Hello,
I'm trying to compile hdf 1.8.8 on my CentOS 5 machine. I'm getting a lot of warnings and a final error when I try to compile hdf 1.8.8.
Configure command I've used is the following:
./configure --prefix=/share/apps/local/hdf5_1.8.8
I attach the suspicious log
configure:14906: result: no
configure:14910: checking for shl_load in -ldld
configure:14943: /share/apps/local/gcc/4.8.2/bin/gcc -o conftest conftest.c -ldld >&5
/usr/bin/ld: cannot find -ldld
collect2: error: ld returned 1 exit status
configure:14943: $? = 1
configure:15327: $? = 0
/share/apps/local/gcc/4.8.2/lib/: cannot read file data: Is a directory
Check make log attached.
Here are compiler specs:
gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/share/apps/local/gcc/4.8.2/libexec/gcc/x86_64-unknown-linux-gnu/4.8.2/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: ../configure --prefix=/share/apps/local/gcc/4.8.2 --with-mpfr=/share/apps/local/gcc/4.8.2 --with-gmp=/share/apps/local/gcc/4.8.2 --with-as=/share/apps/local/binutils/2.24/bin/as --enable-languages=c,c++,fortran
g++ -v
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/share/apps/local/gcc/4.8.2/libexec/gcc/x86_64-unknown-linux-gnu/4.8.2/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: ../configure --prefix=/share/apps/local/gcc/4.8.2 --with-mpfr=/share/apps/local/gcc/4.8.2 --with-gmp=/share/apps/local/gcc/4.8.2 --with-as=/share/apps/local/binutils/2.24/bin/as --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.8.2 (GCC)
Thank you very much.
Best regards,
Guillermo.
nohup.out (5.52 MB)
Hello Guillermo,
Can you try the latest release of HDF5, version 1.8.12? You can obtain it from this page:
http://www.hdfgroup.org/HDF5/release/obtainsrc.html
We see a problem in the output that you sent that was fixed a couple of releases ago.
We think it is the cause of the issue, and that using the latest release will solve this problem.
Let us know whether or not that helps.
Thanks!
-Barbara
help@hdfgroup.org
···
From: Hdf-forum [mailto:hdf-forum-bounces@lists.hdfgroup.org] On Behalf Of Guillermo Marco Puche
Sent: Friday, March 14, 2014 8:25 AM
To: hdf-forum@lists.hdfgroup.org
Subject: [Hdf-forum] Centos 5 gcc 4.8.2 error installing hdf 1.8.8
Hello,
I'm trying to compile hdf 1.8.8 on my CentOS 5 machine. I'm getting a lot of warnings and a final error when I try to compile hdf 1.8.8.
Configure command I've used is the following:
./configure --prefix=/share/apps/local/hdf5_1.8.8
I attach the suspicious log
configure:14906: result: no
configure:14910: checking for shl_load in -ldld
configure:14943: /share/apps/local/gcc/4.8.2/bin/gcc -o conftest conftest.c -ldld >&5
/usr/bin/ld: cannot find -ldld
collect2: error: ld returned 1 exit status
configure:14943: $? = 1
configure:15327: $? = 0
/share/apps/local/gcc/4.8.2/lib/: cannot read file data: Is a directory
Check make log attached.
Here are compiler specs:
gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/share/apps/local/gcc/4.8.2/libexec/gcc/x86_64-unknown-linux-gnu/4.8.2/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: ../configure --prefix=/share/apps/local/gcc/4.8.2 --with-mpfr=/share/apps/local/gcc/4.8.2 --with-gmp=/share/apps/local/gcc/4.8.2 --with-as=/share/apps/local/binutils/2.24/bin/as --enable-languages=c,c++,fortran
g++ -v
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/share/apps/local/gcc/4.8.2/libexec/gcc/x86_64-unknown-linux-gnu/4.8.2/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: ../configure --prefix=/share/apps/local/gcc/4.8.2 --with-mpfr=/share/apps/local/gcc/4.8.2 --with-gmp=/share/apps/local/gcc/4.8.2 --with-as=/share/apps/local/binutils/2.24/bin/as --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.8.2 (GCC)
Thank you very much.
Best regards,
Guillermo.
