build hdf5 with intel oneapi under linux redhat 8

HDF5 Library
1

Hello
I am trying to build hdf5 as detailed above.
this is what I do

CMake-hdf5-1.12.2]$ ctest -S HDF5config.cmake,MPI=false,BUILD_GENERATOR=Unix -C Release -V -O hdf5.log
– Dashboard script uname output: Linux-4.18.0-372.13.1.el8_6.x86_64-x86_64

– Dashboard script configuration:
CTEST_SITE=[fladsmodel]
CTEST_BUILD_NAME=[Linux-4.18.0-372.13.1.el8_6.x86_64-x86_64]
CTEST_SOURCE_DIRECTORY=[/home/jacob_be/hdf5/CMake-hdf5-1.12.2/hdf5-1.12.2]
CTEST_BINARY_DIRECTORY=[/home/jacob_be/hdf5/CMake-hdf5-1.12.2/build]
CTEST_CMAKE_GENERATOR=[Unix Makefiles]
CTEST_CONFIGURATION_TYPE=[Release]
CTEST_GIT_COMMAND=[]
CTEST_CHECKOUT_COMMAND=[]
CTEST_CONFIGURE_COMMAND=["/usr/bin/cmake" -C “/home/jacob_be/hdf5/CMake-hdf5-1.12.2/hdf5-1.12.2/config/cmake/cacheinit.cmake” -DCMAKE_BUILD_TYPE:STRING=Release -DBUILD_SHARED_LIBS:BOOL=ON -DHDF5_BUILD_FORTRAN:BOOL=ON -DHDF5_BUILD_JAVA:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/home/jacob_be/hdf5/CMake-hdf5-1.12.2/HDF_Group/HDF5/1.12.2 -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=/home/jacob_be/hdf5/CMake-hdf5-1.12.2 -DHDF5_ENABLE_PARALLEL:BOOL=ON -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_JAVA:BOOL=OFF -DHDF5_ENABLE_THREADSAFE:BOOL=OFF -DHDF5_PACKAGE_EXTLIBS:BOOL=ON -DSITE:STRING=fladsmodel -DBUILDNAME:STRING=Linux-4.18.0-372.13.1.el8_6.x86_64-x86_64 -DCTEST_USE_LAUNCHERS:BOOL=ON “-GUnix Makefiles” “” “-TIntel C++ Compiler 17.0” “/home/jacob_be/hdf5/CMake-hdf5-1.12.2/hdf5-1.12.2”]
CTEST_SCRIPT_DIRECTORY=[/home/jacob_be/hdf5/CMake-hdf5-1.12.2]
CTEST_USE_LAUNCHERS=[1]

Run dashboard with model Experimental
Source directory: /home/jacob_be/hdf5/CMake-hdf5-1.12.2/hdf5-1.12.2
Build directory: /home/jacob_be/hdf5/CMake-hdf5-1.12.2/build
Group: Experimental
Reading ctest configuration file: /home/jacob_be/hdf5/CMake-hdf5-1.12.2/hdf5-1.12.2/CTestConfig.cmake
Site: fladsmodel
Build name: Linux-4.18.0-372.13.1.el8_6.x86_64-x86_64
Use Experimental tag: 20220803-0710
Configure project
Each . represents 1024 bytes of output
. Size of output: 0K
Error(s) when configuring the project
Build project
Each symbol represents 1024 bytes of output.
. Size of output: 0K
Error(s) when building project
1 Compiler errors
0 Compiler warnings
Test project /home/jacob_be/hdf5/CMake-hdf5-1.12.2/build
No tests were found!!!

any help would really be appreciated
best
jac

2

Looking at the output, it is unclear to me where the error went. Do you have a CMakeErrors/CMakeError.log and/or CMakeOutput.log anywhere?

3

hi
thanks for your reply
this is the content of CMakeOuput.log

The system is: Linux - 4.18.0-372.13.1.el8_6.x86_64 - x86_64

I did not find a CMakeError.log
best
jac

4

Hi I a also found this
in the directory
hdf5/CMake-hdf5-1.12.2/build/Testing/20220803-0710/Build/error-0b1bc78bddb7363fcf786115ad283dc5.xml

/home/jacob_be/hdf5/CMake-hdf5-1.12.2/build /usr/bin/cmake --build . --config Release -- -j224 CMake Error: Generator Unix Makefiles does not support toolset specification, but toolset Intel C++ Compiler 17.0 was specified. 1
5

You are using our scripts, so did you make any changes to the HDF5confg.cmake script or the HDFOptions .cmake file?
The following probably should be labeled as windows only:
#set (CMAKE_GENERATOR_TOOLSET “Intel C++ Compiler 17.0”)

On our linux test machines we use the toolchain file in config/toolchain folder.

6

In the same HDFOptions.cmake file at the bottom is the option for setting the toolchain for intel.