# Parallel HDF5 make check errors (test cache) **URL:** \ **Category:** HDF5 Library\ **Created:** [June 20, 2019, 7:04pm UTC](https://forum.hdfgroup.org/t/parallel-hdf5-make-check-errors-test-cache/5883 "2019-06-20T19:04:05Z")\ **Posts on this page:** 3\ **Page:** 1
**Author:** ![chockittah](https://forum.hdfgroup.org/letter_avatar_proxy/v4/letter/c/76d3ee/32.png) [@chockittah](https://forum.hdfgroup.org/u/chockittah)\ **Post date:** [June 20, 2019, 7:04pm UTC](https://forum.hdfgroup.org/t/parallel-hdf5-make-check-errors-test-cache/5883/1 "2019-06-20T19:04:05Z")
System: x86\_64 GNU/Linux, Ubuntu 18.04. Compiling using mpich 2. > export CC=mpicc > ./configure --enable-parallel --enable-shared --prefix=/usr/local/hdf5 > make > make check I have checked and there are no versions of hdf5 in the environment (there is just hdf5-helper). **Things I have tried** : -using the latest version, 1.10.3, and 1.8.18 -using [gcc/g++ 7](https://www.open-mpi.org/faq/?category=mpi-apps#override-wrappers-after-v1.0) as the backend compiler for mpicc -no optimization O0 -compiling the serial version All yield the same error below. > # ============================ Testing cache > > # cache Test Log > > # ========================================= Internal cache tests express\_test = 1 > > Testing smoke check #1 – all clean, ins, dest, ren, 4/2 MB cache _FAILED_ > smoke\_check\_1(): failure\_mssg = “error in H5C\_insert().”. > Testing smoke check #2 – ~1/2 dirty, ins, dest, ren, 4/2 MB cache _FAILED_ > smoke\_check\_2(): failure\_mssg = “error in H5C\_insert().”. > Testing smoke check #3 – all clean, ins, dest, ren, 2/1 KB cache _FAILED_ > smoke\_check\_3(): failure\_mssg = “error in H5C\_protect().”. > Testing smoke check #4 – ~1/2 dirty, ins, dest, ren, 2/1 KB cache _FAILED_ > smoke\_check\_4(): failure\_mssg = “error in H5C\_protect().”. > Testing smoke check #5 – all clean, ins, prot, unprot, AR cache 1 PASSED > Testing smoke check #6 – ~1/2 dirty, ins, prot, unprot, AR cache 1 PASSED > Testing smoke check #7 – all clean, ins, prot, unprot, AR cache 2 PASSED > Testing smoke check #8 – ~1/2 dirty, ins, prot, unprot, AR cache 2 PASSED > Testing smoke check #9 – all clean, ins, dest, ren, 4/2 MB, corked _FAILED_ > smoke\_check\_9(): failure\_mssg = “error in H5C\_protect().”. > Testing smoke check #10 – ~1/2 dirty, ins, dest, ren, 4/2 MB, corked _FAILED_ > smoke\_check\_10(): failure\_mssg = “error in H5C\_insert().”. > Testing write permitted check – 1/0 MB cache _FAILED_ > write\_permitted\_check(): failure\_mssg = “error in H5C\_protect().”. > Testing H5C\_insert\_entry() functionality PASSED > Testing H5C\_flush\_cache() functionality _FAILED_ > check\_flush\_cache(): failure\_mssg = “flush with flags 0x0 failed in flush op test #6.”. > Testing H5C\_get\_entry\_status() functionality HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0: > #000: H5F.c line 444 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1531 in H5F\_open(): unable to truncate a file which is already open > major: File accessibilty > minor: Unable to open file > setup\_cache: H5Fcreate() failed. > _FAILED_ > check\_get\_entry\_status(): failure\_mssg = “file\_ptr NULL from setup\_cache.”. > Testing H5C\_expunge\_entry() functionality HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0: > #000: H5F.c line 444 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1531 in H5F\_open(): unable to truncate a file which is already open > major: File accessibilty > minor: Unable to open file > setup\_cache: H5Fcreate() failed. > _FAILED_ > check\_expunge\_entry(): failure\_mssg = “H5Fcreate() failed.”. > Testing multiple read only protects on a single entry HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0: > #000: H5F.c line 444 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1531 in H5F\_open(): unable to truncate a file which is already open > major: File accessibilty > minor: Unable to open file > setup\_cache: H5Fcreate() failed. > _FAILED_ > check\_multiple\_read\_protect: failure\_mssg = “H5Fcreate() failed.”. > Testing H5C\_move\_entry() functionality HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0: > #000: H5F.c line 444 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1531 in H5F\_open(): unable to truncate a file which is already open > major: File accessibilty > minor: Unable to open file > setup\_cache: H5Fcreate() failed. > _FAILED_ > check\_move\_entry(): failure\_mssg = “H5Fcreate() failed.”. > Testing H5C\_pin\_protected\_entry() functionality HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0: > #000: H5F.c line 444 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1531 in H5F\_open(): unable to truncate a file which is already open > major: File accessibilty > minor: Unable to open file > setup\_cache: H5Fcreate() failed. > _FAILED_ > check\_pin\_protected\_entry(): failure\_mssg = “file\_ptr NULL from setup\_cache.”. > Testing entry resize functionality HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0: > #000: H5F.c line 444 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1531 in H5F\_open(): unable to truncate a file which is already open > major: File accessibilty > minor: Unable to open file > setup\_cache: H5Fcreate() failed. > _FAILED_ > check\_resize\_entry(): failure\_mssg = “file\_ptr NULL from setup\_cache.”. > Testing evictions enabled/disabled functionality HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0: > #000: H5F.c line 444 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1531 in H5F\_open(): unable to truncate a file which is already open > major: File accessibilty > minor: Unable to open file > setup\_cache: H5Fcreate() failed. > _FAILED_ > check\_evictions\_enabled(): failure\_mssg = “file\_ptr NULL from setup\_cache.”. > Testing flush cache with protected entry error HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0: > #000: H5F.c line 444 in H5Fcreate(): unable to create file > major: File accessibilty > minor: Unable to open file > #001: H5Fint.c line 1531 in H5F\_open(): unable to truncate a file which is already open > major: File accessibilty > minor: Unable to open file > Command terminated by signal 11 > 15.28user 62.67system 3:33.57elapsed 36%CPU (0avgtext+0avgdata 256932maxresident)k > 0inputs+0outputs (0major+97924minor)pagefaults 0swaps > make[4]: \*\*\* [Makefile:3143: cache.chkexe\_] Error 1 > make[4]: Leaving directory ‘/home/sdtran/hdf5/hdf5-1.10.5/test’ > make[3]: \*\*\* [Makefile:3129: build-check-s] Error 2 > make[3]: Leaving directory ‘/home/sdtran/hdf5/hdf5-1.10.5/test’ > make[2]: \*\*\* [Makefile:3123: test] Error 2 > make[2]: Leaving directory ‘/home/sdtran/hdf5/hdf5-1.10.5/test’ > make[1]: \*\*\* [Makefile:2906: check-am] Error 2 > make[1]: Leaving directory ‘/home/sdtran/hdf5/hdf5-1.10.5/test’ > make: \*\*\* [Makefile:654: check-recursive] Error 1 ---
**Author:** ![chockittah](https://forum.hdfgroup.org/letter_avatar_proxy/v4/letter/c/76d3ee/32.png) [@chockittah](https://forum.hdfgroup.org/u/chockittah)\ **Post date:** [June 20, 2019, 7:22pm UTC](https://forum.hdfgroup.org/t/parallel-hdf5-make-check-errors-test-cache/5883/2 "2019-06-20T19:22:17Z")
config log [here](https://pastebin.com/JJLLpUrE) (pastebin link) ---
**Author:** ![chockittah](https://forum.hdfgroup.org/letter_avatar_proxy/v4/letter/c/76d3ee/32.png) [@chockittah](https://forum.hdfgroup.org/u/chockittah)\ **Post date:** [June 20, 2019, 7:58pm UTC](https://forum.hdfgroup.org/t/parallel-hdf5-make-check-errors-test-cache/5883/3 "2019-06-20T19:58:01Z")
For some reason, I built HDF5-1.6.7 from source, and it passed make check without errors. Unfortunately, with h5py, [1.8.4 or newer](http://docs.h5py.org/en/latest/build.html) is needed. Update: 1.8.4 passes test cache, but, like previous versions I’ve tested (e.g., 1.8.18), does not pass dt\_arith on my machine: > Testing soft unsigned long → long double conversions _FAILED_ > elmt 126: > src = ff ff ff ff ff ff ff ff 18446744073709551615 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff ff 18446744073709551615.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 127: > src = ff ff ff ff ff ff ff fe 18446744073709551614 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff fe 18446744073709551614.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 128: > src = ff ff ff ff ff ff ff fc 18446744073709551612 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff fc 18446744073709551612.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 129: > src = ff ff ff ff ff ff ff f8 18446744073709551608 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff f8 18446744073709551608.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 130: > src = ff ff ff ff ff ff ff f0 18446744073709551600 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff f0 18446744073709551600.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 131: > src = ff ff ff ff ff ff ff e0 18446744073709551584 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff e0 18446744073709551584.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 132: > src = ff ff ff ff ff ff ff c0 18446744073709551552 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff c0 18446744073709551552.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 133: > src = ff ff ff ff ff ff ff 80 18446744073709551488 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff 80 18446744073709551488.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 134: > src = ff ff ff ff ff ff ff 00 18446744073709551360 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff ff 00 18446744073709551360.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 135: > src = ff ff ff ff ff ff fe 00 18446744073709551104 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff fe 00 18446744073709551104.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > elmt 136: > src = ff ff ff ff ff ff fc 00 18446744073709550592 > dst = 00 00 00 00 00 00 40 3e ff ff ff ff ff ff fc 00 18446744073709550592.000000 > ans = 00 00 00 00 00 00 40 3f 80 00 00 00 00 00 00 00 18446744073709551616.000000 > \*\*\*\*\* 11 FAILURES! \*\*\*\*\* > Command exited with non-zero status 1 Which seems fine, according to this [thread](http://hdf-forum.184993.n3.nabble.com/IBM-Power8-dt-arith-error-td4029104.html). But it also does not pass t\_posix\_compliant : > Purpose: > This tests if the file system is posix compliant when POSIX and MPI IO APIs > are used. This is for information only and always exits with 0 even when > non-compliance errors are encounter. This is to prevent this test from > aborting the remaining parallel HDF5 tests unnecessarily. > Process 0: testfile=posix\_test > > Testing size 1024 > Testing allwrite\_allread\_blocks with MPI IO Process 1: testfile=posix\_test > Process 2: testfile=posix\_test > PASSED > Testing allwrite\_allread\_interlaced with MPI IO > Arrays do not match! Prcoess 0, element 1: [1, -1] > Arrays do not match! Prcoess 0, element 1: [2, -1] > Arrays do not match! Prcoess 0, element 1: [3, -1] > Arrays do not match! Prcoess 0, element 1: [4, -1] > Arrays do not match! Prcoess 0, element 1: [5, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 1, element 1: [1, -1] > Arrays do not match! Prcoess 1, element 1: [2, -1] > Arrays do not match! Prcoess 1, element 1: [3, -1] > Arrays do not match! Prcoess 1, element 1: [4, -1] > Arrays do not match! Prcoess 1, element 1: [5, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 2, element 1: [1, -1] > Arrays do not match! Prcoess 2, element 1: [2, -1] > Arrays do not match! Prcoess 2, element 1: [3, -1] > Arrays do not match! Prcoess 2, element 1: [4, -1] > Arrays do not match! Prcoess 2, element 1: [5, -1] > Printed 5 errors. Omitting the rest > Testing allwrite\_allread\_overlap with MPI IO PASSED > Testing onewrite\_allread\_blocks with MPI IO PASSED > Testing onewrite\_allread\_interlaced with MPI IO PASSED > Testing allwrite\_allread\_blocks with POSIX IO Arrays do not match! Prcoess 2, element 1: [1, 0] > Arrays do not match! Prcoess 2, element 2: [2, 0] > Arrays do not match! Prcoess 2, element 3: [3, 0] > Arrays do not match! Prcoess 2, element 4: [4, 0] > Arrays do not match! Prcoess 2, element 5: [5, 0] > Printed 5 errors. Omitting the rest > Testing onewrite\_allread\_blocks with POSIX IO PASSED > Testing onewrite\_allread\_interlaced with POSIX IO PASSED > > Testing size 4096 > Testing allwrite\_allread\_blocks with MPI IO PASSED > Testing allwrite\_allread\_interlaced with MPI IO PASSED > Testing allwrite\_allread\_overlap with MPI IO > Arrays do not match! Prcoess 0, element 1: [1, -1] > Arrays do not match! Prcoess 0, element 3: [3, -1] > Arrays do not match! Prcoess 0, element 5: [5, -1] > Arrays do not match! Prcoess 0, element 7: [7, -1] > Arrays do not match! Prcoess 0, element 9: [9, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 1, element 1: [1, -1] > Arrays do not match! Prcoess 1, element 3: [3, -1] > Arrays do not match! Prcoess 1, element 5: [5, -1] > Arrays do not match! Prcoess 1, element 7: [7, -1] > Arrays do not match! Prcoess 1, element 9: [9, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 2, element 1: [1, -1] > Arrays do not match! Prcoess 2, element 3: [3, -1] > Arrays do not match! Prcoess 2, element 5: [5, -1] > Arrays do not match! Prcoess 2, element 7: [7, -1] > Arrays do not match! Prcoess 2, element 9: [9, -1] > Printed 5 errors. Omitting the rest > Testing onewrite\_allread\_blocks with MPI IO PASSED > Testing onewrite\_allread\_interlaced with MPI IO PASSED > Testing allwrite\_allread\_blocks with POSIX IO PASSED > Testing onewrite\_allread\_blocks with POSIX IO PASSED > Testing onewrite\_allread\_interlaced with POSIX IO PASSED > > Testing size 16384 > Testing allwrite\_allread\_blocks with MPI IO PASSED > Testing allwrite\_allread\_interlaced with MPI IO > Arrays do not match! Prcoess 1, element 2: [0, -1] > Arrays do not match! Prcoess 1, element 0: [1, -1] > Arrays do not match! Prcoess 1, element 2: [1, -1] > Arrays do not match! Prcoess 1, element 0: [2, -1] > Arrays do not match! Prcoess 1, element 2: [2, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 2, element 2: [0, -1] > Arrays do not match! Prcoess 2, element 0: [1, -1] > Arrays do not match! Prcoess 2, element 2: [1, -1] > Arrays do not match! Prcoess 2, element 0: [2, -1] > Arrays do not match! Prcoess 2, element 2: [2, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 0, element 2: [0, -1] > Arrays do not match! Prcoess 0, element 0: [1, -1] > Arrays do not match! Prcoess 0, element 2: [1, -1] > Arrays do not match! Prcoess 0, element 0: [2, -1] > Arrays do not match! Prcoess 0, element 2: [2, -1] > Printed 5 errors. Omitting the rest > Testing allwrite\_allread\_overlap with MPI IO Arrays do not match! Prcoess 1, element 1: [1, -1] > Arrays do not match! Prcoess 1, element 3: [3, -1] > Arrays do not match! Prcoess 1, element 5: [5, -1] > Arrays do not match! Prcoess 1, element 7: [7, -1] > Arrays do not match! Prcoess 1, element 9: [9, -1] > Printed 5 errors. Omitting the rest > > Arrays do not match! Prcoess 0, element 1: [1, -1] > Arrays do not match! Prcoess 0, element 3: [3, -1] > Arrays do not match! Prcoess 0, element 5: [5, -1] > Arrays do not match! Prcoess 0, element 7: [7, -1] > Arrays do not match! Prcoess 0, element 9: [9, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 2, element 1: [1, -1] > Arrays do not match! Prcoess 2, element 3: [3, -1] > Arrays do not match! Prcoess 2, element 5: [5, -1] > Arrays do not match! Prcoess 2, element 7: [7, -1] > Arrays do not match! Prcoess 2, element 9: [9, -1] > Printed 5 errors. Omitting the rest > Testing onewrite\_allread\_blocks with MPI IO PASSED > Testing onewrite\_allread\_interlaced with MPI IO PASSED > Testing allwrite\_allread\_blocks with POSIX IO PASSED > Testing onewrite\_allread\_blocks with POSIX IO PASSED > Testing onewrite\_allread\_interlaced with POSIX IO PASSED > > Testing size 65536 > Testing allwrite\_allread\_blocks with MPI IO PASSED > Testing allwrite\_allread\_interlaced with MPI IO Arrays do not match! Prcoess 1, element 2: [0, -1] > Arrays do not match! Prcoess 1, element 0: [1, -1] > Arrays do not match! Prcoess 1, element 2: [1, -1] > Arrays do not match! Prcoess 1, element 0: [2, -1] > Arrays do not match! Prcoess 1, element 2: [2, -1] > Arrays do not match! Prcoess 2, element 2: [0, -1] > Arrays do not match! Prcoess 2, element 0: [1, -1] > Arrays do not match! Prcoess 2, element 2: [1, -1] > Arrays do not match! Prcoess 2, element 0: [2, -1] > Arrays do not match! Prcoess 2, element 2: [2, -1] > Printed 5 errors. Omitting the rest > > Arrays do not match! Prcoess 0, element 2: [0, -1] > Arrays do not match! Prcoess 0, element 0: [1, -1] > Arrays do not match! Prcoess 0, element 2: [1, -1] > Arrays do not match! Prcoess 0, element 0: [2, -1] > Arrays do not match! Prcoess 0, element 2: [2, -1] > Printed 5 errors. Omitting the rest > Printed 5 errors. Omitting the rest > Testing allwrite\_allread\_overlap with MPI IO > Arrays do not match! Prcoess 0, element 1: [1, -1] > Arrays do not match! Prcoess 0, element 3: [3, -1] > Arrays do not match! Prcoess 0, element 5: [5, -1] > Arrays do not match! Prcoess 0, element 7: [7, -1] > Arrays do not match! Prcoess 0, element 9: [9, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 1, element 1: [1, -1] > Arrays do not match! Prcoess 1, element 3: [3, -1] > Arrays do not match! Prcoess 1, element 5: [5, -1] > Arrays do not match! Prcoess 1, element 7: [7, -1] > Arrays do not match! Prcoess 1, element 9: [9, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 2, element 1: [1, -1] > Arrays do not match! Prcoess 2, element 3: [3, -1] > Arrays do not match! Prcoess 2, element 5: [5, -1] > Arrays do not match! Prcoess 2, element 7: [7, -1] > Arrays do not match! Prcoess 2, element 9: [9, -1] > Printed 5 errors. Omitting the rest > Testing onewrite\_allread\_blocks with MPI IO PASSED > Testing onewrite\_allread\_interlaced with MPI IO PASSED > Testing allwrite\_allread\_blocks with POSIX IO Arrays do not match! Prcoess 2, element 5376: [5376, 0] > Arrays do not match! Prcoess 2, element 5377: [5377, 0] > Arrays do not match! Prcoess 2, element 5378: [5378, 0] > Arrays do not match! Prcoess 2, element 5379: [5379, 0] > Arrays do not match! Prcoess 2, element 5380: [5380, 0] > Printed 5 errors. Omitting the rest > Testing onewrite\_allread\_blocks with POSIX IO PASSED > Testing onewrite\_allread\_interlaced with POSIX IO PASSED > > Testing size 262144 > Testing allwrite\_allread\_blocks with MPI IO PASSED > Testing allwrite\_allread\_interlaced with MPI IO Arrays do not match! Prcoess 2, element 1: [0, -1] > Arrays do not match! Prcoess 2, element 2: [0, -1] > Arrays do not match! Prcoess 2, element 1: [1, -1] > Arrays do not match! Prcoess 2, element 2: [1, -1] > Arrays do not match! Prcoess 2, element 1: [2, -1] > Printed 5 errors. Omitting the rest > > Arrays do not match! Prcoess 0, element 1: [0, -1] > Arrays do not match! Prcoess 0, element 2: [0, -1] > Arrays do not match! Prcoess 0, element 1: [1, -1] > Arrays do not match! Prcoess 0, element 2: [1, -1] > Arrays do not match! Prcoess 0, element 1: [2, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 1, element 1: [0, -1] > Arrays do not match! Prcoess 1, element 2: [0, -1] > Arrays do not match! Prcoess 1, element 1: [1, -1] > Arrays do not match! Prcoess 1, element 2: [1, -1] > Arrays do not match! Prcoess 1, element 1: [2, -1] > Printed 5 errors. Omitting the rest > Testing allwrite\_allread\_overlap with MPI IO > Arrays do not match! Prcoess 0, element 1: [1, -1] > Arrays do not match! Prcoess 0, element 5: [5, -1] > Arrays do not match! Prcoess 0, element 7: [7, -1] > Arrays do not match! Prcoess 0, element 11: [11, -1] > Arrays do not match! Prcoess 0, element 13: [13, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 1, element 1: [1, -1] > Arrays do not match! Prcoess 1, element 5: [5, -1] > Arrays do not match! Prcoess 1, element 7: [7, -1] > Arrays do not match! Prcoess 1, element 11: [11, -1] > Arrays do not match! Prcoess 2, element 1: [1, -1] > Arrays do not match! Prcoess 2, element 5: [5, -1] > Arrays do not match! Prcoess 2, element 7: [7, -1] > Arrays do not match! Prcoess 2, element 11: [11, -1] > Arrays do not match! Prcoess 2, element 13: [13, -1] > Printed 5 errors. Omitting the rest > Arrays do not match! Prcoess 1, element 13: [13, -1] > Printed 5 errors. Omitting the rest > Testing onewrite\_allread\_blocks with MPI IO PASSED > Testing onewrite\_allread\_interlaced with MPI IO PASSED > Testing allwrite\_allread\_blocks with POSIX IO PASSED > Testing onewrite\_allread\_blocks with POSIX IO PASSED > Testing onewrite\_allread\_interlaced with POSIX IO PASSED > > Summary: > Process 0: encountered 374218 mismatches. > Process 1: encountered 374218 mismatches. > Process 2: encountered 374546 mismatches. > 2.64user 4.76system 0:03.15elapsed 234%CPU (0avgtext+0avgdata 22616maxresident)k > 0inputs+0outputs (0major+74380minor)pagefaults 0swaps > > Finished testing t\_posix\_compliant Or phdf5 tests: > MPI-process 2. hostname=LAPTOP-KJ7BN7BP > For help use: /home/sdtran/hdf5/hdf5-1.8.4-patch1/testpar/.libs/testphdf5 -help > Linked with hdf5 version 1.8 release 4 > MPI-process 0. hostname=LAPTOP-KJ7BN7BP > > For help use: /home/sdtran/hdf5/hdf5-1.8.4-patch1/testpar/.libs/testphdf5 -help > Linked with hdf5 version 1.8 release 4 > MPI-process 1. hostname=LAPTOP-KJ7BN7BP > > For help use: /home/sdtran/hdf5/hdf5-1.8.4-patch1/testpar/.libs/testphdf5 -help > Linked with hdf5 version 1.8 release 4 > \*\*\* Hint \*\*\* > You can use environment variable HDF5\_PARAPREFIX to run parallel test files in a > different directory or to add file type prefix. E.g., > HDF5\_PARAPREFIX=pfs:/PFS/user/me > export HDF5\_PARAPREFIX > \*\*\* End of Hint \*\*\* > Test filenames are: > ParaTest.h5 > Testing – fapl\_mpio duplicate (mpiodup) > Test filenames are: > ParaTest.h5 > Testing – fapl\_mpio duplicate (mpiodup) > Test filenames are: > ParaTest.h5 > Testing – fapl\_mpio duplicate (mpiodup) > Testing – fapl\_mpiposix duplicate (posixdup) > Testing – fapl\_mpiposix duplicate (posixdup) > Testing – fapl\_mpiposix duplicate (posixdup) > Testing – dataset using split communicators (split) > Testing – dataset using split communicators (split) > Testing – dataset using split communicators (split) > Testing – dataset independent write (idsetw) > Testing – dataset independent write (idsetw) > Testing – dataset independent write (idsetw) > Testing – dataset independent read (idsetr) > Testing – dataset independent read (idsetr) > Testing – dataset independent read (idsetr) > Testing – dataset collective write (cdsetw) > Testing – dataset collective write (cdsetw) > Testing – dataset collective write (cdsetw) > Testing – dataset collective read (cdsetr) > Testing – dataset collective read (cdsetr) > Testing – dataset collective read (cdsetr) > Testing – extendible dataset independent write (eidsetw) > Testing – extendible dataset independent write (eidsetw) > Testing – extendible dataset independent write (eidsetw) > Testing – extendible dataset independent read (eidsetr) > Testing – extendible dataset independent read (eidsetr) > Testing – extendible dataset independent read (eidsetr) > Testing – extendible dataset collective write (ecdsetw) > Testing – extendible dataset collective write (ecdsetw) > Testing – extendible dataset collective write (ecdsetw) > Testing – extendible dataset collective read (ecdsetr) > Testing – extendible dataset collective read (ecdsetr) > Testing – extendible dataset collective read (ecdsetr) > Testing – extendible dataset independent write #2 (eidsetw2) > Testing – extendible dataset independent write #2 (eidsetw2) > Testing – extendible dataset independent write #2 (eidsetw2) > Testing – chunked dataset with none-selection (selnone) > Testing – chunked dataset with none-selection (selnone) > Testing – chunked dataset with none-selection (selnone) > Testing – parallel extend Chunked allocation on serial file (calloc) > Testing – parallel extend Chunked allocation on serial file (calloc) > Testing – parallel extend Chunked allocation on serial file (calloc) > Testing – parallel read of dataset written serially with filters (fltread) > Testing – parallel read of dataset written serially with filters (fltread) > Testing – parallel read of dataset written serially with filters (fltread) > Testing – compressed dataset collective read (cmpdsetr) > Testing – compressed dataset collective read (cmpdsetr) > Testing – compressed dataset collective read (cmpdsetr) > Testing – multiple datasets write (ndsetw) > Testing – multiple datasets write (ndsetw) > Testing – multiple datasets write (ndsetw) > Testing – multiple groups write (ngrpw) > Testing – multiple groups write (ngrpw) > Testing – multiple groups write (ngrpw) > Testing – multiple groups read (ngrpr) > Testing – multiple groups read (ngrpr) > Testing – multiple groups read (ngrpr) > Testing – compact dataset test (compact) > Testing – compact dataset test (compact) > Testing – compact dataset test (compact) > Testing – collective group and dataset write (cngrpw) > Testing – collective group and dataset write (cngrpw) > Testing – collective group and dataset write (cngrpw) > Testing – independent group and dataset read (ingrpr) > Testing – independent group and dataset read (ingrpr) > Testing – independent group and dataset read (ingrpr) > Testing – big dataset test (bigdset) > Testing – big dataset test (bigdset) > Testing – big dataset test (bigdset) > Proc 2: \*\*\* PHDF5 ERROR \*\*\* > Assertion (H5Fclose succeeded) failed at line 457 in t\_mdset.c > aborting MPI process > Proc 0: \*\*\* PHDF5 ERROR \*\*\* > Assertion (H5Fclose succeeded) failed at line 457 in t\_mdset.c > aborting MPI process > Proc 1: \*\*\* PHDF5 ERROR \*\*\* > Assertion (H5Fclose succeeded) failed at line 457 in t\_mdset.c > aborting MPI process > > =================================================================================== > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > = PID 19104 RUNNING AT LAPTOP-KJ7BN7BP > = EXIT CODE: 139 > = CLEANING UP REMAINING PROCESSES > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11) > This typically refers to a problem with your application. > Please see the FAQ page for debugging suggestions > Command exited with non-zero status 139