Dear warm staff,
Hello, I try to use HDF5 for using Seissol, which is analyzing software about earthquake disaster.
After downloading packages, I type following command
CPPFLAGS="-fPIC ${CPPFLAGS}" CC=mpicc FC=mpif90 ./configure --enable-parallel --prefix=$HOME --with-zlib --disable-shared --enable-fortran
and then, type make
make -j4
Configure process seems to be success, however, make show bad result. I add the result after typing make command. Some Japanese word are allocated. If you have some difficulties by them, I will improve.
Someone consult with make check error, but I think it is not similar with me.
I am looking forward to your reply.
Sincerely yours,
Shun
make -j4
Making all in src
make[1]: ディレクトリ /mnt/data2/tonoyama/Seissol/hdf5-1.8.21/src' に入ります make all-am make[2]: ディレクトリ/mnt/data2/tonoyama/Seissol/hdf5-1.8.21/src’ に入ります
make[2]: ディレクトリ /mnt/data2/tonoyama/Seissol/hdf5-1.8.21/src' から出ます make[1]: ディレクトリ/mnt/data2/tonoyama/Seissol/hdf5-1.8.21/src’ から出ます
Making all in test
make[1]: ディレクトリ /mnt/data2/tonoyama/Seissol/hdf5-1.8.21/test' に入ります make[1]:all’ に対して行うべき事はありません.
make[1]: ディレクトリ /mnt/data2/tonoyama/Seissol/hdf5-1.8.21/test' から出ます Making all in testpar make[1]: ディレクトリ/mnt/data2/tonoyama/Seissol/hdf5-1.8.21/testpar’ に入ります
CC t_mpi.o
CC t_cache.o
CC t_filter_read.o
CC t_pflush1.o
t_mpi.c: In function ‘test_mpio_overlap_writes’:
t_mpi.c:53: 警告: size of ‘buf’ is 4093 bytes
t_mpi.c: In function ‘test_mpio_gb_file’:
t_mpi.c:282: 警告: request for implicit conversion from ‘void *’ to ‘char *’ not permitted in C++
t_mpi.c:311: 警告: conversion to ‘char’ from ‘int’ may alter its value
t_mpi.c:353: 警告: conversion to ‘char’ from ‘int’ may alter its value
t_mpi.c: In function ‘test_mpio_1wMr’:
t_mpi.c:526: 警告: conversion to ‘unsigned char’ from ‘int’ may alter its value
t_mpi.c:598: 警告: conversion to ‘unsigned char’ from ‘int’ may alter its value
t_mpi.c: In function ‘test_mpio_derived_dtype’:
t_mpi.c:679: 警告: declaration of ‘nerrors’ shadows a global declaration
t_mpi.c:35: 警告: shadowed declaration is here
t_mpi.c:699: 警告: conversion to ‘char’ from ‘int’ may alter its value
t_mpi.c:682: 警告: unused variable ‘etypenew’
t_mpi.c:679: 警告: unused variable ‘nerrors’
t_mpi.c: In function ‘main’:
t_mpi.c:1101: 警告: フォーマットへの引数が多すぎます
t_mpi.c: In function ‘test_mpio_overlap_writes’:
t_mpi.c:86: 警告: will never be executed
t_mpi.c:100: 警告: will never be executed
t_mpi.c:131: 警告: will never be executed
t_mpi.c:140: 警告: will never be executed
t_mpi.c: In function ‘test_mpio_special_collective’:
t_mpi.c:989: 警告: will never be executed
t_mpi.c:992: 警告: will never be executed
t_mpi.c:988: 警告: will never be executed
t_mpi.c: In function ‘test_mpio_gb_file’:
t_mpi.c:227: 警告: will never be executed
t_mpi.c:235: 警告: will never be executed
t_mpi.c:236: 警告: will never be executed
t_mpi.c:251: 警告: will never be executed
t_mpi.c:257: 警告: will never be executed
t_mpi.c:279: 警告: will never be executed
t_mpi.c:341: 警告: will never be executed
t_mpi.c:383: 警告: will never be executed
t_mpi.c:387: 警告: will never be executed
t_mpi.c:230: 警告: will never be executed
t_mpi.c:256: 警告: will never be executed
t_pflush1.c:33: 警告: size of ‘the_data’ is 80000 bytes
t_pflush1.c: In function ‘create_file’:
t_pflush1.c:82: 警告: conversion to ‘double’ from ‘long long int’ may alter its value
t_filter_read.c: In function ‘filter_read_internal’:
t_filter_read.c:77: 警告: conversion to ‘hsize_t’ from ‘int’ may change the sign of the result
t_filter_read.c:80: 警告: conversion to ‘hsize_t’ from ‘int’ may change the sign of the result
t_filter_read.c: In function ‘test_filter_read’:
t_filter_read.c:234: 警告: request for implicit conversion from ‘const void *’ to ‘const char *’ not permitted in C++
t_pflush1.c: In function ‘main’:
t_pflush1.c:142: 警告: will never be executed
t_pflush1.c:142: 警告: will never be executed
t_pflush1.c:142: 警告: will never be executed
t_pflush1.c:142: 警告: will never be executed
t_pflush1.c:142: 警告: will never be executed
t_cache.c:53: 警告: size of ‘filenames’ is 8192 bytes
t_cache.c:193: 警告: size of ‘data’ is 20800000 bytes
t_cache.c:232: 警告: size of ‘data_index’ is 400000 bytes
t_filter_read.c: In function ‘filter_read_internal’:
t_filter_read.c:162: 警告: will never be executed
t_filter_read.c:162: 警告: will never be executed
t_filter_read.c:162: 警告: will never be executed
t_cache.c: In function ‘serve_read_request’:
t_cache.c:1607: 警告: conversion to ‘unsigned int’ from ‘size_t’ may alter its value
t_cache.c: In function ‘serve_write_request’:
t_cache.c:1836: 警告: conversion to ‘unsigned int’ from ‘size_t’ may alter its value
t_cache.c: In function ‘flush_datum’:
t_cache.c:2513: 警告: conversion to ‘unsigned int’ from ‘size_t’ may alter its value
t_cache.c: In function ‘load_datum’:
t_cache.c:2633: 警告: conversion to ‘unsigned int’ from ‘size_t’ may alter its value
t_cache.c: In function ‘server_smoke_check’:
t_cache.c:4995: 警告: conversion to ‘unsigned int’ from ‘size_t’ may alter its value
t_cache.c:5100: 警告: conversion to ‘unsigned int’ from ‘size_t’ may alter its value
t_cache.c: In function ‘smoke_check_3’:
t_cache.c:5714: 警告: declaration of ‘verbose’ shadows a global declaration
t_cache.c:39: 警告: shadowed declaration is here
t_pflush1.c:122: 警告: ‘file1’ may be used uninitialized in this function
t_pflush1.c:122: 警告: ‘file2’ may be used uninitialized in this function
t_cache.c: In function ‘smoke_check_5’:
t_cache.c:6399: 警告: declaration of ‘verbose’ shadows a global declaration
t_cache.c:39: 警告: shadowed declaration is here
t_cache.c: In function ‘main’:
t_cache.c:7123: 警告: フォーマットへの引数が多すぎます
t_mpi.c: In function ‘test_mpio_overlap_writes’:
t_mpi.c:96: 警告: assuming signed overflow does not occur when simplifying conditional to constant
t_cache.c: In function ‘serve_write_request’:
t_cache.c:1852: 警告: will never be executed
t_cache.c:1860: 警告: will never be executed
t_cache.c:1850: 警告: will never be executed
t_cache.c: In function ‘serve_read_request’:
t_cache.c:1627: 警告: will never be executed
t_cache.c:1635: 警告: will never be executed
t_cache.c:1625: 警告: will never be executed
t_cache.c: In function ‘serve_sync_request’:
t_cache.c:1718: 警告: will never be executed
t_cache.c:1722: 警告: will never be executed
t_cache.c:1716: 警告: will never be executed
t_cache.c: In function ‘serve_total_writes_request’:
t_cache.c:1936: 警告: will never be executed
t_cache.c:1942: 警告: will never be executed
t_cache.c:1934: 警告: will never be executed
t_cache.c: In function ‘serve_total_reads_request’:
t_cache.c:2016: 警告: will never be executed
t_cache.c:2022: 警告: will never be executed
t_cache.c:2014: 警告: will never be executed
t_cache.c: In function ‘serve_entry_writes_request’:
t_cache.c:2115: 警告: will never be executed
t_cache.c:2122: 警告: will never be executed
t_cache.c:2110: 警告: will never be executed
t_cache.c: In function ‘serve_entry_reads_request’:
t_cache.c:2213: 警告: will never be executed
t_cache.c:2220: 警告: will never be executed
t_cache.c:2208: 警告: will never be executed
t_cache.c: In function ‘serve_rw_count_reset_request’:
t_cache.c:2296: 警告: will never be executed
t_cache.c:2301: 警告: will never be executed
t_cache.c:2294: 警告: will never be executed
t_cache.c: In function ‘verify_writes’:
t_cache.c:4179: 警告: will never be executed
t_cache.c:4184: 警告: will never be executed
t_cache.c:4177: 警告: will never be executed
t_cache.c:4175: 警告: will never be executed
CC t_pflush2.o
t_cache.c: In function ‘setup_rand’:
t_cache.c:4250: 警告: will never be executed
t_cache.c:4245: 警告: will never be executed
t_cache.c: In function ‘setup_cache_for_test’:
t_cache.c:3978: 警告: will never be executed
t_cache.c: In function ‘smoke_check_3’:
t_cache.c:5749: 警告: will never be executed
t_cache.c:5758: 警告: will never be executed
t_cache.c:5765: 警告: will never be executed
t_cache.c:5771: 警告: will never be executed
t_cache.c:5776: 警告: will never be executed
t_cache.c:5785: 警告: will never be executed
t_cache.c:5791: 警告: will never be executed
t_cache.c:5808: 警告: will never be executed
t_cache.c:5850: 警告: will never be executed
t_cache.c:5859: 警告: will never be executed
t_cache.c:5865: 警告: will never be executed
t_cache.c:5902: 警告: will never be executed
t_cache.c:5921: 警告: will never be executed
t_cache.c:5941: 警告: will never be executed
t_cache.c:5955: 警告: will never be executed
t_cache.c:5980: 警告: will never be executed
t_cache.c:5991: 警告: will never be executed
t_cache.c:5998: 警告: will never be executed
t_cache.c:6030: 警告: will never be executed
t_cache.c:6037: 警告: will never be executed
t_cache.c: In function ‘smoke_check_5’:
t_cache.c:6431: 警告: will never be executed
t_cache.c:6441: 警告: will never be executed
t_cache.c:6449: 警告: will never be executed
t_cache.c:6456: 警告: will never be executed
t_cache.c:6464: 警告: will never be executed
t_cache.c:6474: 警告: will never be executed
t_cache.c:6481: 警告: will never be executed
t_cache.c:6491: 警告: will never be executed
t_cache.c:6498: 警告: will never be executed
t_cache.c:6505: 警告: will never be executed
t_cache.c:6533: 警告: will never be executed
t_cache.c:6562: 警告: will never be executed
t_cache.c:6571: 警告: will never be executed
t_cache.c:6579: 警告: will never be executed
t_cache.c:6594: 警告: will never be executed
t_cache.c:6616: 警告: will never be executed
t_cache.c:6624: 警告: will never be executed
t_mpi.c: In function ‘test_mpio_derived_dtype’:
t_mpi.c:699: 警告: will never be executed
t_mpi.c:718: error: call to ‘MPI_Type_hindexed’ declared with attribute error: MPI_Type_hindexed was removed in MPI-3.0. Use MPI_Type_create_hindexed instead.
t_mpi.c:734: error: call to ‘MPI_Type_hindexed’ declared with attribute error: MPI_Type_hindexed was removed in MPI-3.0. Use MPI_Type_create_hindexed instead.
t_mpi.c:755: error: call to ‘MPI_Type_struct’ declared with attribute error: MPI_Type_struct was removed in MPI-3.0. Use MPI_Type_create_struct instead.
t_mpi.c: In function ‘test_mpio_special_collective’:
t_mpi.c:901: error: call to ‘MPI_Type_hindexed’ declared with attribute error: MPI_Type_hindexed was removed in MPI-3.0. Use MPI_Type_create_hindexed instead.
t_mpi.c:917: error: call to ‘MPI_Type_hindexed’ declared with attribute error: MPI_Type_hindexed was removed in MPI-3.0. Use MPI_Type_create_hindexed instead.
t_mpi.c: In function ‘main’:
t_mpi.c:1140: 警告: will never be executed
make[1]: *** [t_mpi.o] エラー 1
make[1]: *** 未完了のジョブを待っています…
t_cache.c: In function ‘verify_entry_writes’:
t_cache.c:4538: 警告: ‘reported_entry_writes’ may be used uninitialized in this function
t_cache.c: In function ‘verify_entry_reads’:
t_cache.c:4430: 警告: ‘reported_entry_reads’ may be used uninitialized in this function
t_pflush2.c:33: 警告: size of ‘the_data’ is 80000 bytes
t_pflush2.c: In function ‘check_file’:
t_pflush2.c:78: 警告: conversion to ‘double’ from ‘long long int’ may alter its value
t_pflush2.c:84: 警告: conversion to ‘double’ from ‘long long int’ may alter its value
t_pflush2.c: In function ‘main’:
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c:166: 警告: will never be executed
t_pflush2.c: In function ‘check_file’:
t_pflush2.c:53: 警告: ‘space’ may be used uninitialized in this function
t_pflush2.c:53: 警告: ‘dset’ may be used uninitialized in this function
t_pflush2.c:53: 警告: ‘groups’ may be used uninitialized in this function
t_cache.c: In function ‘local_pin_and_unpin_random_entries.clone.1’:
t_cache.c:3494: 警告: will never be executed
t_cache.c: In function ‘smoke_check_4’:
t_cache.c:3374: 警告: will never be executed
t_cache.c:3364: 警告: will never be executed
t_cache.c:3365: 警告: will never be executed
t_cache.c:3363: 警告: will never be executed
t_cache.c:3369: 警告: will never be executed
t_cache.c:4900: 警告: will never be executed
t_cache.c:3362: 警告: will never be executed
t_cache.c:3367: 警告: will never be executed
t_cache.c:4895: 警告: will never be executed
t_cache.c:3354: 警告: will never be executed
t_cache.c:3349: 警告: will never be executed
t_cache.c:4930: 警告: will never be executed
t_cache.c:3500: 警告: will never be executed
t_cache.c:3426: 警告: will never be executed
t_cache.c:3433: 警告: will never be executed
t_cache.c:3424: 警告: will never be executed
t_cache.c:3431: 警告: will never be executed
t_cache.c:3412: 警告: will never be executed
t_cache.c:3407: 警告: will never be executed
t_cache.c:3189: 警告: will never be executed
t_cache.c: In function ‘smoke_check_5’:
t_cache.c:3500: 警告: will never be executed
t_cache.c:4802: 警告: will never be executed
t_cache.c: In function ‘smoke_check_1’:
t_cache.c:4802: 警告: will never be executed
t_cache.c:4802: 警告: will never be executed
t_cache.c:4802: 警告: will never be executed
t_cache.c: In function ‘smoke_check_2’:
t_cache.c:3500: 警告: will never be executed
t_cache.c:4802: 警告: will never be executed
t_cache.c:4802: 警告: will never be executed
t_cache.c:3189: 警告: will never be executed
t_cache.c: In function ‘smoke_check_3’:
t_cache.c:3500: 警告: will never be executed
t_cache.c:4802: 警告: will never be executed
t_cache.c:3189: 警告: will never be executed
t_cache.c:3189: 警告: will never be executed
t_cache.c: In function ‘main’:
t_cache.c:1190: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1191: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1192: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1193: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1194: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1195: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1196: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1197: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1198: error: call to ‘MPI_Address’ declared with attribute error: MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead.
t_cache.c:1218: error: call to ‘MPI_Type_struct’ declared with attribute error: MPI_Type_struct was removed in MPI-3.0. Use MPI_Type_create_struct instead.
t_cache.c:213:1: 警告: macro “MPE_VIRT_NUM_DATA_ENTIES” is not used
t_cache.c:48:1: 警告: macro “PARATESTFILE” is not used
make[1]: *** [t_cache.o] エラー 1
make[1]: ディレクトリ `/mnt/data2/tonoyama/Seissol/hdf5-1.8.21/testpar’ から出ます
make: *** [all-recursive] エラー 1