget_select_elem_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_hyper_blocklist_c_':
H5Sf.c:(.text+0x1cc): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x211): undefined reference to `H5Sget_select_hyper_blocklist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_bounds_c_':
H5Sf.c:(.text+0x400): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x427): undefined reference to `H5Sget_select_bounds'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_elem_pointlist_c_':
H5Sf.c:(.text+0x68b): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x6cb): undefined reference to `H5Sget_select_elem_pointlist'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_all_c_':
H5Sf.c:(.text+0x744): undefined reference to `H5Sselect_all'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_none_c_':
H5Sf.c:(.text+0x764): undefined reference to `H5Sselect_none'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_valid_c_':
H5Sf.c:(.text+0x787): undefined reference to `H5Sselect_valid'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_npoints_c_':
H5Sf.c:(.text+0x7a7): undefined reference to `H5Sget_simple_extent_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_npoints_c_':
H5Sf.c:(.text+0x7c7): undefined reference to `H5Sget_select_npoints'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_ndims_c_':
H5Sf.c:(.text+0x7e7): undefined reference to `H5Sget_simple_extent_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_type_c_':
H5Sf.c:(.text+0x807): undefined reference to `H5Sget_simple_extent_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5soffset_simple_c_':
H5Sf.c:(.text+0x835): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0x8b3): undefined reference to `H5Soffset_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sset_extent_simple_c_':
H5Sf.c:(.text+0x9c8): undefined reference to `H5Sset_extent_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_simple_extent_dims_c_':
H5Sf.c:(.text+0xa0b): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xa32): undefined reference to `H5Sget_simple_extent_dims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sis_simple_c_':
H5Sf.c:(.text+0xb97): undefined reference to `H5Sis_simple'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sextent_copy_c_':
H5Sf.c:(.text+0xbb6): undefined reference to `H5Sextent_copy'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sset_extent_none_c_':
H5Sf.c:(.text+0xbd4): undefined reference to `H5Sset_extent_none'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_hyperslab_c_':
H5Sf.c:(.text+0xc17): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xd5f): undefined reference to `H5Sselect_hyperslab'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sget_select_type_c_':
H5Sf.c:(.text+0xda7): undefined reference to `H5Sget_select_type'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sselect_elements_c_':
H5Sf.c:(.text+0xddf): undefined reference to `H5Sget_simple_extent_ndims'
H5Sf.c:(.text+0xf39): undefined reference to `H5Sselect_elements'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sdecode_c_':
H5Sf.c:(.text+0xf85): undefined reference to `H5Sdecode'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sencode_c_':
H5Sf.c:(.text+0xfc5): undefined reference to `H5Sencode'
H5Sf.c:(.text+0x100c): undefined reference to `H5Sencode'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5_fortran.a(H5Sf.o): In function `h5sextent_equal_c_':
H5Sf.c:(.text+0x1049): undefined reference to `H5Sextent_equal'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_c_':
H5LTfc.c:(.text+0x148): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int1_c_':
H5LTfc.c:(.text+0x308): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int2_c_':
H5LTfc.c:(.text+0x4c8): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_int3_c_':
H5LTfc.c:(.text+0x688): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_fl1_c_':
H5LTfc.c:(.text+0x848): undefined reference to `H5LTmake_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o):H5LTfc.c:(.text+0xa08): more undefined references to `H5LTmake_dataset' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_c_':
H5LTfc.c:(.text+0x2183): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int1_c_':
H5LTfc.c:(.text+0x21f3): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int2_c_':
H5LTfc.c:(.text+0x2263): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_int3_c_':
H5LTfc.c:(.text+0x22d3): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_fl1_c_':
H5LTfc.c:(.text+0x2343): undefined reference to `H5LTread_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o):H5LTfc.c:(.text+0x23b3): more undefined references to `H5LTread_dataset' follow
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltmake_dataset_string_c_':
H5LTfc.c:(.text+0x29ee): undefined reference to `H5LTmake_dataset_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltread_dataset_string_c_':
H5LTfc.c:(.text+0x2a5f): undefined reference to `H5LTread_dataset_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_int_c_':
H5LTfc.c:(.text+0x2b04): undefined reference to `H5LTset_attribute_int'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_float_c_':
H5LTfc.c:(.text+0x2bb4): undefined reference to `H5LTset_attribute_float'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_double_c_':
H5LTfc.c:(.text+0x2c64): undefined reference to `H5LTset_attribute_double'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltset_attribute_string_c_':
H5LTfc.c:(.text+0x2d2a): undefined reference to `H5LTset_attribute_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_int_c_':
H5LTfc.c:(.text+0x2def): undefined reference to `H5LTget_attribute_int'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_float_c_':
H5LTfc.c:(.text+0x2e8f): undefined reference to `H5LTget_attribute_float'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_double_c_':
H5LTfc.c:(.text+0x2f2f): undefined reference to `H5LTget_attribute_double'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_string_c_':
H5LTfc.c:(.text+0x2fcf): undefined reference to `H5LTget_attribute_string'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_dataset_ndims_c_':
H5LTfc.c:(.text+0x3041): undefined reference to `H5LTget_dataset_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltfind_dataset_c_':
H5LTfc.c:(.text+0x30a0): undefined reference to `H5LTfind_dataset'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_dataset_info_c_':
H5LTfc.c:(.text+0x3121): undefined reference to `H5LTget_dataset_info'
H5LTfc.c:(.text+0x3151): undefined reference to `H5LTget_dataset_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_ndims_c_':
H5LTfc.c:(.text+0x3303): undefined reference to `H5LTget_attribute_ndims'
/share/apps/modulessoftware/hdf5/hdf-5.1.8.5-intel/lib/libhdf5hl_fortran.a(H5LTfc.o): In function `h5ltget_attribute_info_c_':
H5LTfc.c:(.text+0x33c7): undefined reference to `H5LTget_attribute_info'
H5LTfc.c:(.text+0x340c): undefined reference to `H5LTget_attribute_ndims'
make[2]: *** [Rayleigh2D] Error 1
make[1]: *** [CMakeFiles/Rayleigh2D.dir/all] Error 2
make: *** [all] Error 2
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