Hi,
I am fairly new to Linux and am having trouble installing hdf5. I am trying to install locally, as I don't have admin privileges on this Linux cluster. I have downloaded and unpacked the source code, and ran
./configure --enable-production --enable-shared --prefix=/home/jhtu/local --with-zlib=/home/jhtu/local --with-szlib=/home/jhtu/local
Then when I do make check, all the tests pass until
···
============================
Testing istore
istore Test Log
Test sizes: SMALL MEDIUM LARGE
Testing istore create PASSED
Testing istore extend: 10 PASSED
Testing istore extend: 10x10 PASSED
Testing istore extend: 10x10x10 PASSED
Testing istore extend: 10000 PASSED
Testing istore extend: 2500x10 PASSED
Testing istore extend: 10x400x10 PASSED
Testing istore sparse: 5 PASSED
Testing istore sparse: 3x4 PASSED
Testing istore sparse: 2x3x4 PASSED
Testing istore sparse: 30 PASSED
Testing istore sparse: 7x3 PASSED
Testing istore sparse: 4x2x3 PASSED
Testing istore sparse: 50x50x50 PASSED
*FAILED*
Command terminated by signal 11
Does anyone know what is causing this, and if it is important?
Jonathan Tu
I tried this again and got the same errors. I tried attach a copy of the screen output, but it was too large for the mailing list. Does anyone know if this is important? It seems like all the tests in this section passed before I got the *FAILED* result. But then it also hasn't done any of the tests that might come after this.
Jonathan Tu
···
On Jul 24, 2010, at 8:59 PM, Jonathan Tu wrote:
Hi,
I am fairly new to Linux and am having trouble installing hdf5. I am trying to install locally, as I don't have admin privileges on this Linux cluster. I have downloaded and unpacked the source code, and ran
./configure --enable-production --enable-shared --prefix=/home/jhtu/local --with-zlib=/home/jhtu/local --with-szlib=/home/jhtu/local
Then when I do make check, all the tests pass until
============================
Testing istore
istore Test Log
Test sizes: SMALL MEDIUM LARGE
Testing istore create PASSED
Testing istore extend: 10 PASSED
Testing istore extend: 10x10 PASSED
Testing istore extend: 10x10x10 PASSED
Testing istore extend: 10000 PASSED
Testing istore extend: 2500x10 PASSED
Testing istore extend: 10x400x10 PASSED
Testing istore sparse: 5 PASSED
Testing istore sparse: 3x4 PASSED
Testing istore sparse: 2x3x4 PASSED
Testing istore sparse: 30 PASSED
Testing istore sparse: 7x3 PASSED
Testing istore sparse: 4x2x3 PASSED
Testing istore sparse: 50x50x50 PASSED
*FAILED*
Command terminated by signal 11
Does anyone know what is causing this, and if it is important?
Jonathan Tu
Jonathan,
Please provide the version of HDF5 you are trying to build along with the versions of OS and compilers used.
Please also run make -i check to see if any other tests pass (or fail).
Thank you!
Elena
···
On Jul 25, 2010, at 11:22 AM, Jonathan Tu wrote:
On Jul 24, 2010, at 8:59 PM, Jonathan Tu wrote:
Hi,
I am fairly new to Linux and am having trouble installing hdf5. I am trying to install locally, as I don't have admin privileges on this Linux cluster. I have downloaded and unpacked the source code, and ran
./configure --enable-production --enable-shared --prefix=/home/jhtu/local --with-zlib=/home/jhtu/local --with-szlib=/home/jhtu/local
Then when I do make check, all the tests pass until
============================
Testing istore
istore Test Log
Test sizes: SMALL MEDIUM LARGE
Testing istore create PASSED
Testing istore extend: 10 PASSED
Testing istore extend: 10x10 PASSED
Testing istore extend: 10x10x10 PASSED
Testing istore extend: 10000 PASSED
Testing istore extend: 2500x10 PASSED
Testing istore extend: 10x400x10 PASSED
Testing istore sparse: 5 PASSED
Testing istore sparse: 3x4 PASSED
Testing istore sparse: 2x3x4 PASSED
Testing istore sparse: 30 PASSED
Testing istore sparse: 7x3 PASSED
Testing istore sparse: 4x2x3 PASSED
Testing istore sparse: 50x50x50 PASSED
*FAILED*
Command terminated by signal 11
Does anyone know what is causing this, and if it is important?
Jonathan Tu
I tried this again and got the same errors. I tried attach a copy of the screen output, but it was too large for the mailing list. Does anyone know if this is important? It seems like all the tests in this section passed before I got the *FAILED* result. But then it also hasn't done any of the tests that might come after this.
Jonathan Tu
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@hdfgroup.org
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
Hi,
I just ran the tests again, using make -i check. All tests passed except the istore tests, for which the screen output is shown in an email below. I checked this by grepping for "FAIL", which only appeared in the istore tests.
I am trying to build HDF51.8.5 on a RHEL4 Linux Cluster. I did not set any compiler flags, so it is probably using whatever is the default. I know that gcc and g77/gfortran are available on this cluster. There may be others, but I think those are usually chosen by default anyway by most makefiles.
Jonathan
···
On Jul 25, 2010, at 9:47 PM, Elena Pourmal wrote:
Jonathan,
Please provide the version of HDF5 you are trying to build along with the versions of OS and compilers used.
Please also run make -i check to see if any other tests pass (or fail).
Thank you!
Elena
On Jul 25, 2010, at 11:22 AM, Jonathan Tu wrote:
On Jul 24, 2010, at 8:59 PM, Jonathan Tu wrote:
Hi,
I am fairly new to Linux and am having trouble installing hdf5. I am trying to install locally, as I don't have admin privileges on this Linux cluster. I have downloaded and unpacked the source code, and ran
./configure --enable-production --enable-shared --prefix=/home/jhtu/local --with-zlib=/home/jhtu/local --with-szlib=/home/jhtu/local
Then when I do make check, all the tests pass until
============================
Testing istore
istore Test Log
Test sizes: SMALL MEDIUM LARGE
Testing istore create PASSED
Testing istore extend: 10 PASSED
Testing istore extend: 10x10 PASSED
Testing istore extend: 10x10x10 PASSED
Testing istore extend: 10000 PASSED
Testing istore extend: 2500x10 PASSED
Testing istore extend: 10x400x10 PASSED
Testing istore sparse: 5 PASSED
Testing istore sparse: 3x4 PASSED
Testing istore sparse: 2x3x4 PASSED
Testing istore sparse: 30 PASSED
Testing istore sparse: 7x3 PASSED
Testing istore sparse: 4x2x3 PASSED
Testing istore sparse: 50x50x50 PASSED
*FAILED*
Command terminated by signal 11
Does anyone know what is causing this, and if it is important?
Jonathan Tu
I tried this again and got the same errors. I tried attach a copy of the screen output, but it was too large for the mailing list. Does anyone know if this is important? It seems like all the tests in this section passed before I got the *FAILED* result. But then it also hasn't done any of the tests that might come after this.
Jonathan Tu
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@hdfgroup.org
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
_______________________________________________
Hdf-forum is for HDF software users discussion.
Hdf-forum@hdfgroup.org
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
